Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8325491.1

Orthogroup ID

OG0011243

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 956

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8325491.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 629 bp

tattgattgacttgattatttcctggtacagcaaggactcgaatcaggctcttccaaatgagaggacttttagagttccaaacactgataaagtgattgaagaaggcaaaagtacagctccaaaatttcgcaatatcactctgcacacaattggtgtcaatctgccaactgagatttacacagcaactggttggccttcagttagcggagatgctttgaagattttagctggcaagatctcttcagagtatgattttatggatcctgctcctgatatggagtctgttgatgatggagattcttgtgagacagtgagtgatgaatacttgggaaaagaagagattatctctgaaaatcttgacaggtctgactatggaacagctttgcaagcattcgagtcagaggagaaggggaaggaagcttgccaagccattgctgcattatgtcaagtttgctctattgattcgttgatatccaacttcatcctccctttgcagggcagtaatatagctggcaaaaacagacgaattcattgttcactaaatatcaacacagaaactgggcggttatctgctaggcgaccaaatttgcaggacacccttggtgcattccatcacccgtttccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006264 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009987 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032042 GO:0033258 GO:0033259 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03440 map00230 map00240 map01100 map03030 map03410 map03420 map03440

Pfam Domains

Protein Families

DNA_pol_A DNA_pol_A_exo1

Protein Analysis

208

Amino Acids

22.88

Weight (kDa)

4.73

Isoelectric Point (pI)

54.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50840 AT1G50840 AT3G20540 AT3G20540
fragaria_vesca	FvH4_3g22230
malus_domestica	MD11G1221900.v1.1
prunus_persica	Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1
pyrus_communis	pycom11g19570
rosa_chinensis	RchiOBHm_Chr5g0038301
rosa_laevigata	RLG00000033845
rosa_multiflora	Rmu_co8325491.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042720
rosa_rugosa	Rorug05G0171900
rosa_samantha	Rh5AG259200 Rh5BG263000 Rh5CG295400 Rh5DG272000
rosa_wichuraiana	Rw5G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	206, 564
AclWI	GGATC	2 cut(s)	256, 269
AcsI	RAATTY	3 cut(s)	124, 527, 585
AcuI	CTGAAG	2 cut(s)	182, 227
AfaI	GTAC	2 cut(s)	28, 114
AfiI	CCNNNNNNNGG	2 cut(s)	495, 496
AgsI	TTSAA	2 cut(s)	100, 219
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	118, 229, 382, 421, 511
AluI	AGCT	5 cut(s)	118, 229, 382, 421, 511
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	256, 269
AlwNI	CAGNNNCTG	2 cut(s)	187, 559
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	436
ApoI	RAATTY	3 cut(s)	124, 527, 585
AsuHPI	GGTGA	1 cut(s)	607
BamHI	GGATCC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	2 cut(s)	286, 620
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	575
BglII	AGATCT	1 cut(s)	236
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme1390I	CCNGG	1 cut(s)	24
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	569
BmsI	GCATC	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	569
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
BsaJI	CCNNGG	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	2 cut(s)	495, 496
Bse1I	ACTGG	2 cut(s)	192, 564
Bse3DI	GCAATG	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	1 cut(s)	482
BseLI	CCNNNNNNNGG	2 cut(s)	495, 496
BseMI	GCAATG	1 cut(s)	431
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	192, 564
BseRI	GAGGAG	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	423
BsgI	GTGCAG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	495, 496
BsmAI	GTCTC	1 cut(s)	301
BsmI	GAATGC	2 cut(s)	391, 607
BsnI	GGCC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	236, 261
BspACI	CCGC	2 cut(s)	206, 564
BspANI	GGCC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	256, 269
BspQI	GCTCTTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	431
BsrI	ACTGG	2 cut(s)	192, 564
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	2 cut(s)	236, 261
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	3 cut(s)	56, 246, 332
BstC8I	GCNNGC	4 cut(s)	231, 389, 423, 513
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	482
BstKTI	GATC	2 cut(s)	239, 264
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	236, 261
BstMWI	GCNNNNNNNGC	3 cut(s)	388, 427, 436
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	423
BstX2I	RGATCY	2 cut(s)	236, 261
BstYI	RGATCY	2 cut(s)	236, 261
BsuRI	GGCC	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	83, 317
Cac8I	GCNNGC	4 cut(s)	231, 389, 423, 513
CaiI	CAGNNNCTG	2 cut(s)	187, 559
Csp6I	GTAC	2 cut(s)	27, 113
CviAII	CATG	1 cut(s)	626
CviJI	RGCY	8 cut(s)	49, 118, 195, 229, 382, 421, 430, 511
CviKI_1	RGCY	8 cut(s)	49, 118, 195, 229, 382, 421, 430, 511
CviQI	GTAC	2 cut(s)	27, 113
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	2 cut(s)	238, 263
DpnII	GATC	2 cut(s)	236, 261
Eam1104I	CTCTTC	3 cut(s)	56, 246, 332
EarI	CTCTTC	3 cut(s)	56, 246, 332
Eco130I	CCWWGG	1 cut(s)	600
Eco32I	GATATC	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	182, 227
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	1 cut(s)	629
FaiI	YATR	7 cut(s)	251, 259, 277, 374, 444, 508, 627
FatI	CATG	1 cut(s)	625
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	1 cut(s)	469
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	1 cut(s)	575
GluI	GCNGC	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	195
Hin1II	CATG	1 cut(s)	629
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	6 cut(s)	37, 42, 280, 298, 397, 463
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	4 cut(s)	246, 351, 369, 402
Hpy188III	TCNNGA	2 cut(s)	271, 358
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	4 cut(s)	97, 206, 402, 408
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	6 cut(s)	144, 387, 439, 495, 591, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	388, 427, 436
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	629
Kzo9I	GATC	2 cut(s)	236, 261
LguI	GCTCTTC	1 cut(s)	56
LmnI	GCTCC	2 cut(s)	123, 273
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	575
MalI	GATC	2 cut(s)	238, 263
MboI	GATC	2 cut(s)	236, 261
MboII	GAAGA	5 cut(s)	43, 112, 231, 233, 349
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	2 cut(s)	236, 261
MluCI	AATT	4 cut(s)	124, 149, 527, 585
MlyI	GAGTC	3 cut(s)	31, 289, 406
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	3 cut(s)	56, 396, 496
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	2 cut(s)	391, 607
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	388, 427, 436
NdeII	GATC	2 cut(s)	236, 261
NlaIII	CATG	1 cut(s)	629
NlaIV	GGNNCC	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	56
PctI	GAATGC	2 cut(s)	391, 607
PfeI	GAWTC	3 cut(s)	42, 298, 463
PkrI	GCNGC	1 cut(s)	438
PleI	GAGTC	3 cut(s)	31, 288, 405
PpsI	GAGTC	3 cut(s)	31, 288, 405
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	263
PstNI	CAGNNNCTG	2 cut(s)	187, 559
PsuI	RGATCY	2 cut(s)	236, 261
RsaI	GTAC	2 cut(s)	28, 114
RsaNI	GTAC	2 cut(s)	27, 113
SapI	GCTCTTC	1 cut(s)	56
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	2 cut(s)	236, 261
SchI	GAGTC	3 cut(s)	31, 289, 406
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	6 cut(s)	120, 231, 367, 384, 423, 513
SfaNI	GCATC	1 cut(s)	201
Sse9I	AATT	4 cut(s)	124, 149, 527, 585
SsiI	CCGC	2 cut(s)	206, 564
SspMI	CTAG	1 cut(s)	575
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	40, 395
TasI	AATT	4 cut(s)	124, 149, 527, 585
TatI	WGTACW	1 cut(s)	112
TfiI	GAWTC	3 cut(s)	42, 298, 463
TscAI	CASTG	2 cut(s)	90, 317
TseI	GCWGC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	335, 471, 520
TspRI	CASTG	2 cut(s)	90, 317
XapI	RAATTY	3 cut(s)	124, 527, 585
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.