Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011243

Physical Location & Seq

Genomic Coordinates Reverse (-)

16033032 .. 16034659

Gene Structure 1628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0171900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAAACAAGCAGAGAGTGCATGAGAATTTGCATTCTTCTTCTCTATTTGACTGCAGCAACTATTTCCTTCACTCAATGTGATGCAAGAAAATCACATAGATTACTAAAGGGTCTTACAAAACCCCCTCCAACCCATCACAGAAGTCTGTTTCTCAGAACTGCAAAGAAGTTGAATTTAGTAAAGCGCATTGAGTATAACCCATTTGGTTCATCAAAGCAACAAAACCAAGAACCCTATGGTTTGAATTCACCACTTTCATTGCCACCTTATGATTCACTAGCTCCACTTTCCTTGCCTGATCCAAATGCTCCTCCATTTTGTACTTACCCACCCAACACTCCACAAACCCCCTCTACAACTACTCCAACCACATCATCACCCCCAAGCCCACAATCACCTTATCTTTACGTTCCACCAATTCTTCCCATGCAAAGCCCACCACCAGTCCCAATAGGCACTATCCCAGGCCCACCACAATCTATCTCCGCCCCTATTCCCCCAGCATCCGGAACCGTGCCTGGGCCGCCGGAGTCTATACCGAGTCCGACCATCTACTTCCCAGGCCCACCGCAATCTATCCCGACCCCTAATCCACCCGAAACCGTCCCAAGCCCACCTGATTACGAGCCCAGCCCGCCAGATTTTTCTATTCCAAGCCCACCTTCTTTCGTCCCATCTCCTCCCTATGGGTTCCAACCAAGCCCACCAGTGTTCGAACCCCCTGTTGTGTTCCCTCCACCAACCACTCCGCCGAGTCCAAAGAAAGGCCCGACAACGGCCCTGTGGTGCGTGGCCAAGCCGTCGGTGCCCGACCCAATCATCCAAGAAGCCATGAACTACGCGTGCGGGTCCGGAGCAAATTGTGATGCCATTCTGCCCAATGGGTCATGCTTTGAGCCCAACACATTGTTTGCCCATGCTTCGTTTGCCTTCAATAGTTACTGGCAAAGGACCAGGGTTGCTGGTGGCACCTGTTCGTTTGGAGGAACAGCCATACTAGTCACAGCTGATCCAAGTTATGATGGGTGCCGGTTTGACTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006264 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009987 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032042 GO:0033258 GO:0033259 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03440 map00230 map00240 map01100 map03030 map03410 map03420 map03440

Pfam Domains

Protein Families

DNA_pol_A DNA_pol_A_exo1

Protein Analysis

349

Amino Acids

37.39

Weight (kDa)

6.87

Isoelectric Point (pI)

80.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	262 - 332	3.1e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50840 AT1G50840 AT3G20540 AT3G20540
fragaria_vesca	FvH4_3g22230
malus_domestica	MD11G1221900.v1.1
prunus_persica	Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1
pyrus_communis	pycom11g19570
rosa_chinensis	RchiOBHm_Chr5g0038301
rosa_laevigata	RLG00000033845
rosa_multiflora	Rmu_co8325491.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042720
rosa_rugosa	Rorug05G0171900
rosa_samantha	Rh5AG259200 Rh5BG263000 Rh5CG295400 Rh5DG272000
rosa_wichuraiana	Rw5G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	808, 971, 1029
AccII	CGCG	1 cut(s)	845
AccIII	TCCGGA	2 cut(s)	509, 854
AciI	CCGC	6 cut(s)	489, 527, 572, 638, 752, 849
AclWI	GGATC	2 cut(s)	296, 1007
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	3 cut(s)	27, 175, 247
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	5 cut(s)	509, 522, 689, 767, 778
AflIII	ACRYGT	1 cut(s)	843
AgsI	TTSAA	3 cut(s)	175, 247, 937
AhlI	ACTAGT	1 cut(s)	1000
AjnI	CCWGG	4 cut(s)	466, 520, 562, 956
AjuI	GAANNNNNNNTTGG	2 cut(s)	649, 681
AluBI	AGCT	2 cut(s)	284, 1010
AluI	AGCT	2 cut(s)	284, 1010
AlwI	GGATC	2 cut(s)	296, 1007
Aor13HI	TCCGGA	2 cut(s)	509, 854
AoxI	GGCC	6 cut(s)	469, 524, 565, 769, 780, 795
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	3 cut(s)	27, 175, 247
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	7 cut(s)	470, 524, 566, 770, 781, 852, 954
AsuHPI	GGTGA	3 cut(s)	243, 372, 390
AsuII	TTCGAA	1 cut(s)	717
AvaII	GGWCC	2 cut(s)	852, 954
BaeGI	GKGCMC	1 cut(s)	813
BalI	TGGCCA	1 cut(s)	797
BanI	GGYRCC	3 cut(s)	808, 971, 1029
BanII	GRGCYC	2 cut(s)	633, 903
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	4 cut(s)	144, 560, 685, 1019
BceAI	ACGGC	2 cut(s)	787, 795
BciT130I	CCWGG	4 cut(s)	468, 522, 564, 958
BcuI	ACTAGT	1 cut(s)	1000
BfaI	CTAG	2 cut(s)	281, 1001
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	57, 527
BlsI	GCNGC	2 cut(s)	58, 528
Bme1390I	CCNGG	4 cut(s)	468, 522, 564, 958
Bme18I	GGWCC	2 cut(s)	852, 954
BmgT120I	GGNCC	7 cut(s)	470, 524, 566, 770, 781, 852, 954
BmiI	GGNNCC	6 cut(s)	514, 695, 810, 853, 973, 1031
BmrFI	CCNGG	4 cut(s)	468, 522, 564, 958
BmsI	GCATC	3 cut(s)	73, 515, 859
Bpu14I	TTCGAA	1 cut(s)	717
BsaJI	CCNNGG	4 cut(s)	466, 521, 562, 957
BsaWI	WCCGGW	2 cut(s)	509, 854
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	5 cut(s)	509, 522, 689, 767, 778
Bse118I	RCCGGY	1 cut(s)	1032
Bse1I	ACTGG	3 cut(s)	446, 710, 950
Bse3DI	GCAATG	1 cut(s)	260
BseAI	TCCGGA	2 cut(s)	509, 854
BseBI	CCWGG	4 cut(s)	468, 522, 564, 958
BseDI	CCNNGG	4 cut(s)	466, 521, 562, 957
BseGI	GGATG	2 cut(s)	506, 822
BseLI	CCNNNNNNNGG	5 cut(s)	509, 522, 689, 767, 778
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	169
BseNI	ACTGG	3 cut(s)	446, 710, 950
BseRI	GAGGAG	2 cut(s)	303, 672
BseSI	GKGCMC	1 cut(s)	813
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	2 cut(s)	502, 632
Bsh1236I	CGCG	1 cut(s)	845
BshFI	GGCC	6 cut(s)	471, 526, 567, 771, 782, 797
BshNI	GGYRCC	3 cut(s)	808, 971, 1029
BsiSI	CCGG	4 cut(s)	510, 530, 855, 1033
BslFI	GGGAC	3 cut(s)	434, 593, 659
BslI	CCNNNNNNNGG	5 cut(s)	509, 522, 689, 767, 778
BsmFI	GGGAC	3 cut(s)	434, 593, 659
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	6 cut(s)	471, 526, 567, 771, 782, 797
Bsp119I	TTCGAA	1 cut(s)	717
Bsp1286I	GDGCHC	3 cut(s)	633, 813, 903
Bsp13I	TCCGGA	2 cut(s)	509, 854
Bsp143I	GATC	2 cut(s)	301, 1012
BspACI	CCGC	6 cut(s)	489, 527, 572, 638, 752, 849
BspANI	GGCC	6 cut(s)	471, 526, 567, 771, 782, 797
BspCNI	CTCAG	1 cut(s)	168
BspEI	TCCGGA	2 cut(s)	509, 854
BspFNI	CGCG	1 cut(s)	845
BspLI	GGNNCC	6 cut(s)	514, 695, 810, 853, 973, 1031
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	2 cut(s)	296, 1007
BspT104I	TTCGAA	1 cut(s)	717
BspT107I	GGYRCC	3 cut(s)	808, 971, 1029
BsrDI	GCAATG	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	1032
BsrI	ACTGG	3 cut(s)	446, 710, 950
BssAI	RCCGGY	1 cut(s)	1032
BssECI	CCNNGG	4 cut(s)	466, 521, 562, 957
BssMI	GATC	2 cut(s)	301, 1012
Bst2UI	CCWGG	4 cut(s)	468, 522, 564, 958
Bst4CI	ACNGT	2 cut(s)	517, 607
BstAPI	GCANNNNNTGC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	717
BstC8I	GCNNGC	2 cut(s)	638, 847
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	506, 822
BstFNI	CGCG	1 cut(s)	845
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	2 cut(s)	304, 1015
BstMBI	GATC	2 cut(s)	301, 1012
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 526, 637, 808, 929
BstNI	CCWGG	4 cut(s)	468, 522, 564, 958
BstSCI	CCNGG	4 cut(s)	466, 520, 562, 956
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	813
BstUI	CGCG	1 cut(s)	845
BstV1I	GCAGC	1 cut(s)	68
BsuRI	GGCC	6 cut(s)	471, 526, 567, 771, 782, 797
BtsCI	GGATG	2 cut(s)	506, 822
BtsIMutI	CAGTG	1 cut(s)	717
Cac8I	GCNNGC	2 cut(s)	638, 847
CfoI	GCGC	1 cut(s)	189
Cfr10I	RCCGGY	1 cut(s)	1032
Cfr13I	GGNCC	7 cut(s)	470, 524, 566, 770, 781, 852, 954
Csp6I	GTAC	1 cut(s)	324
CspCI	CAANNNNNGTGG	4 cut(s)	243, 276, 278, 311
CviAII	CATG	5 cut(s)	22, 430, 835, 891, 920
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	303, 1014
DpnII	GATC	2 cut(s)	301, 1012
EaeI	YGGCCR	1 cut(s)	795
EciI	GGCGGA	2 cut(s)	478, 741
Eco24I	GRGCYC	2 cut(s)	633, 903
Eco47I	GGWCC	2 cut(s)	852, 954
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	4 cut(s)	466, 520, 562, 956
EcoT38I	GRGCYC	2 cut(s)	633, 903
FaeI	CATG	5 cut(s)	25, 433, 838, 894, 923
FalI	AAGNNNNNCTT	2 cut(s)	649, 681
FaqI	GGGAC	3 cut(s)	434, 593, 659
FatI	CATG	5 cut(s)	21, 429, 834, 890, 919
FauI	CCCGC	2 cut(s)	645, 842
Fnu4HI	GCNGC	2 cut(s)	57, 527
FokI	GGATG	2 cut(s)	493, 809
FriOI	GRGCYC	2 cut(s)	633, 903
Fsp4HI	GCNGC	2 cut(s)	57, 527
FspBI	CTAG	2 cut(s)	281, 1001
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	2 cut(s)	57, 527
GsaI	CCCAGC	2 cut(s)	506, 636
HaeIII	GGCC	6 cut(s)	471, 526, 567, 771, 782, 797
HapII	CCGG	4 cut(s)	510, 530, 855, 1033
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	5 cut(s)	25, 433, 838, 894, 923
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HinfI	GANTC	4 cut(s)	275, 533, 544, 757
HpaII	CCGG	4 cut(s)	510, 530, 855, 1033
HphI	GGTGA	3 cut(s)	243, 372, 390
Hpy188I	TCNGA	2 cut(s)	158, 549
Hpy188III	TCNNGA	3 cut(s)	510, 583, 855
Hpy99I	CGWCG	1 cut(s)	808
HpyAV	CCTTC	3 cut(s)	79, 675, 943
HpyCH4III	ACNGT	2 cut(s)	517, 607
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	6 cut(s)	21, 33, 56, 86, 164, 433
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 526, 637, 808, 929
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	5 cut(s)	25, 433, 838, 894, 923
HspAI	GCGC	1 cut(s)	187
Kpn2I	TCCGGA	2 cut(s)	509, 854
Kzo9I	GATC	2 cut(s)	301, 1012
LmnI	GCTCC	3 cut(s)	289, 316, 857
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	3 cut(s)	73, 515, 859
MaeI	CTAG	2 cut(s)	281, 1001
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	941, 1003
MalI	GATC	2 cut(s)	303, 1014
MboI	GATC	2 cut(s)	301, 1012
MboII	GAAGA	3 cut(s)	29, 32, 416
MhlI	GDGCHC	3 cut(s)	633, 813, 903
MlsI	TGGCCA	1 cut(s)	797
MluCI	AATT	5 cut(s)	27, 175, 247, 420, 862
MluI	ACGCGT	1 cut(s)	843
MluNI	TGGCCA	1 cut(s)	797
MlyI	GAGTC	3 cut(s)	542, 553, 766
MmeI	TCCRAC	4 cut(s)	155, 392, 572, 721
MnlI	CCTC	6 cut(s)	138, 324, 364, 693, 747, 980
Mox20I	TGGCCA	1 cut(s)	797
MroI	TCCGGA	2 cut(s)	509, 854
MscI	TGGCCA	1 cut(s)	797
Msp20I	TGGCCA	1 cut(s)	797
MspA1I	CMGCKG	1 cut(s)	1010
MspI	CCGG	4 cut(s)	510, 530, 855, 1033
MspR9I	CCNGG	4 cut(s)	468, 522, 564, 958
Mva1269I	GAATGC	1 cut(s)	33
MvaI	CCWGG	4 cut(s)	468, 522, 564, 958
MvnI	CGCG	1 cut(s)	845
MwoI	GCNNNNNNNGC	5 cut(s)	18, 526, 637, 808, 929
NdeII	GATC	2 cut(s)	301, 1012
NlaIII	CATG	5 cut(s)	25, 433, 838, 894, 923
NlaIV	GGNNCC	6 cut(s)	514, 695, 810, 853, 973, 1031
NmeAIII	GCCGAG	1 cut(s)	780
NmuCI	GTSAC	1 cut(s)	1003
NspV	TTCGAA	1 cut(s)	717
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	58, 528
PleI	GAGTC	3 cut(s)	541, 552, 765
PpsI	GAGTC	3 cut(s)	541, 552, 765
Psp6I	CCWGG	4 cut(s)	466, 520, 562, 956
PspFI	CCCAGC	2 cut(s)	502, 632
PspGI	CCWGG	4 cut(s)	466, 520, 562, 956
PspN4I	GGNNCC	6 cut(s)	514, 695, 810, 853, 973, 1031
PspPI	GGNCC	7 cut(s)	470, 524, 566, 770, 781, 852, 954
PstI	CTGCAG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	1010
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SatI	GCNGC	2 cut(s)	57, 527
Sau3AI	GATC	2 cut(s)	301, 1012
Sau96I	GGNCC	7 cut(s)	470, 524, 566, 770, 781, 852, 954
SchI	GAGTC	3 cut(s)	542, 553, 766
ScrFI	CCNGG	4 cut(s)	468, 522, 564, 958
SduI	GDGCHC	3 cut(s)	633, 813, 903
SetI	ASST	8 cut(s)	271, 286, 403, 414, 622, 667, 977, 1012
SfaNI	GCATC	3 cut(s)	73, 515, 859
SfcI	CTRYAG	1 cut(s)	54
SfuI	TTCGAA	1 cut(s)	717
SinI	GGWCC	2 cut(s)	852, 954
SpeI	ACTAGT	1 cut(s)	1000
Sse9I	AATT	5 cut(s)	27, 175, 247, 420, 862
SsiI	CCGC	6 cut(s)	489, 527, 572, 638, 752, 849
SspMI	CTAG	2 cut(s)	281, 1001
StyD4I	CCNGG	4 cut(s)	466, 520, 562, 956
TaaI	ACNGT	2 cut(s)	517, 607
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	717
TasI	AATT	5 cut(s)	27, 175, 247, 420, 862
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	1 cut(s)	529
TfiI	GAWTC	1 cut(s)	275
TscAI	CASTG	1 cut(s)	717
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	3 cut(s)	201, 249, 851
TspRI	CASTG	1 cut(s)	717
VpaK11BI	GGWCC	2 cut(s)	852, 954
XapI	RAATTY	3 cut(s)	27, 175, 247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XspI	CTAG	2 cut(s)	281, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.