DNA polymerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G50840 AT1G50840 AT3G20540 AT3G20540 |
| fragaria_vesca | FvH4_3g22230 |
| malus_domestica | MD11G1221900.v1.1 |
| prunus_persica | Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1 |
| pyrus_communis | pycom11g19570 |
| rosa_chinensis | RchiOBHm_Chr5g0038301 |
| rosa_laevigata | RLG00000033845 |
| rosa_multiflora | Rmu_co8325491.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00042720 |
| rosa_rugosa | Rorug05G0171900 |
| rosa_samantha | Rh5AG259200 Rh5BG263000 Rh5CG295400 Rh5DG272000 |
| rosa_wichuraiana | Rw5G024260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1196 |
| Acc65I | GGTACC | 1 cut(s) | 1292 |
| AccB1I | GGYRCC | 3 cut(s) | 159, 1210, 1292 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1463 |
| AccBSI | CCGCTC | 1 cut(s) | 1952 |
| AciI | CCGC | 9 cut(s) | 248, 981, 1129, 1150, 1890, 1950, 2248, 2314, 3080 |
| AclWI | GGATC | 8 cut(s) | 1016, 1367, 1940, 1953, 2305, 2516, 2529, 2584 |
| AcoI | YGGCCR | 1 cut(s) | 1581 |
| AcsI | RAATTY | 6 cut(s) | 1001, 1808, 2211, 2269, 2341, 2756 |
| AcuI | CTGAAG | 6 cut(s) | 96, 228, 333, 889, 1866, 1911 |
| AcyI | GRCGYC | 1 cut(s) | 160 |
| AdeI | CACNNNGTG | 1 cut(s) | 398 |
| AfaI | GTAC | 6 cut(s) | 705, 1294, 1655, 1798, 2471, 2699 |
| AflIII | ACRYGT | 1 cut(s) | 2466 |
| AgeI | ACCGGT | 1 cut(s) | 2301 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3034 |
| AjnI | CCWGG | 5 cut(s) | 236, 2316, 2335, 2530, 2667 |
| AleI | CACNNNNGTG | 1 cut(s) | 845 |
| Alw21I | GWGCWC | 2 cut(s) | 2827, 3100 |
| Alw26I | GTCTC | 2 cut(s) | 383, 778 |
| Alw44I | GTGCAC | 1 cut(s) | 3096 |
| AlwI | GGATC | 8 cut(s) | 1016, 1367, 1940, 1953, 2305, 2516, 2529, 2584 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1463, 1871, 2243 |
| Ama87I | CYCGRG | 1 cut(s) | 2646 |
| AoxI | GGCC | 7 cut(s) | 35, 572, 1125, 1581, 1877, 2987, 3015 |
| ApaLI | GTGCAC | 1 cut(s) | 3096 |
| ApeKI | GCWGC | 9 cut(s) | 179, 245, 692, 2120, 2330, 2849, 2879, 2950, 3113 |
| ApoI | RAATTY | 6 cut(s) | 1001, 1808, 2211, 2269, 2341, 2756 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 13, 45, 215, 247 |
| AsiGI | ACCGGT | 1 cut(s) | 2301 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 720 |
| Asp718I | GGTACC | 1 cut(s) | 1292 |
| AspLEI | GCGC | 1 cut(s) | 162 |
| AspS9I | GGNCC | 9 cut(s) | 96, 515, 572, 620, 920, 1126, 2299, 2962, 2987 |
| AsuC2I | CCSGG | 2 cut(s) | 2647, 2648 |
| AsuHPI | GGTGA | 3 cut(s) | 410, 505, 821 |
| AsuII | TTCGAA | 2 cut(s) | 1724, 2770 |
| AsuNHI | GCTAGC | 1 cut(s) | 2816 |
| AvaI | CYCGRG | 1 cut(s) | 2646 |
| AvaII | GGWCC | 6 cut(s) | 96, 515, 620, 920, 2299, 2962 |
| AxyI | CCTNAGG | 2 cut(s) | 164, 260 |
| BaeGI | GKGCMC | 3 cut(s) | 1213, 2791, 3100 |
| BalI | TGGCCA | 1 cut(s) | 1583 |
| BamHI | GGATCC | 2 cut(s) | 1945, 2521 |
| BanI | GGYRCC | 3 cut(s) | 159, 1210, 1292 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2555, 2587 |
| BauI | CACGAG | 1 cut(s) | 2811 |
| BbsI | GAAGAC | 3 cut(s) | 72, 593, 1262 |
| Bbv12I | GWGCWC | 2 cut(s) | 2827, 3100 |
| BbvI | GCAGC | 9 cut(s) | 166, 232, 679, 2107, 2317, 2836, 2866, 2937, 3100 |
| BceAI | ACGGC | 1 cut(s) | 2805 |
| BciT130I | CCWGG | 5 cut(s) | 238, 2318, 2337, 2532, 2669 |
| BciVI | GTATCC | 1 cut(s) | 2560 |
| BcnI | CCSGG | 2 cut(s) | 2647, 2648 |
| BcoDI | GTCTC | 2 cut(s) | 383, 778 |
| BfaI | CTAG | 8 cut(s) | 93, 228, 480, 624, 1562, 2259, 2780, 2817 |
| BfmI | CTRYAG | 2 cut(s) | 462, 879 |
| BfoI | RGCGCY | 1 cut(s) | 163 |
| BfuI | GTATCC | 1 cut(s) | 2560 |
| BglII | AGATCT | 3 cut(s) | 718, 1920, 2935 |
| Bme1390I | CCNGG | 7 cut(s) | 238, 2318, 2337, 2532, 2647, 2648, 2669 |
| Bme18I | GGWCC | 6 cut(s) | 96, 515, 620, 920, 2299, 2962 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3034 |
| BmeT110I | CYCGRG | 1 cut(s) | 2646 |
| BmgT120I | GGNCC | 9 cut(s) | 96, 515, 572, 620, 920, 1126, 2299, 2962, 2987 |
| BmiI | GGNNCC | 7 cut(s) | 161, 573, 1212, 1294, 1468, 1947, 2523 |
| BmrFI | CCNGG | 7 cut(s) | 238, 2318, 2337, 2532, 2647, 2648, 2669 |
| BmrI | ACTGGG | 4 cut(s) | 533, 1316, 2253, 2543 |
| BmtI | GCTAGC | 1 cut(s) | 2820 |
| BmuI | ACTGGG | 4 cut(s) | 533, 1316, 2253, 2543 |
| BpiI | GAAGAC | 3 cut(s) | 72, 593, 1262 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2015, 2047 |
| BpmI | CTGGAG | 3 cut(s) | 259, 2616, 2847 |
| Bpu14I | TTCGAA | 2 cut(s) | 1724, 2770 |
| BpuEI | CTTGAG | 1 cut(s) | 2534 |
| BpuMI | CCSGG | 2 cut(s) | 2647, 2648 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1452, 1725 |
| BsaHI | GRCGYC | 1 cut(s) | 160 |
| BsaJI | CCNNGG | 5 cut(s) | 567, 1194, 1355, 1533, 2646 |
| BsaWI | WCCGGW | 1 cut(s) | 2301 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1409, 1439 |
| Bse118I | RCCGGY | 2 cut(s) | 638, 2301 |
| Bse21I | CCTNAGG | 2 cut(s) | 164, 260 |
| Bse3DI | GCAATG | 4 cut(s) | 2115, 2466, 2613, 2774 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1452, 1725 |
| BseBI | CCWGG | 5 cut(s) | 238, 2318, 2337, 2532, 2669 |
| BseDI | CCNNGG | 5 cut(s) | 567, 1194, 1355, 1533, 2646 |
| BseGI | GGATG | 6 cut(s) | 804, 970, 2166, 2425, 2677, 3060 |
| BseJI | GATNNNNATC | 2 cut(s) | 1452, 1725 |
| BseMI | GCAATG | 4 cut(s) | 2115, 2466, 2613, 2774 |
| BseMII | CTCAG | 4 cut(s) | 251, 843, 1845, 2571 |
| BseRI | GAGGAG | 4 cut(s) | 1238, 1358, 2102, 3017 |
| BseSI | GKGCMC | 3 cut(s) | 1213, 2791, 3100 |
| BseXI | GCAGC | 9 cut(s) | 166, 232, 679, 2107, 2317, 2836, 2866, 2937, 3100 |
| BsgI | GTGCAG | 3 cut(s) | 1811, 2316, 2888 |
| BshFI | GGCC | 7 cut(s) | 37, 574, 1127, 1583, 1879, 2989, 3017 |
| BshNI | GGYRCC | 3 cut(s) | 159, 1210, 1292 |
| BshTI | ACCGGT | 1 cut(s) | 2301 |
| BsiHKAI | GWGCWC | 2 cut(s) | 2827, 3100 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2646 |
| BsiSI | CCGG | 3 cut(s) | 639, 2302, 2647 |
| BslFI | GGGAC | 2 cut(s) | 671, 1717 |
| BsmAI | GTCTC | 2 cut(s) | 383, 778 |
| BsmFI | GGGAC | 2 cut(s) | 671, 1717 |
| BsmI | GAATGC | 2 cut(s) | 1545, 2075 |
| BsnI | GGCC | 7 cut(s) | 37, 574, 1127, 1583, 1879, 2989, 3017 |
| BsoBI | CYCGRG | 1 cut(s) | 2646 |
| Bsp119I | TTCGAA | 2 cut(s) | 1724, 2770 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1213, 2791, 2827, 3100 |
| Bsp19I | CCATGG | 1 cut(s) | 1355 |
| BspACI | CCGC | 9 cut(s) | 248, 981, 1129, 1150, 1890, 1950, 2248, 2314, 3080 |
| BspANI | GGCC | 7 cut(s) | 37, 574, 1127, 1583, 1879, 2989, 3017 |
| BspCNI | CTCAG | 4 cut(s) | 252, 844, 1846, 2572 |
| BspLI | GGNNCC | 7 cut(s) | 161, 573, 1212, 1294, 1468, 1947, 2523 |
| BspOI | GCTAGC | 1 cut(s) | 2820 |
| BspPI | GGATC | 8 cut(s) | 1016, 1367, 1940, 1953, 2305, 2516, 2529, 2584 |
| BspQI | GCTCTTC | 1 cut(s) | 1740 |
| BspT104I | TTCGAA | 2 cut(s) | 1724, 2770 |
| BspT107I | GGYRCC | 3 cut(s) | 159, 1210, 1292 |
| BsrBI | CCGCTC | 1 cut(s) | 1952 |
| BsrDI | GCAATG | 4 cut(s) | 2115, 2466, 2613, 2774 |
| BsrFI | RCCGGY | 2 cut(s) | 638, 2301 |
| BssAI | RCCGGY | 2 cut(s) | 638, 2301 |
| BssECI | CCNNGG | 5 cut(s) | 567, 1194, 1355, 1533, 2646 |
| BssNI | GRCGYC | 1 cut(s) | 160 |
| BssSI | CACGAG | 1 cut(s) | 2811 |
| BssT1I | CCWWGG | 3 cut(s) | 567, 1194, 1355 |
| Bst2BI | CACGAG | 1 cut(s) | 2811 |
| Bst2UI | CCWGG | 5 cut(s) | 238, 2318, 2337, 2532, 2669 |
| Bst4CI | ACNGT | 5 cut(s) | 356, 428, 1708, 2405, 2686 |
| Bst6I | CTCTTC | 3 cut(s) | 1740, 1930, 2016 |
| BstACI | GRCGYC | 1 cut(s) | 160 |
| BstBI | TTCGAA | 2 cut(s) | 1724, 2770 |
| BstDEI | CTNAG | 9 cut(s) | 164, 260, 803, 852, 1516, 1650, 1854, 2378, 2580 |
| BstDSI | CCRYGG | 1 cut(s) | 1355 |
| BstF5I | GGATG | 6 cut(s) | 804, 970, 2166, 2425, 2677, 3060 |
| BstH2I | RGCGCY | 1 cut(s) | 163 |
| BstHHI | GCGC | 1 cut(s) | 162 |
| BstMAI | GTCTC | 2 cut(s) | 383, 778 |
| BstNI | CCWGG | 5 cut(s) | 238, 2318, 2337, 2532, 2669 |
| BstNSI | RCATGY | 3 cut(s) | 2416, 2470, 3037 |
| BstSCI | CCNGG | 7 cut(s) | 236, 2316, 2335, 2530, 2645, 2646, 2667 |
| BstSFI | CTRYAG | 2 cut(s) | 462, 879 |
| BstSLI | GKGCMC | 3 cut(s) | 1213, 2791, 3100 |
| BstV1I | GCAGC | 9 cut(s) | 166, 232, 679, 2107, 2317, 2836, 2866, 2937, 3100 |
| BstV2I | GAAGAC | 3 cut(s) | 72, 593, 1262 |
| BstX2I | RGATCY | 9 cut(s) | 718, 1021, 1359, 1920, 1945, 2310, 2521, 2576, 2935 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1123 |
| BstYI | RGATCY | 9 cut(s) | 718, 1021, 1359, 1920, 1945, 2310, 2521, 2576, 2935 |
| Bsu36I | CCTNAGG | 2 cut(s) | 164, 260 |
| BsuI | GTATCC | 1 cut(s) | 2560 |
| BsuRI | GGCC | 7 cut(s) | 37, 574, 1127, 1583, 1879, 2989, 3017 |
| BtgI | CCRYGG | 1 cut(s) | 1355 |
| BtsCI | GGATG | 6 cut(s) | 804, 970, 2166, 2425, 2677, 3060 |
| BtsI | GCAGTG | 1 cut(s) | 1442 |
| BtsIMutI | CAGTG | 4 cut(s) | 1442, 1767, 2001, 2871 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1463, 1871, 2243 |
| CfoI | GCGC | 1 cut(s) | 162 |
| Cfr10I | RCCGGY | 2 cut(s) | 638, 2301 |
| Cfr13I | GGNCC | 9 cut(s) | 96, 515, 572, 620, 920, 1126, 2299, 2962, 2987 |
| Cfr9I | CCCGGG | 1 cut(s) | 2646 |
| CsiI | ACCWGGT | 1 cut(s) | 2530 |
| Csp6I | GTAC | 6 cut(s) | 704, 1293, 1654, 1797, 2470, 2698 |
| CspAI | ACCGGT | 1 cut(s) | 2301 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2416, 2451 |
| CviQI | GTAC | 6 cut(s) | 704, 1293, 1654, 1797, 2470, 2698 |
| DdeI | CTNAG | 9 cut(s) | 164, 260, 803, 852, 1516, 1650, 1854, 2378, 2580 |
| DinI | GGCGCC | 1 cut(s) | 161 |
| DraIII | CACNNNGTG | 1 cut(s) | 398 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1196 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3034 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1196 |
| EaeI | YGGCCR | 1 cut(s) | 1581 |
| Eam1104I | CTCTTC | 3 cut(s) | 1740, 1930, 2016 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3034 |
| EarI | CTCTTC | 3 cut(s) | 1740, 1930, 2016 |
| EciI | GGCGGA | 1 cut(s) | 2303 |
| Eco130I | CCWWGG | 3 cut(s) | 567, 1194, 1355 |
| Eco147I | AGGCCT | 1 cut(s) | 37 |
| Eco32I | GATATC | 4 cut(s) | 1248, 1559, 2157, 2913 |
| Eco47I | GGWCC | 6 cut(s) | 96, 515, 620, 920, 2299, 2962 |
| Eco57I | CTGAAG | 6 cut(s) | 96, 228, 333, 889, 1866, 1911 |
| Eco81I | CCTNAGG | 2 cut(s) | 164, 260 |
| Eco88I | CYCGRG | 1 cut(s) | 2646 |
| EcoO109I | RGGNCCY | 1 cut(s) | 96 |
| EcoRI | GAATTC | 1 cut(s) | 2211 |
| EcoRII | CCWGG | 5 cut(s) | 236, 2316, 2335, 2530, 2667 |
| EcoRV | GATATC | 4 cut(s) | 1248, 1559, 2157, 2913 |
| EcoT14I | CCWWGG | 3 cut(s) | 567, 1194, 1355 |
| EgeI | GGCGCC | 1 cut(s) | 161 |
| EheI | GGCGCC | 1 cut(s) | 161 |
| ErhI | CCWWGG | 3 cut(s) | 567, 1194, 1355 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1786, 1818, 2496, 2528 |
| FaqI | GGGAC | 2 cut(s) | 671, 1717 |
| FauI | CCCGC | 2 cut(s) | 1136, 1957 |
| FauNDI | CATATG | 1 cut(s) | 2620 |
| FokI | GGATG | 6 cut(s) | 811, 977, 2153, 2432, 2684, 3047 |
| FspBI | CTAG | 8 cut(s) | 93, 228, 480, 624, 1562, 2259, 2780, 2817 |
| GlaI | GCGC | 1 cut(s) | 161 |
| GsuI | CTGGAG | 3 cut(s) | 259, 2616, 2847 |
| HaeII | RGCGCY | 1 cut(s) | 163 |
| HaeIII | GGCC | 7 cut(s) | 37, 574, 1127, 1583, 1879, 2989, 3017 |
| HapII | CCGG | 3 cut(s) | 639, 2302, 2647 |
| HhaI | GCGC | 1 cut(s) | 162 |
| Hin1I | GRCGYC | 1 cut(s) | 160 |
| Hin6I | GCGC | 1 cut(s) | 160 |
| HinP1I | GCGC | 1 cut(s) | 160 |
| HincII | GTYRAC | 2 cut(s) | 3028, 3073 |
| HindII | GTYRAC | 2 cut(s) | 3028, 3073 |
| HindIII | AAGCTT | 2 cut(s) | 1397, 2103 |
| HpaII | CCGG | 3 cut(s) | 639, 2302, 2647 |
| HphI | GGTGA | 3 cut(s) | 410, 505, 821 |
| Hpy166II | GTNNAC | 7 cut(s) | 415, 424, 1711, 2222, 3028, 3073, 3098 |
| Hpy8I | GTNNAC | 7 cut(s) | 415, 424, 1711, 2222, 3028, 3073, 3098 |
| HpyCH4III | ACNGT | 5 cut(s) | 356, 428, 1708, 2405, 2686 |
| HpyCH4IV | ACGT | 2 cut(s) | 2737, 2926 |
| HpyF3I | CTNAG | 9 cut(s) | 164, 260, 803, 852, 1516, 1650, 1854, 2378, 2580 |
| HpySE526I | ACGT | 2 cut(s) | 2737, 2926 |
| Hsp92I | GRCGYC | 1 cut(s) | 160 |
| HspAI | GCGC | 1 cut(s) | 160 |
| KasI | GGCGCC | 1 cut(s) | 159 |
| KpnI | GGTACC | 1 cut(s) | 1296 |
| LguI | GCTCTTC | 1 cut(s) | 1740 |
| LmnI | GCTCC | 2 cut(s) | 1012, 1957 |
| Lsp1109I | GCAGC | 9 cut(s) | 166, 232, 679, 2107, 2317, 2836, 2866, 2937, 3100 |
| MabI | ACCWGGT | 1 cut(s) | 2530 |
| MaeI | CTAG | 8 cut(s) | 93, 228, 480, 624, 1562, 2259, 2780, 2817 |
| MaeII | ACGT | 2 cut(s) | 2737, 2926 |
| MaeIII | GTNAC | 4 cut(s) | 250, 376, 836, 1163 |
| MbiI | CCGCTC | 1 cut(s) | 1952 |
| MfeI | CAATTG | 1 cut(s) | 1833 |
| MflI | RGATCY | 9 cut(s) | 718, 1021, 1359, 1920, 1945, 2310, 2521, 2576, 2935 |
| MhlI | GDGCHC | 4 cut(s) | 1213, 2791, 2827, 3100 |
| MlsI | TGGCCA | 1 cut(s) | 1583 |
| MluNI | TGGCCA | 1 cut(s) | 1583 |
| Mly113I | GGCGCC | 1 cut(s) | 160 |
| MlyI | GAGTC | 5 cut(s) | 100, 218, 1973, 2000, 2090 |
| MmeI | TCCRAC | 3 cut(s) | 243, 2184, 2397 |
| Mox20I | TGGCCA | 1 cut(s) | 1583 |
| MroXI | GAANNNNTTC | 1 cut(s) | 720 |
| MscI | TGGCCA | 1 cut(s) | 1583 |
| MseI | TTAA | 8 cut(s) | 561, 735, 864, 1032, 1089, 1154, 2807, 3066 |
| MslI | CAYNNNNRTG | 7 cut(s) | 834, 845, 959, 1121, 1216, 1661, 2481 |
| Msp20I | TGGCCA | 1 cut(s) | 1583 |
| MspA1I | CMGCKG | 1 cut(s) | 2371 |
| MspI | CCGG | 3 cut(s) | 639, 2302, 2647 |
| MspR9I | CCNGG | 7 cut(s) | 238, 2318, 2337, 2532, 2647, 2648, 2669 |
| MunI | CAATTG | 1 cut(s) | 1833 |
| Mva1269I | GAATGC | 2 cut(s) | 1545, 2075 |
| MvaI | CCWGG | 5 cut(s) | 238, 2318, 2337, 2532, 2669 |
| NarI | GGCGCC | 1 cut(s) | 160 |
| NciI | CCSGG | 2 cut(s) | 2647, 2648 |
| NcoI | CCATGG | 1 cut(s) | 1355 |
| NdeI | CATATG | 1 cut(s) | 2620 |
| NheI | GCTAGC | 1 cut(s) | 2816 |
| NlaIV | GGNNCC | 7 cut(s) | 161, 573, 1212, 1294, 1468, 1947, 2523 |
| NmuCI | GTSAC | 1 cut(s) | 836 |
| NspI | RCATGY | 3 cut(s) | 2416, 2470, 3037 |
| NspV | TTCGAA | 2 cut(s) | 1724, 2770 |
| OliI | CACNNNNGTG | 1 cut(s) | 845 |
| PceI | AGGCCT | 1 cut(s) | 37 |
| PciI | ACATGT | 1 cut(s) | 2466 |
| PciSI | GCTCTTC | 1 cut(s) | 1740 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2818 |
| PctI | GAATGC | 2 cut(s) | 1545, 2075 |
| PdmI | GAANNNNTTC | 1 cut(s) | 720 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1463 |
| PfoI | TCCNGGA | 1 cut(s) | 2667 |
| PinAI | ACCGGT | 1 cut(s) | 2301 |
| PleI | GAGTC | 5 cut(s) | 100, 218, 1972, 1999, 2089 |
| PluTI | GGCGCC | 1 cut(s) | 163 |
| PpsI | GAGTC | 5 cut(s) | 100, 218, 1972, 1999, 2089 |
| PpuMI | RGGWCCY | 1 cut(s) | 96 |
| PscI | ACATGT | 1 cut(s) | 2466 |
| Psp5II | RGGWCCY | 1 cut(s) | 96 |
| Psp6I | CCWGG | 5 cut(s) | 236, 2316, 2335, 2530, 2667 |
| PspGI | CCWGG | 5 cut(s) | 236, 2316, 2335, 2530, 2667 |
| PspN4I | GGNNCC | 7 cut(s) | 161, 573, 1212, 1294, 1468, 1947, 2523 |
| PspPI | GGNCC | 9 cut(s) | 96, 515, 572, 620, 920, 1126, 2299, 2962, 2987 |
| PspPPI | RGGWCCY | 1 cut(s) | 96 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1463, 1871, 2243 |
| PsuI | RGATCY | 9 cut(s) | 718, 1021, 1359, 1920, 1945, 2310, 2521, 2576, 2935 |
| PvuII | CAGCTG | 1 cut(s) | 2371 |
| RsaI | GTAC | 6 cut(s) | 705, 1294, 1655, 1798, 2471, 2699 |
| RsaNI | GTAC | 6 cut(s) | 704, 1293, 1654, 1797, 2470, 2698 |
| RseI | CAYNNNNRTG | 7 cut(s) | 834, 845, 959, 1121, 1216, 1661, 2481 |
| SapI | GCTCTTC | 1 cut(s) | 1740 |
| SaqAI | TTAA | 8 cut(s) | 561, 735, 864, 1032, 1089, 1154, 2807, 3066 |
| Sau96I | GGNCC | 9 cut(s) | 96, 515, 572, 620, 920, 1126, 2299, 2962, 2987 |
| SchI | GAGTC | 5 cut(s) | 100, 218, 1973, 2000, 2090 |
| ScrFI | CCNGG | 7 cut(s) | 238, 2318, 2337, 2532, 2647, 2648, 2669 |
| SduI | GDGCHC | 4 cut(s) | 1213, 2791, 2827, 3100 |
| SexAI | ACCWGGT | 1 cut(s) | 2530 |
| SfcI | CTRYAG | 2 cut(s) | 462, 879 |
| SfoI | GGCGCC | 1 cut(s) | 161 |
| SfuI | TTCGAA | 2 cut(s) | 1724, 2770 |
| SinI | GGWCC | 6 cut(s) | 96, 515, 620, 920, 2299, 2962 |
| SmaI | CCCGGG | 1 cut(s) | 2648 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 834, 845, 959, 1121, 1216, 1661, 2481 |
| SmlI | CTYRAG | 1 cut(s) | 2513 |
| SmoI | CTYRAG | 1 cut(s) | 2513 |
| SseBI | AGGCCT | 1 cut(s) | 37 |
| SsiI | CCGC | 9 cut(s) | 248, 981, 1129, 1150, 1890, 1950, 2248, 2314, 3080 |
| SspDI | GGCGCC | 1 cut(s) | 159 |
| SspI | AATATT | 1 cut(s) | 1263 |
| SspMI | CTAG | 8 cut(s) | 93, 228, 480, 624, 1562, 2259, 2780, 2817 |
| StuI | AGGCCT | 1 cut(s) | 37 |
| StyD4I | CCNGG | 7 cut(s) | 236, 2316, 2335, 2530, 2645, 2646, 2667 |
| StyI | CCWWGG | 3 cut(s) | 567, 1194, 1355 |
| TaaI | ACNGT | 5 cut(s) | 356, 428, 1708, 2405, 2686 |
| TaiI | ACGT | 2 cut(s) | 2740, 2929 |
| TaqI | TCGA | 5 cut(s) | 1552, 1724, 2079, 2770, 3038 |
| TatI | WGTACW | 3 cut(s) | 703, 1653, 1796 |
| TauI | GCSGC | 1 cut(s) | 984 |
| Tru1I | TTAA | 8 cut(s) | 561, 735, 864, 1032, 1089, 1154, 2807, 3066 |
| Tru9I | TTAA | 8 cut(s) | 561, 735, 864, 1032, 1089, 1154, 2807, 3066 |
| TscAI | CASTG | 4 cut(s) | 1442, 1774, 2001, 2871 |
| TseFI | GTSAC | 1 cut(s) | 836 |
| TseI | GCWGC | 9 cut(s) | 179, 245, 692, 2120, 2330, 2849, 2879, 2950, 3113 |
| Tsp45I | GTSAC | 1 cut(s) | 836 |
| TspGWI | ACGGA | 1 cut(s) | 2589 |
| TspMI | CCCGGG | 1 cut(s) | 2646 |
| TspRI | CASTG | 4 cut(s) | 1442, 1774, 2001, 2871 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1463 |
| VneI | GTGCAC | 1 cut(s) | 3096 |
| VpaK11BI | GGWCC | 6 cut(s) | 96, 515, 620, 920, 2299, 2962 |
| XapI | RAATTY | 6 cut(s) | 1001, 1808, 2211, 2269, 2341, 2756 |
| XbaI | TCTAGA | 1 cut(s) | 227 |
| XceI | RCATGY | 3 cut(s) | 2416, 2470, 3037 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1694 |
| XmaI | CCCGGG | 1 cut(s) | 2646 |
| XmnI | GAANNNNTTC | 1 cut(s) | 720 |
| XspI | CTAG | 8 cut(s) | 93, 228, 480, 624, 1562, 2259, 2780, 2817 |