FvH4_3g23730

Fimbrin-1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
16801581 .. 16808130
6550 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23730.t3

Sequence Viewer

Length: 2085 bp
ATGTCGAGTTATACAGGGGTTCTCATTTCTGATCAGTTGCTTCAAAGCCAGTTCACGCAGGTTGAGCTTCGCAGTTTGCATTCCAAATTTACTTCAGTGAAGAATCAGAATGGCATAGTCACTGCTGGAGATTTGCCAGCTTTAATGGTGACATCAAAGGCATTTAAAGAAACGCATACTGAGGAGGAGATTAGGAACATCTTAAGTGGGTTGGGTTCTAACTTGAGTGCTGAAATTGACTTTGAATCCTTCCTTAAGGCATACTTGAATTTGCAAGGTCAAACAACAGCAAAATCTGGTGGTGCAAAAAACTCTTGGTCATTCTTGAAGGCTTCCACAACTACTCTACTTCACACTATCAGTGAATCAGAGAAAGCATCTTATGTTGCTCACATAAACAGTTATCTCGGGGATGACCCATTTCTACAGCAGTTTCTCCCATTGGACCCAGCTACAAATGATCTATTCAATCTTGCAAAAGATGGAGTTCTCTTATGTAAGCTTATAAATGTTGCTGTGCCTGGGACAATAGATGAAAGAGCAATTAACACCAAACGAGTCCTCAACCCCTGGGAGAGGAATGAAAACCATACTCTTTGCCTCAACTCTGCCAAGGCTATTGGCTGCACGGTGGTTAATATTGGCACACAAGACCTCGTTGAAGGAAGACCTCATCTGGTATTGGGATTGATTTCACAAATAATAAAGATCCAACTGTTGGCAGATCTGAACCTTAAGAAGACTCCTCAGCTTGTGGAATTGGTAGATGATAGCAAGGATGTTGAAGAGCTTTTGAGTTTACCACCTGAGAAGGTCTTGTTGAAATGGATGAATTTCCATCTCCAGAAAGCAGGCTACAAGAAGGCAGTTGCGAACTTCTCTTCTGATCTGAAGGATGGAGAGGCTTATGCGTACCTACTTAATGTCCTTGCTCCAGAACACTGCAATCCAGCCACATTGGATGCCAAACCTGACGAAAGAGCAAAGTTGGTTCTTGATCATGCTGAGAGAATGAACTGCAAAAGATATTTATCCCCAAAAGACATTCTTGAGGGTTCTTCAAACTTAAATCTGGCATTTGTGGCACAGATCTTCCACGAAAGGAATGGCCTCACTACAGATAGCAAAAAGATATCTTTTGCAGAGATGATGACAGATGATGTTCAAACATCACGAGAAGAGAGATGCTTCAGGCTGTGGATCAACAGTCTAGGCATTGCGACTTATGTTAATAATGTATTTGAGGATGTGAGAAATGGATGGATTCTCTTAGAGGTGCTTGATAAGGTTTCTCCAGGATCAGTTAACTGGAAGCAAGCATCAAGGCCACCAATCAAGATGCCATTTAGGAAAGTAGAGAATTGCAATCAGGTTGTAAGGATTGGGAAGCAGCTCAAATTGTCTCTGGTGAATGTAGCTGGAAATGATATTGTGCAGGGAAATAAGAAGCTCATACTCGCTTTTCTATGGCAGTTGATGAGGTTTAATATGCTTCAACTCTTGAAGAATCTAAGATCTCACTCTCGAGGAAAGGAGATGACAGATACAGATATTTTAAAGTGGGCTAACAACAAAGTTAATAGCACCGGCCGAACTTCTCAAATGGAGAGTTTTAAGGATAAGAGCCTGTCGAATGGGATTTTCTTCCTTGAGCTTCTCAGTGCTGTGGAGCCTAGGGTTGTCAATTGGAACCTTGTTACCAAGGGTGATAGTGCTGATGAAAAGAAGTTAAATGCTACATACATAGTCAGTGTTGCGCGAAAGCTTGGTTGTTCCATTTTCTTGTTGCCTGAGGACATCATGGAGGTGAATCAGAAGATGCTTCTGACCCTAACAGCCAGCATTATGTTTTGGAGCCTGCAACAACCAGTTGATGGCTCGGAAGCATCTCCATCACCTGCGGATGTATCACCTGCAACATCAATCAGCAGCGAAGATGAAGGCTCTACTTCCCTTGGTGGTGAAATTTCAAACTTGAGTATTGATGACACTGCTTCTGAAGTCTCCTCACAGCTGGACAATGAGGTCAATTCTTTTGGAGATGGGAGCAGGGTGGAAGAGACTGGTTGCTTAGCTGTTAAGTAG

Protein Analysis

695

Amino Acids

76.83

Weight (kDa)

5.73

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 151 - 236 5.9e-17 Calponin homology (CH) domain
CH PF00307 268 - 367 4.1e-22 Calponin homology (CH) domain
CH PF00307 393 - 495 9e-18 Calponin homology (CH) domain
CH PF00307 515 - 616 7.1e-18 Calponin homology (CH) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 506
AarI CACCTGC 2 cut(s) 1906, 1921
AasI GACNNNNNNGTC 1 cut(s) 2024
Acc36I ACCTGC 3 cut(s) 49, 1906, 1921
AccB7I CCANNNNNTGG 2 cut(s) 718, 1874
AccII CGCG 1 cut(s) 1759
AciI CCGC 1 cut(s) 1901
AclWI GGATC 3 cut(s) 703, 1208, 1306
AcoI YGGCCR 1 cut(s) 1588
AcsI RAATTY 4 cut(s) 86, 268, 832, 1965
AcuI CTGAAG 4 cut(s) 78, 911, 1174, 2019
AfaI GTAC 1 cut(s) 914
AfiI CCNNNNNNNGG 3 cut(s) 576, 718, 1874
AflII CTTAAG 3 cut(s) 202, 254, 734
AjnI CCWGG 3 cut(s) 520, 569, 1294
Alw26I GTCTC 3 cut(s) 1407, 2008, 2054
AlwI GGATC 3 cut(s) 703, 1208, 1306
Ama87I CYCGRG 2 cut(s) 407, 1524
AoxI GGCC 3 cut(s) 1108, 1325, 1588
ApeKI GCWGC 3 cut(s) 624, 1390, 1929
ApoI RAATTY 4 cut(s) 86, 268, 832, 1965
AspA2I CCTAGG 1 cut(s) 1673
AspLEI GCGC 1 cut(s) 1759
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 7 cut(s) 160, 1420, 1718, 1819, 1887, 1902, 1973
AvaI CYCGRG 2 cut(s) 407, 1524
AvaII GGWCC 1 cut(s) 445
AvrII CCTAGG 1 cut(s) 1673
AxyI CCTNAGG 1 cut(s) 1791
BauI CACGAG 1 cut(s) 1173
BbsI GAAGAC 2 cut(s) 673, 746
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 3 cut(s) 611, 1402, 1941
BccI CCATC 7 cut(s) 476, 846, 890, 1254, 1868, 1900, 2036
BciT130I CCWGG 3 cut(s) 522, 571, 1296
BclI TGATCA 2 cut(s) 31, 997
BcoDI GTCTC 3 cut(s) 1407, 2008, 2054
BfaI CTAG 2 cut(s) 1211, 1674
BfmI CTRYAG 2 cut(s) 425, 1116
BfrI CTTAAG 3 cut(s) 202, 254, 734
BfuAI ACCTGC 3 cut(s) 49, 1906, 1921
BglII AGATCT 3 cut(s) 724, 1089, 1514
BisI GCNGC 3 cut(s) 625, 1391, 1930
BlnI CCTAGG 1 cut(s) 1673
BlpI GCTNAGC 1 cut(s) 2071
BlsI GCNGC 3 cut(s) 626, 1392, 1931
Bme1390I CCNGG 3 cut(s) 522, 571, 1296
Bme18I GGWCC 1 cut(s) 445
BmeT110I CYCGRG 2 cut(s) 407, 1524
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 4 cut(s) 447, 1671, 1691, 1856
BmrFI CCNGG 3 cut(s) 522, 571, 1296
BmsI GCATC 7 cut(s) 386, 952, 1175, 1328, 1329, 1809, 1895
BpiI GAAGAC 2 cut(s) 673, 746
BpmI CTGGAG 4 cut(s) 147, 827, 918, 1278
Bpu10I CCTNAGC 1 cut(s) 747
Bpu1102I GCTNAGC 1 cut(s) 2071
BpuEI CTTGAG 4 cut(s) 244, 1070, 1670, 1996
BsaBI GATNNNNATC 1 cut(s) 1030
BsaJI CCNNGG 7 cut(s) 521, 569, 570, 612, 1673, 1701, 1954
Bsc4I CCNNNNNNNGG 3 cut(s) 576, 718, 1874
Bse118I RCCGGY 1 cut(s) 1586
Bse1I ACTGG 4 cut(s) 49, 1313, 1868, 2068
Bse21I CCTNAGG 1 cut(s) 1791
Bse3DI GCAATG 1 cut(s) 1215
Bse8I GATNNNNATC 1 cut(s) 1030
BseBI CCWGG 3 cut(s) 522, 571, 1296
BseDI CCNNGG 7 cut(s) 521, 569, 570, 612, 1673, 1701, 1954
BseGI GGATG 8 cut(s) 418, 784, 834, 901, 967, 1252, 1265, 1909
BseJI GATNNNNATC 1 cut(s) 1030
BseLI CCNNNNNNNGG 3 cut(s) 576, 718, 1874
BseMI GCAATG 1 cut(s) 1215
BseMII CTCAG 6 cut(s) 171, 761, 798, 996, 1672, 1782
BseNI ACTGG 4 cut(s) 49, 1313, 1868, 2068
BseRI GAGGAG 4 cut(s) 197, 200, 735, 1996
BseX3I CGGCCG 1 cut(s) 1588
BseXI GCAGC 3 cut(s) 611, 1402, 1941
BseYI CCCAGC 1 cut(s) 448
BsgI GTGCAG 2 cut(s) 610, 1454
Bsh1236I CGCG 1 cut(s) 1759
Bsh1285I CGRYCG 1 cut(s) 1591
BshFI GGCC 3 cut(s) 1110, 1327, 1590
BsiEI CGRYCG 1 cut(s) 1591
BsiHKCI CYCGRG 2 cut(s) 407, 1524
BsiSI CCGG 1 cut(s) 1587
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 3 cut(s) 576, 718, 1874
BsmAI GTCTC 3 cut(s) 1407, 2008, 2054
BsmFI GGGAC 1 cut(s) 538
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 3 cut(s) 1110, 1327, 1590
BsoBI CYCGRG 2 cut(s) 407, 1524
Bsp1720I GCTNAGC 1 cut(s) 2071
BspACI CCGC 1 cut(s) 1901
BspANI GGCC 3 cut(s) 1110, 1327, 1590
BspCNI CTCAG 6 cut(s) 172, 760, 799, 997, 1671, 1783
BspFNI CGCG 1 cut(s) 1759
BspLI GGNNCC 4 cut(s) 447, 1671, 1691, 1856
BspMI ACCTGC 3 cut(s) 49, 1906, 1921
BspPI GGATC 3 cut(s) 703, 1208, 1306
BspQI GCTCTTC 1 cut(s) 780
BspTI CTTAAG 3 cut(s) 202, 254, 734
BsrDI GCAATG 1 cut(s) 1215
BsrFI RCCGGY 1 cut(s) 1586
BsrI ACTGG 4 cut(s) 49, 1313, 1868, 2068
BssAI RCCGGY 1 cut(s) 1586
BssECI CCNNGG 7 cut(s) 521, 569, 570, 612, 1673, 1701, 1954
BssSI CACGAG 1 cut(s) 1173
BssT1I CCWWGG 4 cut(s) 612, 1673, 1701, 1954
Bst2BI CACGAG 1 cut(s) 1173
Bst2UI CCWGG 3 cut(s) 522, 571, 1296
Bst4CI ACNGT 4 cut(s) 401, 631, 717, 1208
Bst6I CTCTTC 4 cut(s) 780, 886, 1173, 2052
BstAFI CTTAAG 3 cut(s) 202, 254, 734
BstC8I GCNNGC 5 cut(s) 138, 853, 1317, 1840, 1859
BstDEI CTNAG 9 cut(s) 180, 747, 807, 1005, 1270, 1511, 1658, 1791, 2071
BstENI CCTNNNNNAGG 1 cut(s) 574
BstF5I GGATG 8 cut(s) 418, 784, 834, 901, 967, 1252, 1265, 1909
BstFNI CGCG 1 cut(s) 1759
BstHHI GCGC 1 cut(s) 1759
BstMAI GTCTC 3 cut(s) 1407, 2008, 2054
BstMCI CGRYCG 1 cut(s) 1591
BstMWI GCNNNNNNNGC 2 cut(s) 64, 1082
BstNI CCWGG 3 cut(s) 522, 571, 1296
BstSCI CCNGG 3 cut(s) 520, 569, 1294
BstSFI CTRYAG 2 cut(s) 425, 1116
BstUI CGCG 1 cut(s) 1759
BstV1I GCAGC 3 cut(s) 611, 1402, 1941
BstV2I GAAGAC 2 cut(s) 673, 746
BstX2I RGATCY 4 cut(s) 708, 724, 1089, 1514
BstYI RGATCY 4 cut(s) 708, 724, 1089, 1514
BstZI CGGCCG 1 cut(s) 1588
Bsu36I CCTNAGG 1 cut(s) 1791
BsuRI GGCC 3 cut(s) 1110, 1327, 1590
BtsCI GGATG 8 cut(s) 418, 784, 834, 901, 967, 1252, 1265, 1909
BtsI GCAGTG 3 cut(s) 120, 940, 1989
BtsIMutI CAGTG 7 cut(s) 102, 120, 367, 940, 1666, 1756, 1989
BveI ACCTGC 3 cut(s) 49, 1906, 1921
Cac8I GCNNGC 5 cut(s) 138, 853, 1317, 1840, 1859
CfoI GCGC 1 cut(s) 1759
Cfr10I RCCGGY 1 cut(s) 1586
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 913
CviAII CATG 2 cut(s) 1001, 1801
CviQI GTAC 1 cut(s) 913
DdeI CTNAG 9 cut(s) 180, 747, 807, 1005, 1270, 1511, 1658, 1791, 2071
DraI TTTAAA 2 cut(s) 166, 1557
DrdI GACNNNNNNGTC 1 cut(s) 2024
DseDI GACNNNNNNGTC 1 cut(s) 2024
EaeI YGGCCR 1 cut(s) 1588
EagI CGGCCG 1 cut(s) 1588
Eam1104I CTCTTC 4 cut(s) 780, 886, 1173, 2052
EarI CTCTTC 4 cut(s) 780, 886, 1173, 2052
EclXI CGGCCG 1 cut(s) 1588
Eco130I CCWWGG 4 cut(s) 612, 1673, 1701, 1954
Eco32I GATATC 1 cut(s) 1134
Eco47I GGWCC 1 cut(s) 445
Eco52I CGGCCG 1 cut(s) 1588
Eco57I CTGAAG 4 cut(s) 78, 911, 1174, 2019
Eco81I CCTNAGG 1 cut(s) 1791
Eco88I CYCGRG 2 cut(s) 407, 1524
EcoNI CCTNNNNNAGG 1 cut(s) 574
EcoRII CCWGG 3 cut(s) 520, 569, 1294
EcoRV GATATC 1 cut(s) 1134
EcoT14I CCWWGG 4 cut(s) 612, 1673, 1701, 1954
ErhI CCWWGG 4 cut(s) 612, 1673, 1701, 1954
FaeI CATG 2 cut(s) 1004, 1804
FalI AAGNNNNNCTT 4 cut(s) 248, 280, 1032, 1064
FaqI GGGAC 1 cut(s) 538
FatI CATG 2 cut(s) 1000, 1800
FbaI TGATCA 2 cut(s) 31, 997
Fnu4HI GCNGC 3 cut(s) 625, 1391, 1930
FokI GGATG 8 cut(s) 425, 791, 841, 908, 974, 1259, 1272, 1916
Fsp4HI GCNGC 3 cut(s) 625, 1391, 1930
FspBI CTAG 2 cut(s) 1211, 1674
GlaI GCGC 1 cut(s) 1758
GluI GCNGC 3 cut(s) 625, 1391, 1930
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 4 cut(s) 147, 827, 918, 1278
HaeIII GGCC 3 cut(s) 1110, 1327, 1590
HapII CCGG 1 cut(s) 1587
HhaI GCGC 1 cut(s) 1759
Hin1II CATG 2 cut(s) 1004, 1804
Hin6I GCGC 1 cut(s) 1757
HinP1I GCGC 1 cut(s) 1757
HincII GTYRAC 1 cut(s) 1306
HindII GTYRAC 1 cut(s) 1306
HindIII AAGCTT 2 cut(s) 500, 1763
HinfI GANTC 8 cut(s) 103, 245, 365, 558, 742, 1264, 1507, 1810
HpaI GTTAAC 1 cut(s) 1306
HpaII CCGG 1 cut(s) 1587
HphI GGTGA 7 cut(s) 160, 1420, 1718, 1819, 1887, 1902, 1973
Hpy166II GTNNAC 3 cut(s) 54, 800, 1306
Hpy188III TCNNGA 9 cut(s) 325, 844, 935, 995, 1049, 1173, 1336, 1501, 1524
Hpy8I GTNNAC 3 cut(s) 54, 800, 1306
HpyAV CCTTC 7 cut(s) 259, 322, 656, 805, 856, 886, 1934
HpyCH4III ACNGT 4 cut(s) 401, 631, 717, 1208
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 1082
HpyF3I CTNAG 9 cut(s) 180, 747, 807, 1005, 1270, 1511, 1658, 1791, 2071
Hsp92II CATG 2 cut(s) 1004, 1804
HspAI GCGC 1 cut(s) 1757
Ksp22I TGATCA 2 cut(s) 31, 997
KspAI GTTAAC 1 cut(s) 1306
LguI GCTCTTC 1 cut(s) 780
LmnI GCTCC 4 cut(s) 937, 1669, 1854, 2046
Lsp1109I GCAGC 3 cut(s) 611, 1402, 1941
LweI GCATC 7 cut(s) 386, 952, 1175, 1328, 1329, 1809, 1895
MaeI CTAG 2 cut(s) 1211, 1674
MaeIII GTNAC 3 cut(s) 118, 148, 1696
MfeI CAATTG 1 cut(s) 1684
MflI RGATCY 4 cut(s) 708, 724, 1089, 1514
MlyI GAGTC 2 cut(s) 567, 736
MmeI TCCRAC 1 cut(s) 736
MslI CAYNNNNRTG 1 cut(s) 1805
MspA1I CMGCKG 1 cut(s) 2014
MspCI CTTAAG 3 cut(s) 202, 254, 734
MspI CCGG 1 cut(s) 1587
MspR9I CCNGG 3 cut(s) 522, 571, 1296
MunI CAATTG 1 cut(s) 1684
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 3 cut(s) 522, 571, 1296
MvnI CGCG 1 cut(s) 1759
MwoI GCNNNNNNNGC 2 cut(s) 64, 1082
NlaIII CATG 2 cut(s) 1004, 1804
NlaIV GGNNCC 4 cut(s) 447, 1671, 1691, 1856
NmuCI GTSAC 2 cut(s) 118, 148
PaeR7I CTCGAG 1 cut(s) 1524
PaqCI CACCTGC 2 cut(s) 1906, 1921
PasI CCCWGGG 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 780
PctI GAATGC 1 cut(s) 79
PfeI GAWTC 6 cut(s) 103, 245, 365, 1264, 1507, 1810
PflMI CCANNNNNTGG 2 cut(s) 718, 1874
PfoI TCCNGGA 1 cut(s) 1294
PkrI GCNGC 3 cut(s) 626, 1392, 1931
PleI GAGTC 2 cut(s) 566, 736
PpsI GAGTC 2 cut(s) 566, 736
PsiI TTATAA 1 cut(s) 506
Psp6I CCWGG 3 cut(s) 520, 569, 1294
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 3 cut(s) 520, 569, 1294
PspN4I GGNNCC 4 cut(s) 447, 1671, 1691, 1856
PspPI GGNCC 1 cut(s) 445
PsuI RGATCY 4 cut(s) 708, 724, 1089, 1514
PvuII CAGCTG 1 cut(s) 2014
RsaI GTAC 1 cut(s) 914
RsaNI GTAC 1 cut(s) 913
RseI CAYNNNNRTG 1 cut(s) 1805
SapI GCTCTTC 1 cut(s) 780
SatI GCNGC 3 cut(s) 625, 1391, 1930
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 2 cut(s) 567, 736
ScrFI CCNGG 3 cut(s) 522, 571, 1296
SfaNI GCATC 7 cut(s) 386, 952, 1175, 1328, 1329, 1809, 1895
SfcI CTRYAG 2 cut(s) 425, 1116
Sfr274I CTCGAG 1 cut(s) 1524
SinI GGWCC 1 cut(s) 445
SlaI CTCGAG 1 cut(s) 1524
SmiMI CAYNNNNRTG 1 cut(s) 1805
SmlI CTYRAG 8 cut(s) 202, 223, 254, 734, 1049, 1524, 1649, 1975
SmoI CTYRAG 8 cut(s) 202, 223, 254, 734, 1049, 1524, 1649, 1975
SsiI CCGC 1 cut(s) 1901
SspI AATATT 1 cut(s) 640
SspMI CTAG 2 cut(s) 1211, 1674
StyD4I CCNGG 3 cut(s) 520, 569, 1294
StyI CCWWGG 4 cut(s) 612, 1673, 1701, 1954
TaaI ACNGT 4 cut(s) 401, 631, 717, 1208
TaqI TCGA 3 cut(s) 5, 1525, 1631
TfiI GAWTC 6 cut(s) 103, 245, 365, 1264, 1507, 1810
TscAI CASTG 7 cut(s) 102, 127, 367, 947, 1666, 1756, 1996
TseFI GTSAC 2 cut(s) 118, 148
TseI GCWGC 3 cut(s) 624, 1390, 1929
Tsp45I GTSAC 2 cut(s) 118, 148
TspDTI ATGAA 6 cut(s) 549, 597, 845, 1028, 1734, 1953
TspRI CASTG 7 cut(s) 102, 127, 367, 947, 1666, 1756, 1996
Van91I CCANNNNNTGG 2 cut(s) 718, 1874
Vha464I CTTAAG 3 cut(s) 202, 254, 734
VpaK11BI GGWCC 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 574
XapI RAATTY 4 cut(s) 86, 268, 832, 1965
XcmI CCANNNNNNNNNTGG 1 cut(s) 1103
XhoI CTCGAG 1 cut(s) 1524
XmaJI CCTAGG 1 cut(s) 1673
XspI CTAG 2 cut(s) 1211, 1674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.