Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009443.1

Orthogroup ID

OG0003512

Physical Location & Seq

Genomic Coordinates Forward (+)

58877 .. 61831

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009443.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

atgagaacctgtagttctctactggatactgctgcagctttactggatggagaggcttatgcgtatctacttaatgttcttgctccagaacactgcaatccagccacattggatgccaaacccgacgaaagagcaaaattggttcttgatcatgctgagagaatgaactgcaaaagatatttatccccaaaagacattattgagggttcttcaaacttaaatctggcatttgtggcacagatcttccatgaaaggaatggtctctctacagacagcaaaaagatatcttttgcagagatgatgacagatgatgttcaaacatcacgagaagagagatgcttcaggctgtggatcaacagtctaggcattgtgagttacgttaataatgtattcgaggatgtgagaaatggatggattctcttagaagtgcttgataaggtttctccaggatcggttaactggaagcaagcatcaaggcctccaatcaagatgccatttaggaaagtagagaactgcaatcaggttgtaaggattgggaagcagctcaaattttctctggtgaatgttgctggaaatgatattgtgcagggaaacaagaagctcatacttgcttttctatggcagttgatgaggtttaatatgcttcaacttttgaggaatctaagatcccactcccgaggaaaggagatgacagatgcagatattttaaagtgggctaacaacaaagttaaaagcacgggcagaacttctcgaatggagagttttaaggataaaagcctgtcgaatggaattttcttccttgagcttctcagtgctgtggagcctagggttgtcaattggaaccttgtcaccaagggtgaaagtgctgatgaaaagaagttaaatgctacatacatagtcagtgttgcgcgaaagcttggttgttccattttcttgttgcctgaggacatcatggaggtgaaccagaagatgcttctgactctaacagccagcattatgttttggagcctgcaacaaccagttgatgactcggaagcatctccatcccctgcggatgtgtcacctgcaacatcaatcagtggcgaggatgaaggaacttcttccctcggtggtgaaatttcaaacttgagtattgacgacactgcttctgaagtctcctcacagctcgacactgaggtcacttcttttgaagatgggagcagggtggaagagactggttgcatatctgttaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0007623 GO:0008092 GO:0008150 GO:0009987 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0032432 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048511 GO:0051015 GO:0051017 GO:0051639 GO:0051764 GO:0061572 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

411

Amino Acids

45.75

Weight (kDa)

5.41

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT5G55400 AT5G55400 AT5G55400
fragaria_vesca	FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730
malus_domestica	MD03G1190800.v1.1 MD04G1101600.v1.1 MD11G1207500.v1.1
prunus_persica	Prupe.4G227900_v2.0.a1
pyrus_communis	pycom03g14400 pycom03g14410 pycom11g18070
rosa_chinensis	RchiOBHm_Chr5g0041891
rosa_laevigata	RLG00000034102 RLG00000034103
rosa_multiflora	Rmu_sc0009443.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038650
rosa_rugosa	Rorug05G0196900 Rorug05G0197000
rosa_samantha	Rh5AG281500 Rh5BG287100 Rh5CG318700 Rh5DG295800
rosa_wichuraiana	Rw0G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1072
AasI	GACNNNNNNGTC	1 cut(s)	1175
Acc36I	ACCTGC	1 cut(s)	1072
AccII	CGCG	1 cut(s)	910
AciI	CCGC	1 cut(s)	1052
AclWI	GGATC	3 cut(s)	359, 457, 660
AcsI	RAATTY	3 cut(s)	548, 789, 1116
AcuI	CTGAAG	2 cut(s)	325, 1170
AfiI	CCNNNNNNNGG	1 cut(s)	682
AgsI	TTSAA	5 cut(s)	213, 317, 647, 1122, 1190
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	6 cut(s)	38, 544, 601, 805, 916, 1165
AluI	AGCT	6 cut(s)	38, 544, 601, 805, 916, 1165
Alw26I	GTCTC	3 cut(s)	266, 1159, 1205
AlwI	GGATC	3 cut(s)	359, 457, 660
Ama87I	CYCGRG	1 cut(s)	675
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	3 cut(s)	32, 35, 541
ApoI	RAATTY	3 cut(s)	548, 789, 1116
Asp700I	GAANNNNTTC	1 cut(s)	1099
AspA2I	CCTAGG	1 cut(s)	824
AspLEI	GCGC	1 cut(s)	910
AsuHPI	GGTGA	6 cut(s)	571, 841, 869, 970, 1053, 1124
AvaI	CYCGRG	1 cut(s)	675
AvrII	CCTAGG	1 cut(s)	824
AxyI	CCTNAGG	1 cut(s)	942
BauI	CACGAG	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	19, 47, 553
BccI	CCATC	4 cut(s)	41, 405, 1051, 1187
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	19
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	3 cut(s)	266, 1159, 1205
BfaI	CTAG	2 cut(s)	362, 825
BfmI	CTRYAG	3 cut(s)	10, 33, 267
BfuAI	ACCTGC	1 cut(s)	1072
BfuI	GTATCC	1 cut(s)	19
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	3 cut(s)	33, 36, 542
BlnI	CCTAGG	1 cut(s)	824
BlsI	GCNGC	3 cut(s)	34, 37, 543
Bme1390I	CCNGG	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	675
BmiI	GGNNCC	3 cut(s)	822, 842, 1007
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	7 cut(s)	103, 326, 479, 480, 685, 960, 1046
BpmI	CTGGAG	2 cut(s)	69, 429
BpuEI	CTTGAG	2 cut(s)	821, 1147
BsaBI	GATNNNNATC	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	4 cut(s)	676, 824, 852, 1105
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
Bse1I	ACTGG	5 cut(s)	27, 48, 464, 1019, 1219
Bse21I	CCTNAGG	1 cut(s)	942
Bse8I	GATNNNNATC	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	4 cut(s)	676, 824, 852, 1105
BseGI	GGATG	7 cut(s)	52, 118, 403, 416, 1043, 1060, 1093
BseJI	GATNNNNATC	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMII	CTCAG	4 cut(s)	147, 823, 933, 1164
BseNI	ACTGG	5 cut(s)	27, 48, 464, 1019, 1219
BseRI	GAGGAG	1 cut(s)	1147
BseXI	GCAGC	3 cut(s)	19, 47, 553
BsgI	GTGCAG	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	910
BshFI	GGCC	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	675
BslI	CCNNNNNNNGG	1 cut(s)	682
BsmAI	GTCTC	3 cut(s)	266, 1159, 1205
BsnI	GGCC	1 cut(s)	478
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	675
Bsp143I	GATC	5 cut(s)	148, 240, 351, 449, 665
BspACI	CCGC	1 cut(s)	1052
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	4 cut(s)	148, 822, 934, 1165
BspFNI	CGCG	1 cut(s)	910
BspLI	GGNNCC	3 cut(s)	822, 842, 1007
BspMAI	CTGCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	1072
BspPI	GGATC	3 cut(s)	359, 457, 660
BspTNI	GGTCTC	1 cut(s)	266
BsrI	ACTGG	5 cut(s)	27, 48, 464, 1019, 1219
BssECI	CCNNGG	4 cut(s)	676, 824, 852, 1105
BssMI	GATC	5 cut(s)	148, 240, 351, 449, 665
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	2 cut(s)	824, 852
Bst2BI	CACGAG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	2 cut(s)	324, 1203
BstC8I	GCNNGC	3 cut(s)	468, 991, 1010
BstDEI	CTNAG	6 cut(s)	156, 421, 662, 809, 942, 1173
BstF5I	GGATG	7 cut(s)	52, 118, 403, 416, 1043, 1060, 1093
BstFNI	CGCG	1 cut(s)	910
BstHHI	GCGC	1 cut(s)	910
BstKTI	GATC	5 cut(s)	151, 243, 354, 452, 668
BstMAI	GTCTC	3 cut(s)	266, 1159, 1205
BstMBI	GATC	5 cut(s)	148, 240, 351, 449, 665
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	3 cut(s)	10, 33, 267
BstUI	CGCG	1 cut(s)	910
BstV1I	GCAGC	3 cut(s)	19, 47, 553
BstX2I	RGATCY	2 cut(s)	240, 665
BstYI	RGATCY	2 cut(s)	240, 665
Bsu36I	CCTNAGG	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	478
BtsCI	GGATG	7 cut(s)	52, 118, 403, 416, 1043, 1060, 1093
BtsI	GCAGTG	2 cut(s)	91, 1140
BtsIMutI	CAGTG	6 cut(s)	91, 817, 907, 1084, 1140, 1170
BveI	ACCTGC	1 cut(s)	1072
Cac8I	GCNNGC	3 cut(s)	468, 991, 1010
CfoI	GCGC	1 cut(s)	910
CviAII	CATG	3 cut(s)	152, 248, 952
DdeI	CTNAG	6 cut(s)	156, 421, 662, 809, 942, 1173
DpnI	GATC	5 cut(s)	150, 242, 353, 451, 667
DpnII	GATC	5 cut(s)	148, 240, 351, 449, 665
DraI	TTTAAA	1 cut(s)	708
DrdI	GACNNNNNNGTC	1 cut(s)	1175
DseDI	GACNNNNNNGTC	1 cut(s)	1175
Eam1104I	CTCTTC	2 cut(s)	324, 1203
EarI	CTCTTC	2 cut(s)	324, 1203
Eco130I	CCWWGG	2 cut(s)	824, 852
Eco147I	AGGCCT	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	285
Eco57I	CTGAAG	2 cut(s)	325, 1170
Eco81I	CCTNAGG	1 cut(s)	942
Eco88I	CYCGRG	1 cut(s)	675
EcoRII	CCWGG	1 cut(s)	445
EcoRV	GATATC	1 cut(s)	285
EcoT14I	CCWWGG	2 cut(s)	824, 852
ErhI	CCWWGG	2 cut(s)	824, 852
FaeI	CATG	3 cut(s)	155, 251, 955
FatI	CATG	3 cut(s)	151, 247, 951
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	33, 36, 542
FokI	GGATG	7 cut(s)	59, 125, 410, 423, 1030, 1067, 1100
Fsp4HI	GCNGC	3 cut(s)	33, 36, 542
FspBI	CTAG	2 cut(s)	362, 825
GlaI	GCGC	1 cut(s)	909
GluI	GCNGC	3 cut(s)	33, 36, 542
GsuI	CTGGAG	2 cut(s)	69, 429
HaeIII	GGCC	1 cut(s)	478
HhaI	GCGC	1 cut(s)	910
Hin1II	CATG	3 cut(s)	155, 251, 955
Hin6I	GCGC	1 cut(s)	908
HinP1I	GCGC	1 cut(s)	908
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	4 cut(s)	415, 658, 979, 1028
HpaI	GTTAAC	1 cut(s)	457
HphI	GGTGA	6 cut(s)	571, 841, 869, 970, 1053, 1124
Hpy166II	GTNNAC	2 cut(s)	457, 961
Hpy188I	TCNGA	3 cut(s)	978, 1033, 1150
Hpy188III	TCNNGA	6 cut(s)	86, 146, 324, 487, 675, 750
Hpy8I	GTNNAC	2 cut(s)	457, 961
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	1085
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	6 cut(s)	156, 421, 662, 809, 942, 1173
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	3 cut(s)	155, 251, 955
HspAI	GCGC	1 cut(s)	908
Ksp22I	TGATCA	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	5 cut(s)	148, 240, 351, 449, 665
LmnI	GCTCC	4 cut(s)	88, 820, 1005, 1197
Lsp1109I	GCAGC	3 cut(s)	19, 47, 553
LweI	GCATC	7 cut(s)	103, 326, 479, 480, 685, 960, 1046
MaeI	CTAG	2 cut(s)	362, 825
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	4 cut(s)	374, 847, 1059, 1177
MalI	GATC	5 cut(s)	150, 242, 353, 451, 667
MboI	GATC	5 cut(s)	148, 240, 351, 449, 665
MboII	GAAGA	8 cut(s)	201, 235, 341, 787, 979, 1092, 1202, 1220
MfeI	CAATTG	1 cut(s)	835
MflI	RGATCY	2 cut(s)	240, 665
MluCI	AATT	5 cut(s)	137, 548, 789, 835, 1116
MlyI	GAGTC	2 cut(s)	973, 1022
MroXI	GAANNNNTTC	1 cut(s)	1099
MslI	CAYNNNNRTG	1 cut(s)	956
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	1 cut(s)	835
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	910
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	5 cut(s)	148, 240, 351, 449, 665
NlaIII	CATG	3 cut(s)	155, 251, 955
NlaIV	GGNNCC	3 cut(s)	822, 842, 1007
NmuCI	GTSAC	3 cut(s)	847, 1059, 1177
PaqCI	CACCTGC	1 cut(s)	1072
PceI	AGGCCT	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	1099
PfeI	GAWTC	2 cut(s)	415, 658
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	3 cut(s)	34, 37, 543
PleI	GAGTC	2 cut(s)	973, 1022
PpsI	GAGTC	2 cut(s)	973, 1022
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	3 cut(s)	822, 842, 1007
PstI	CTGCAG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	240, 665
RseI	CAYNNNNRTG	1 cut(s)	956
SatI	GCNGC	3 cut(s)	33, 36, 542
Sau3AI	GATC	5 cut(s)	148, 240, 351, 449, 665
SchI	GAGTC	2 cut(s)	973, 1022
ScrFI	CCNGG	1 cut(s)	447
SfaNI	GCATC	7 cut(s)	103, 326, 479, 480, 685, 960, 1046
SfcI	CTRYAG	3 cut(s)	10, 33, 267
SmiMI	CAYNNNNRTG	1 cut(s)	956
SmlI	CTYRAG	2 cut(s)	800, 1126
SmoI	CTYRAG	2 cut(s)	800, 1126
Sse9I	AATT	5 cut(s)	137, 548, 789, 835, 1116
SseBI	AGGCCT	1 cut(s)	478
SsiI	CCGC	1 cut(s)	1052
SspMI	CTAG	2 cut(s)	362, 825
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	2 cut(s)	824, 852
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	4 cut(s)	393, 751, 782, 1167
TasI	AATT	5 cut(s)	137, 548, 789, 835, 1116
TfiI	GAWTC	2 cut(s)	415, 658
TscAI	CASTG	6 cut(s)	98, 817, 907, 1084, 1147, 1177
TseFI	GTSAC	3 cut(s)	847, 1059, 1177
TseI	GCWGC	3 cut(s)	32, 35, 541
Tsp45I	GTSAC	3 cut(s)	847, 1059, 1177
TspDTI	ATGAA	4 cut(s)	179, 264, 885, 1104
TspRI	CASTG	6 cut(s)	98, 817, 907, 1084, 1147, 1177
XapI	RAATTY	3 cut(s)	548, 789, 1116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmaJI	CCTAGG	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	1099
XspI	CTAG	2 cut(s)	362, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.