Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003512

Physical Location & Seq

Genomic Coordinates Reverse (-)

36776775 .. 36778979

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATGACAGATGATGTTCAAACATCACGAGAAGAGAGATGCTTCAGGCTGTGGATCAACAGTCTAGGCATTGTGAGTTACGTTAATAATGTATTCGAGGATGTGAGAAATGGATGGATTCTCTTAGAAGTGCTTGATAAGGTTTCTCCAGGATCAGTTAGCTGGAAGCAAGCATCAAGGCCTCCAATCAAGATGCCATTTAGGAAAGTAGAGAATTGCAATCAGGTTGTAAGGATTGGGAAGCAGCTCAAATTTTCTCTGGTGAATGTAGCTGGAAATGATATTGTGCAGGGAAACAAGAAGCTCATACTTGCTTTTCTATGGCAGTTGATGAGGTTTAATATGCTTCAACTTTTGAGGAATCTAAGATCTCACTCCCGAGGAAAGGAGATGACAGATGCAGATATTTTAAAGTGGGCTAACAACAAAGTTAAAAGCACGGGCAGAACTTCTCGAATGGAGAGTTTTAAGGATAAGAGCCTGTCGAATGGAATTTTCTTCCTTGAGCTTCTCAGTGCTGTGGAGCCTAGGGTTGTCAATTGGAACCTTGTTACCAAGGGTGAAAGTGCTGATGAAAAGAAGTTAAATGCTACATACATAGTCAGTGTTGCGCGAAAGCTTGGTTGTTCCATTTTCTTGTTGCCTGAGGACATCATGGAGGTGAACCAGAAGATGCTTCTGACCCTAACAGCCAGCATTATGTATTGGAGCCTGCAACAACCAGTTGATGACTCGGAAGCATCTCCATCCCCTGCGGATGTGTCACCTGCAACATCAATCAGTGGCGAGGATGAAGGAACTTCTTCCCTTGGTGGTGAAATTTCAAACTTGAGTATTGACGACACTGCTTCTGAAGTCTCCTCACAGCTCGACACTGAGGTCGCTTCTTTTGAAGATGGAAGCAGGGTGGAAGAGACAGGTTGCATAGCTGTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0007623 GO:0008092 GO:0008150 GO:0009987 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0032432 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048511 GO:0051015 GO:0051017 GO:0051639 GO:0051764 GO:0061572 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

313

Amino Acids

34.79

Weight (kDa)

5.37

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	12 - 113	1.3e-17	Calponin homology (CH) domain
CH	PF00307	133 - 235	7.6e-19	Calponin homology (CH) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT5G55400 AT5G55400 AT5G55400
fragaria_vesca	FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730
malus_domestica	MD03G1190800.v1.1 MD04G1101600.v1.1 MD11G1207500.v1.1
prunus_persica	Prupe.4G227900_v2.0.a1
pyrus_communis	pycom03g14400 pycom03g14410 pycom11g18070
rosa_chinensis	RchiOBHm_Chr5g0041891
rosa_laevigata	RLG00000034102 RLG00000034103
rosa_multiflora	Rmu_sc0009443.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038650
rosa_rugosa	Rorug05G0196900 Rorug05G0197000
rosa_samantha	Rh5AG281500 Rh5BG287100 Rh5CG318700 Rh5DG295800
rosa_wichuraiana	Rw0G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	775
AasI	GACNNNNNNGTC	1 cut(s)	878
Acc36I	ACCTGC	1 cut(s)	775
AccII	CGCG	1 cut(s)	613
AciI	CCGC	1 cut(s)	755
AclWI	GGATC	2 cut(s)	62, 160
AcsI	RAATTY	3 cut(s)	251, 492, 819
AcuI	CTGAAG	2 cut(s)	28, 873
AfiI	CCNNNNNNNGG	1 cut(s)	385
AgsI	TTSAA	4 cut(s)	20, 350, 825, 893
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	8 cut(s)	162, 247, 272, 304, 508, 619, 868, 929
AluI	AGCT	8 cut(s)	162, 247, 272, 304, 508, 619, 868, 929
Alw26I	GTCTC	2 cut(s)	862, 908
AlwI	GGATC	2 cut(s)	62, 160
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	3 cut(s)	251, 492, 819
Asp700I	GAANNNNTTC	1 cut(s)	802
AspA2I	CCTAGG	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	613
AsuHPI	GGTGA	5 cut(s)	274, 572, 673, 756, 827
AvaI	CYCGRG	1 cut(s)	378
AvrII	CCTAGG	1 cut(s)	527
AxyI	CCTNAGG	1 cut(s)	645
BauI	CACGAG	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	3 cut(s)	108, 754, 890
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	862, 908
BfaI	CTAG	2 cut(s)	65, 528
BfuAI	ACCTGC	1 cut(s)	775
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	1 cut(s)	245
BlnI	CCTAGG	1 cut(s)	527
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	378
BmiI	GGNNCC	3 cut(s)	525, 545, 710
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	6 cut(s)	29, 182, 183, 388, 663, 749
BpmI	CTGGAG	1 cut(s)	132
BpuEI	CTTGAG	2 cut(s)	524, 850
BsaJI	CCNNGG	4 cut(s)	379, 527, 555, 808
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	722
Bse21I	CCTNAGG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	4 cut(s)	379, 527, 555, 808
BseGI	GGATG	5 cut(s)	106, 119, 746, 763, 796
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	3 cut(s)	526, 636, 867
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	1 cut(s)	850
BseXI	GCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	613
BshFI	GGCC	1 cut(s)	181
BsiHKCI	CYCGRG	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	2 cut(s)	862, 908
BsnI	GGCC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	54, 152, 368
BspACI	CCGC	1 cut(s)	755
BspANI	GGCC	1 cut(s)	181
BspCNI	CTCAG	3 cut(s)	525, 637, 868
BspFNI	CGCG	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	525, 545, 710
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	2 cut(s)	62, 160
BsrI	ACTGG	1 cut(s)	722
BssECI	CCNNGG	4 cut(s)	379, 527, 555, 808
BssMI	GATC	3 cut(s)	54, 152, 368
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	3 cut(s)	527, 555, 808
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	2 cut(s)	27, 906
BstC8I	GCNNGC	3 cut(s)	171, 694, 713
BstDEI	CTNAG	5 cut(s)	124, 365, 512, 645, 876
BstF5I	GGATG	5 cut(s)	106, 119, 746, 763, 796
BstFNI	CGCG	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	3 cut(s)	57, 155, 371
BstMAI	GTCTC	2 cut(s)	862, 908
BstMBI	GATC	3 cut(s)	54, 152, 368
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	181
BtsCI	GGATG	5 cut(s)	106, 119, 746, 763, 796
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	5 cut(s)	520, 610, 787, 843, 873
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	3 cut(s)	171, 694, 713
CfoI	GCGC	1 cut(s)	613
CviAII	CATG	1 cut(s)	655
DdeI	CTNAG	5 cut(s)	124, 365, 512, 645, 876
DpnI	GATC	3 cut(s)	56, 154, 370
DpnII	GATC	3 cut(s)	54, 152, 368
DraI	TTTAAA	1 cut(s)	411
DrdI	GACNNNNNNGTC	1 cut(s)	878
DseDI	GACNNNNNNGTC	1 cut(s)	878
Eam1104I	CTCTTC	2 cut(s)	27, 906
EarI	CTCTTC	2 cut(s)	27, 906
Eco130I	CCWWGG	3 cut(s)	527, 555, 808
Eco147I	AGGCCT	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	28, 873
Eco81I	CCTNAGG	1 cut(s)	645
Eco88I	CYCGRG	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	3 cut(s)	527, 555, 808
ErhI	CCWWGG	3 cut(s)	527, 555, 808
FaeI	CATG	1 cut(s)	658
FaiI	YATR	8 cut(s)	308, 322, 344, 595, 599, 656, 701, 926
FatI	CATG	1 cut(s)	654
Fnu4HI	GCNGC	1 cut(s)	245
FokI	GGATG	5 cut(s)	113, 126, 733, 770, 803
Fsp4HI	GCNGC	1 cut(s)	245
FspBI	CTAG	2 cut(s)	65, 528
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	1 cut(s)	658
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	3 cut(s)	118, 361, 731
HphI	GGTGA	5 cut(s)	274, 572, 673, 756, 827
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	3 cut(s)	681, 736, 853
Hpy188III	TCNNGA	4 cut(s)	27, 190, 378, 453
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	1 cut(s)	788
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	6 cut(s)	219, 289, 401, 715, 770, 924
HpyF3I	CTNAG	5 cut(s)	124, 365, 512, 645, 876
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	658
HspAI	GCGC	1 cut(s)	611
Kzo9I	GATC	3 cut(s)	54, 152, 368
LmnI	GCTCC	2 cut(s)	523, 708
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	6 cut(s)	29, 182, 183, 388, 663, 749
MaeI	CTAG	2 cut(s)	65, 528
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	77, 550, 762
MalI	GATC	3 cut(s)	56, 154, 370
MboI	GATC	3 cut(s)	54, 152, 368
MboII	GAAGA	6 cut(s)	44, 490, 682, 795, 905, 923
MfeI	CAATTG	1 cut(s)	538
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	5 cut(s)	214, 251, 492, 538, 819
MlyI	GAGTC	1 cut(s)	725
MroXI	GAANNNNTTC	1 cut(s)	802
MseI	TTAA	7 cut(s)	84, 339, 410, 432, 468, 584, 933
MslI	CAYNNNNRTG	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	538
MvaI	CCWGG	1 cut(s)	150
MvnI	CGCG	1 cut(s)	613
NdeII	GATC	3 cut(s)	54, 152, 368
NlaIII	CATG	1 cut(s)	658
NlaIV	GGNNCC	3 cut(s)	525, 545, 710
NmuCI	GTSAC	1 cut(s)	762
PaqCI	CACCTGC	1 cut(s)	775
PceI	AGGCCT	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	802
PfeI	GAWTC	2 cut(s)	118, 361
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	525, 545, 710
PsuI	RGATCY	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	7 cut(s)	84, 339, 410, 432, 468, 584, 933
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	3 cut(s)	54, 152, 368
SchI	GAGTC	1 cut(s)	725
ScrFI	CCNGG	1 cut(s)	150
SfaNI	GCATC	6 cut(s)	29, 182, 183, 388, 663, 749
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	503, 829
SmoI	CTYRAG	2 cut(s)	503, 829
Sse9I	AATT	5 cut(s)	214, 251, 492, 538, 819
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	1 cut(s)	755
SspMI	CTAG	2 cut(s)	65, 528
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	3 cut(s)	527, 555, 808
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	96, 454, 485, 870
TasI	AATT	5 cut(s)	214, 251, 492, 538, 819
TfiI	GAWTC	2 cut(s)	118, 361
Tru1I	TTAA	7 cut(s)	84, 339, 410, 432, 468, 584, 933
Tru9I	TTAA	7 cut(s)	84, 339, 410, 432, 468, 584, 933
TscAI	CASTG	5 cut(s)	520, 610, 787, 850, 880
TseFI	GTSAC	1 cut(s)	762
TseI	GCWGC	1 cut(s)	244
Tsp45I	GTSAC	1 cut(s)	762
TspDTI	ATGAA	2 cut(s)	588, 807
TspRI	CASTG	5 cut(s)	520, 610, 787, 850, 880
XapI	RAATTY	3 cut(s)	251, 492, 819
XmaJI	CCTAGG	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	802
XspI	CTAG	2 cut(s)	65, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.