Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003512

Physical Location & Seq

Genomic Coordinates Reverse (-)

36779124 .. 36781804

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034103

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCGAGTTATGCAGGTGTGCACATTTCTGATCAGTGGCTTCAAAGCCAGTTCACGCAGGTTGAGCTTCGCAGTTTGGAATCCAAATTTACTTCAGTGAAGAATCAGAATGGCATAGTCACTGCTGGAGATTTGCCGGCTTTAATGGTGACATCAAAGGCATTTAAAGAAACACATTCTGAGGAGGAGATTAGGAACATCTTAAGTGGGTTGGGTTCTAACTTGAGTGATGAAATTGACTTTGAATCATTCCTTAAGGCATACTTGAATTTGCAAGGTCAAACAACAGTAAAATCTGGTGGTTCAAAGAACTCTTGGTCATTCTTGAAGGCTTCCACAACTACCCTACTTCACACCATCAGTGAATCAGAGAAAGCATCTTATGTTGCTCACATAAACAGTTATCTCGGTAATGACCCATTTCTACAGCAGTTCCTCCCATTGGACCCAGCTACAAATGATCTATTCAATCTTGCAAAAGATGGAGTTCTCTTATGTAAGCTTATAAATGTTGCTGTGCCCGGGACAATAGATGAAAGAGCAATTAACACCAAACGGATCCTCAACCCCTGGGAGAGGAATGAAAACCATACTCTCTGCCTCAACTCTGCCAAGGCCATTGGCTGCACGGTGGTTAATATTGGCACACAAGACCTGGTTGAAGGAAGACCTCATCTGGTATTGGGATTGATTTCTCAAATAATAAAGATCCAATTGTTGGCAGATCTGAACCTTAAGAAGACTCCTCAGCTTGTGGAATTGGTAGATGATAGCAAGGATGTTGAAGAGCTTTTGAGTTTACCACCTGAGAAGGTCTTATTGAAGTGGATGAATTTCCATCTCCAGAAAGCAGGCTACAAGAAGGCAGTTGCAAACTTCTCTTCTGATCTGAAGGATGGAGAGGCTTATGCATATCTACTTAATGTTCTTGCTCCAGAACACTGCAATCCAGCCACATTGGATGCCAAACCCGACGAAAGAGCAAAATTGGTTGTTAAACGAGACCATGACACCAAACTCCCTGACAAGGAAGCATTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0007623 GO:0008092 GO:0008150 GO:0009987 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0032432 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048511 GO:0051015 GO:0051017 GO:0051639 GO:0051764 GO:0061572 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

348

Amino Acids

38.44

Weight (kDa)

5.76

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CH	PF00307	145 - 236	1.6e-17	Calponin homology (CH) domain
CH	PF00307	268 - 331	6.4e-13	Calponin homology (CH) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT5G55400 AT5G55400 AT5G55400
fragaria_vesca	FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730
malus_domestica	MD03G1190800.v1.1 MD04G1101600.v1.1 MD11G1207500.v1.1
prunus_persica	Prupe.4G227900_v2.0.a1
pyrus_communis	pycom03g14400 pycom03g14410 pycom11g18070
rosa_chinensis	RchiOBHm_Chr5g0041891
rosa_laevigata	RLG00000034102 RLG00000034103
rosa_multiflora	Rmu_sc0009443.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038650
rosa_rugosa	Rorug05G0196900 Rorug05G0197000
rosa_samantha	Rh5AG281500 Rh5BG287100 Rh5CG318700 Rh5DG295800
rosa_wichuraiana	Rw0G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AarI	CACCTGC	1 cut(s)	5
Acc36I	ACCTGC	2 cut(s)	5, 49
AccB7I	CCANNNNNTGG	1 cut(s)	718
AclWI	GGATC	3 cut(s)	553, 566, 703
AcsI	RAATTY	3 cut(s)	86, 268, 832
AcuI	CTGAAG	2 cut(s)	78, 911
AfiI	CCNNNNNNNGG	4 cut(s)	442, 576, 718, 1027
AflII	CTTAAG	3 cut(s)	202, 254, 734
AgsI	TTSAA	9 cut(s)	44, 245, 268, 306, 328, 469, 662, 785, 823
AjnI	CCWGG	2 cut(s)	569, 654
AluBI	AGCT	5 cut(s)	67, 452, 502, 751, 790
AluI	AGCT	5 cut(s)	67, 452, 502, 751, 790
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	996
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	3 cut(s)	553, 566, 703
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	615
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	624
ApoI	RAATTY	3 cut(s)	86, 268, 832
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	2 cut(s)	522, 523
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	445
BaeGI	GKGCMC	2 cut(s)	24, 522
BamHI	GGATCC	1 cut(s)	558
BbsI	GAAGAC	2 cut(s)	673, 746
Bbv12I	GWGCWC	1 cut(s)	24
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	611
BccI	CCATC	4 cut(s)	365, 476, 846, 890
BciT130I	CCWGG	2 cut(s)	571, 656
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	2 cut(s)	522, 523
BcoDI	GTCTC	1 cut(s)	996
BfmI	CTRYAG	1 cut(s)	425
BfrI	CTTAAG	3 cut(s)	202, 254, 734
BfuAI	ACCTGC	2 cut(s)	5, 49
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	1 cut(s)	625
BlsI	GCNGC	1 cut(s)	626
Bme1390I	CCNGG	4 cut(s)	522, 523, 571, 656
Bme18I	GGWCC	1 cut(s)	445
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	2 cut(s)	447, 560
BmrFI	CCNGG	4 cut(s)	522, 523, 571, 656
BmsI	GCATC	2 cut(s)	386, 952
BpiI	GAAGAC	2 cut(s)	673, 746
BpmI	CTGGAG	3 cut(s)	147, 827, 918
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	2 cut(s)	522, 523
BsaI	GGTCTC	1 cut(s)	996
BsaJI	CCNNGG	4 cut(s)	521, 569, 570, 612
Bsc4I	CCNNNNNNNGG	4 cut(s)	442, 576, 718, 1027
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	571, 656
BseDI	CCNNGG	4 cut(s)	521, 569, 570, 612
BseGI	GGATG	4 cut(s)	784, 834, 901, 967
BseLI	CCNNNNNNNGG	4 cut(s)	442, 576, 718, 1027
BseMII	CTCAG	3 cut(s)	171, 761, 798
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	3 cut(s)	197, 200, 735
BseSI	GKGCMC	2 cut(s)	24, 522
BseXI	GCAGC	1 cut(s)	611
BseYI	CCCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	610
BshFI	GGCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	2 cut(s)	137, 522
BslFI	GGGAC	1 cut(s)	538
BslI	CCNNNNNNNGG	4 cut(s)	442, 576, 718, 1027
BsmAI	GTCTC	1 cut(s)	996
BsmFI	GGGAC	1 cut(s)	538
BsnI	GGCC	1 cut(s)	617
Bso31I	GGTCTC	1 cut(s)	996
BsoBI	CYCGRG	1 cut(s)	521
Bsp1286I	GDGCHC	2 cut(s)	24, 522
Bsp143I	GATC	6 cut(s)	31, 460, 558, 708, 724, 886
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	3 cut(s)	172, 760, 799
BspLI	GGNNCC	2 cut(s)	447, 560
BspMI	ACCTGC	2 cut(s)	5, 49
BspPI	GGATC	3 cut(s)	553, 566, 703
BspQI	GCTCTTC	1 cut(s)	780
BspTI	CTTAAG	3 cut(s)	202, 254, 734
BspTNI	GGTCTC	1 cut(s)	996
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	4 cut(s)	521, 569, 570, 612
BssMI	GATC	6 cut(s)	31, 460, 558, 708, 724, 886
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	571, 656
Bst4CI	ACNGT	3 cut(s)	289, 401, 631
Bst6I	CTCTTC	2 cut(s)	780, 886
BstAFI	CTTAAG	3 cut(s)	202, 254, 734
BstC8I	GCNNGC	2 cut(s)	138, 853
BstDEI	CTNAG	3 cut(s)	180, 747, 807
BstENI	CCTNNNNNAGG	1 cut(s)	574
BstF5I	GGATG	4 cut(s)	784, 834, 901, 967
BstKTI	GATC	6 cut(s)	34, 463, 561, 711, 727, 889
BstMAI	GTCTC	1 cut(s)	996
BstMBI	GATC	6 cut(s)	31, 460, 558, 708, 724, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	2 cut(s)	571, 656
BstSCI	CCNGG	4 cut(s)	520, 521, 569, 654
BstSFI	CTRYAG	1 cut(s)	425
BstSLI	GKGCMC	2 cut(s)	24, 522
BstV1I	GCAGC	1 cut(s)	611
BstV2I	GAAGAC	2 cut(s)	673, 746
BstX2I	RGATCY	3 cut(s)	558, 708, 724
BstYI	RGATCY	3 cut(s)	558, 708, 724
BsuRI	GGCC	1 cut(s)	617
BtsCI	GGATG	4 cut(s)	784, 834, 901, 967
BtsI	GCAGTG	2 cut(s)	120, 940
BtsIMutI	CAGTG	5 cut(s)	41, 102, 120, 367, 940
BveI	ACCTGC	2 cut(s)	5, 49
Cac8I	GCNNGC	2 cut(s)	138, 853
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	445
Cfr9I	CCCGGG	1 cut(s)	521
CsiI	ACCWGGT	1 cut(s)	654
CviAII	CATG	1 cut(s)	1007
DdeI	CTNAG	3 cut(s)	180, 747, 807
DpnI	GATC	6 cut(s)	33, 462, 560, 710, 726, 888
DpnII	GATC	6 cut(s)	31, 460, 558, 708, 724, 886
DraI	TTTAAA	1 cut(s)	166
Eam1104I	CTCTTC	2 cut(s)	780, 886
EarI	CTCTTC	2 cut(s)	780, 886
Eco130I	CCWWGG	1 cut(s)	612
Eco31I	GGTCTC	1 cut(s)	996
Eco47I	GGWCC	1 cut(s)	445
Eco57I	CTGAAG	2 cut(s)	78, 911
Eco88I	CYCGRG	1 cut(s)	521
EcoNI	CCTNNNNNAGG	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	569, 654
EcoT14I	CCWWGG	1 cut(s)	612
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	1 cut(s)	1010
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	538
FatI	CATG	1 cut(s)	1006
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	625
FokI	GGATG	4 cut(s)	791, 841, 908, 974
Fsp4HI	GCNGC	1 cut(s)	625
GluI	GCNGC	1 cut(s)	625
GsaI	CCCAGC	1 cut(s)	452
GsuI	CTGGAG	3 cut(s)	147, 827, 918
HaeIII	GGCC	1 cut(s)	617
HapII	CCGG	2 cut(s)	137, 522
Hin1II	CATG	1 cut(s)	1010
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	5 cut(s)	80, 103, 245, 365, 742
HpaII	CCGG	2 cut(s)	137, 522
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	3 cut(s)	22, 54, 800
Hpy188I	TCNGA	7 cut(s)	31, 108, 181, 370, 729, 886, 891
Hpy188III	TCNNGA	3 cut(s)	325, 844, 935
Hpy8I	GTNNAC	3 cut(s)	22, 54, 800
Hpy99I	CGWCG	1 cut(s)	977
HpyAV	CCTTC	5 cut(s)	322, 656, 805, 856, 886
HpyCH4III	ACNGT	3 cut(s)	289, 401, 631
HpyCH4V	TGCA	8 cut(s)	14, 22, 274, 476, 627, 872, 911, 945
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	3 cut(s)	180, 747, 807
Hsp92II	CATG	1 cut(s)	1010
KroI	GCCGGC	1 cut(s)	136
KroNI	GCCGGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	31, 460, 558, 708, 724, 886
LguI	GCTCTTC	1 cut(s)	780
LmnI	GCTCC	1 cut(s)	937
Lsp1109I	GCAGC	1 cut(s)	611
LweI	GCATC	2 cut(s)	386, 952
MabI	ACCWGGT	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	118, 148
MalI	GATC	6 cut(s)	33, 462, 560, 710, 726, 888
MboI	GATC	6 cut(s)	31, 460, 558, 708, 724, 886
MboII	GAAGA	5 cut(s)	112, 678, 751, 797, 873
MfeI	CAATTG	1 cut(s)	713
MflI	RGATCY	3 cut(s)	558, 708, 724
MhlI	GDGCHC	2 cut(s)	24, 522
MluCI	AATT	9 cut(s)	86, 234, 268, 543, 713, 758, 832, 986, 1039
MlyI	GAGTC	1 cut(s)	736
MnlI	CCTC	9 cut(s)	175, 178, 446, 570, 572, 611, 681, 756, 895
Mph1103I	ATGCAT	1 cut(s)	913
MroNI	GCCGGC	1 cut(s)	136
MspCI	CTTAAG	3 cut(s)	202, 254, 734
MspI	CCGG	2 cut(s)	137, 522
MspR9I	CCNGG	4 cut(s)	522, 523, 571, 656
MunI	CAATTG	1 cut(s)	713
MvaI	CCWGG	2 cut(s)	571, 656
MwoI	GCNNNNNNNGC	1 cut(s)	64
NaeI	GCCGGC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	522, 523
NdeII	GATC	6 cut(s)	31, 460, 558, 708, 724, 886
NgoMIV	GCCGGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	1010
NlaIV	GGNNCC	2 cut(s)	447, 560
NmuCI	GTSAC	2 cut(s)	118, 148
NsiI	ATGCAT	1 cut(s)	913
PaqCI	CACCTGC	1 cut(s)	5
PasI	CCCWGGG	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	780
PdiI	GCCGGC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	80, 103, 245, 365
PflMI	CCANNNNNTGG	1 cut(s)	718
PkrI	GCNGC	1 cut(s)	626
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
PsiI	TTATAA	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	569, 654
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	2 cut(s)	569, 654
PspN4I	GGNNCC	2 cut(s)	447, 560
PspPI	GGNCC	1 cut(s)	445
PsuI	RGATCY	3 cut(s)	558, 708, 724
SapI	GCTCTTC	1 cut(s)	780
SatI	GCNGC	1 cut(s)	625
Sau3AI	GATC	6 cut(s)	31, 460, 558, 708, 724, 886
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	4 cut(s)	522, 523, 571, 656
SduI	GDGCHC	2 cut(s)	24, 522
SexAI	ACCWGGT	1 cut(s)	654
SfaNI	GCATC	2 cut(s)	386, 952
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	445
SmaI	CCCGGG	1 cut(s)	523
SmlI	CTYRAG	4 cut(s)	202, 223, 254, 734
SmoI	CTYRAG	4 cut(s)	202, 223, 254, 734
Sse9I	AATT	9 cut(s)	86, 234, 268, 543, 713, 758, 832, 986, 1039
SspI	AATATT	1 cut(s)	640
StyD4I	CCNGG	4 cut(s)	520, 521, 569, 654
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	3 cut(s)	289, 401, 631
TaqI	TCGA	1 cut(s)	5
TasI	AATT	9 cut(s)	86, 234, 268, 543, 713, 758, 832, 986, 1039
TfiI	GAWTC	4 cut(s)	80, 103, 245, 365
TscAI	CASTG	5 cut(s)	41, 102, 127, 367, 947
TseFI	GTSAC	2 cut(s)	118, 148
TseI	GCWGC	1 cut(s)	624
Tsp45I	GTSAC	2 cut(s)	118, 148
TspDTI	ATGAA	4 cut(s)	246, 549, 597, 845
TspGWI	ACGGA	1 cut(s)	571
TspMI	CCCGGG	1 cut(s)	521
TspRI	CASTG	5 cut(s)	41, 102, 127, 367, 947
Van91I	CCANNNNNTGG	1 cut(s)	718
Vha464I	CTTAAG	3 cut(s)	202, 254, 734
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	445
XagI	CCTNNNNNAGG	1 cut(s)	574
XapI	RAATTY	3 cut(s)	86, 268, 832
XmaI	CCCGGG	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.