Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003512

Physical Location & Seq

Genomic Coordinates Forward (+)

19515071 .. 19516330

Gene Structure 1260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0197000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGACGGACAAGGGTTTTCCACACCAACAAAGGATGTTGCAAGTAGTGTTGGGGGGGAAAACGTGAGGATCAAATCAAATTCAAAACTATGGGAATTTAATGCAGCTGTGAAGTACATTTCGGTTGAAAAAATGGATGCTGTGCGGGCCATAGGCCTAGGGTATACTTTACACCTAGGATGCACTGAGTTGGTACAACCGATCATTGAAGCGACTGTTAAATATGTTGATCCGTTGAATTACAAGATTTTGATTCACGGGATCGTATGCTACATAAATGGGGATGAATTTGGACGTGTAATGGGCATACACGATGGTGGAGAACCAATTGTTTTGGGGAATGGCAAAGGAGGAGAGGAGTATGGAACTGCGGTTGGGCCAATGTGTGATGGGGAAGGAAGAATCACAGTTGAACAGTTGATTCACATAGTCAGTAAACGAAGAGAGGTGGATGACACTTTCAAGATAGCTTTTGCAATGTTGGCACTGACTTGTGTGATTTGCCCGGGAATAGACGATGCGGTAGATGTGGGAATGTTGCTGCCACTGCTGGATACAACACGAATAGTTCGTAAAAATTGGGCCTCATTTGCCGTTAATCGGTTAATGGAGGGTGTGAAACGGCACAGGGAGGAAGGGACACCGGTGGTGGGGGGATGTATTATATTTCTTCAACTTCTATACCTTGACAAGGTGGGGGAGGTTCTTACACCAGATAGGGACCGCCTGTGCACACCTATTATGTATTGGGACAAAAATAAAGTCGATGCAATTGTTAAGAAGATAAAATTGACAGGAGGCCACAAAAGTCCTACTGTCATGCTAGAGAAGAGTAAGAGGACGAAGAGATTACAAGAAGCAGGGCATGAATGCGGGGTTTCGAGATTTGGGCTGAAGCAAGACGTCCACGAGACCATGATGGACTTGCAGTTGGACGTGAAATCAATGAAGGATCGCATGTGGGAAATGAAATGGGAAGTAACTTCAATGCAACCCAAATTCGTGCAGGTTACAGAGGGGGTAGAAATGGTTGTTGCTGAAGTTAGAGAAACGCTGTCACAAGTAAAGCGGGAATGTCAGACAATGTGTAAGCAACAATTACGGTTGGAAAGGAACCACAAGGAAAACTTAGAGATCATGGACAATGCAGTGAAGGGCATGCGAAGATATGACGCGACAAAACAGCAGCATTCAACATTCATAGTCCCCACCCATGACTACATTGCTGCAGTTCAGAAGGGAAATCAAAAGGTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0007623 GO:0008092 GO:0008150 GO:0009987 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0032432 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048511 GO:0051015 GO:0051017 GO:0051639 GO:0051764 GO:0061572 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

419

Amino Acids

47.08

Weight (kDa)

7.96

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT5G55400 AT5G55400 AT5G55400
fragaria_vesca	FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730
malus_domestica	MD03G1190800.v1.1 MD04G1101600.v1.1 MD11G1207500.v1.1
prunus_persica	Prupe.4G227900_v2.0.a1
pyrus_communis	pycom03g14400 pycom03g14410 pycom11g18070
rosa_chinensis	RchiOBHm_Chr5g0041891
rosa_laevigata	RLG00000034102 RLG00000034103
rosa_multiflora	Rmu_sc0009443.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038650
rosa_rugosa	Rorug05G0196900 Rorug05G0197000
rosa_samantha	Rh5AG281500 Rh5BG287100 Rh5CG318700 Rh5DG295800
rosa_wichuraiana	Rw0G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	906
Acc36I	ACCTGC	1 cut(s)	997
AccI	GTMKAC	1 cut(s)	164
AccII	CGCG	1 cut(s)	1175
AciI	CCGC	6 cut(s)	145, 371, 521, 724, 873, 1069
AclWI	GGATC	4 cut(s)	77, 224, 269, 960
AcsI	RAATTY	4 cut(s)	79, 95, 287, 998
AcuI	CTGAAG	2 cut(s)	914, 1059
AcyI	GRCGYC	1 cut(s)	903
AfaI	GTAC	2 cut(s)	116, 195
AfiI	CCNNNNNNNGG	3 cut(s)	600, 650, 691
AflIII	ACRYGT	1 cut(s)	295
AgeI	ACCGGT	1 cut(s)	643
AgsI	TTSAA	9 cut(s)	84, 128, 209, 238, 413, 463, 674, 987, 1194
AjiI	CACGTC	2 cut(s)	296, 937
AleI	CACNNNNGTG	1 cut(s)	315
AluBI	AGCT	2 cut(s)	107, 470
AluI	AGCT	2 cut(s)	107, 470
Alw21I	GWGCWC	1 cut(s)	734
Alw26I	GTCTC	1 cut(s)	905
Alw44I	GTGCAC	1 cut(s)	730
AlwI	GGATC	4 cut(s)	77, 224, 269, 960
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	5 cut(s)	147, 154, 377, 582, 799
ApaLI	GTGCAC	1 cut(s)	730
ApeKI	GCWGC	4 cut(s)	104, 541, 1186, 1226
ApoI	RAATTY	4 cut(s)	79, 95, 287, 998
ArsI	GACNNNNNNTTYG	2 cut(s)	747, 779
AsiGI	ACCGGT	1 cut(s)	643
AspA2I	CCTAGG	2 cut(s)	157, 175
AspS9I	GGNCC	4 cut(s)	147, 377, 582, 721
AsuC2I	CCSGG	2 cut(s)	506, 507
AvaI	CYCGRG	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	721
AvrII	CCTAGG	2 cut(s)	157, 175
BaeGI	GKGCMC	1 cut(s)	734
BauI	CACGAG	1 cut(s)	908
Bbv12I	GWGCWC	1 cut(s)	734
BbvI	GCAGC	4 cut(s)	116, 528, 1198, 1213
BccI	CCATC	3 cut(s)	308, 383, 913
BceAI	ACGGC	2 cut(s)	578, 638
BciVI	GTATCC	1 cut(s)	547
BcnI	CCSGG	2 cut(s)	506, 507
BcoDI	GTCTC	1 cut(s)	905
BfaI	CTAG	3 cut(s)	158, 176, 824
BfmI	CTRYAG	1 cut(s)	1227
BfuAI	ACCTGC	1 cut(s)	997
BfuI	GTATCC	1 cut(s)	547
BisI	GCNGC	4 cut(s)	105, 542, 1187, 1227
BlnI	CCTAGG	2 cut(s)	157, 175
BlsI	GCNGC	4 cut(s)	106, 543, 1188, 1228
Bme1390I	CCNGG	2 cut(s)	506, 507
Bme18I	GGWCC	1 cut(s)	721
BmeT110I	CYCGRG	1 cut(s)	505
BmgBI	CACGTC	2 cut(s)	296, 937
BmgT120I	GGNCC	4 cut(s)	147, 377, 582, 721
BmiI	GGNNCC	2 cut(s)	722, 1115
BmrFI	CCNGG	2 cut(s)	506, 507
BmsI	GCATC	4 cut(s)	127, 170, 508, 757
BpuMI	CCSGG	2 cut(s)	506, 507
BsaHI	GRCGYC	1 cut(s)	903
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	3 cut(s)	157, 175, 505
BsaWI	WCCGGW	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	3 cut(s)	600, 650, 691
Bse118I	RCCGGY	1 cut(s)	643
Bse3DI	GCAATG	2 cut(s)	483, 1221
BseDI	CCNNGG	3 cut(s)	157, 175, 505
BseGI	GGATG	6 cut(s)	40, 142, 185, 289, 457, 662
BseLI	CCNNNNNNNGG	3 cut(s)	600, 650, 691
BseMI	GCAATG	2 cut(s)	483, 1221
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	366, 371
BseSI	GKGCMC	1 cut(s)	734
BseXI	GCAGC	4 cut(s)	116, 528, 1198, 1213
BsgI	GTGCAG	1 cut(s)	1025
Bsh1236I	CGCG	1 cut(s)	1175
BshFI	GGCC	5 cut(s)	149, 156, 379, 584, 801
BshTI	ACCGGT	1 cut(s)	643
BsiHKAI	GWGCWC	1 cut(s)	734
BsiHKCI	CYCGRG	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	506, 644
BslFI	GGGAC	4 cut(s)	652, 734, 764, 1190
BslI	CCNNNNNNNGG	3 cut(s)	600, 650, 691
BsmAI	GTCTC	1 cut(s)	905
BsmFI	GGGAC	4 cut(s)	652, 734, 764, 1190
BsmI	GAATGC	2 cut(s)	875, 1189
BsnI	GGCC	5 cut(s)	149, 156, 379, 584, 801
Bso31I	GGTCTC	1 cut(s)	905
BsoBI	CYCGRG	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	734
Bsp143I	GATC	6 cut(s)	69, 201, 229, 261, 952, 1134
BspACI	CCGC	6 cut(s)	145, 371, 521, 724, 873, 1069
BspANI	GGCC	5 cut(s)	149, 156, 379, 584, 801
BspCNI	CTCAG	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	1175
BspLI	GGNNCC	2 cut(s)	722, 1115
BspMAI	CTGCAG	1 cut(s)	1231
BspMI	ACCTGC	1 cut(s)	997
BspPI	GGATC	4 cut(s)	77, 224, 269, 960
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	2 cut(s)	483, 1221
BsrFI	RCCGGY	1 cut(s)	643
BssAI	RCCGGY	1 cut(s)	643
BssECI	CCNNGG	3 cut(s)	157, 175, 505
BssMI	GATC	6 cut(s)	69, 201, 229, 261, 952, 1134
BssNAI	GTATAC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	903
BssSI	CACGAG	1 cut(s)	908
BssT1I	CCWWGG	2 cut(s)	157, 175
Bst1107I	GTATAC	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	908
Bst4CI	ACNGT	5 cut(s)	217, 409, 417, 817, 1104
Bst6I	CTCTTC	3 cut(s)	436, 824, 839
BstACI	GRCGYC	1 cut(s)	903
BstC8I	GCNNGC	2 cut(s)	147, 1160
BstDEI	CTNAG	2 cut(s)	186, 1129
BstENI	CCTNNNNNAGG	1 cut(s)	689
BstF5I	GGATG	6 cut(s)	40, 142, 185, 289, 457, 662
BstFNI	CGCG	1 cut(s)	1175
BstKTI	GATC	6 cut(s)	72, 204, 232, 264, 955, 1137
BstMAI	GTCTC	1 cut(s)	905
BstMBI	GATC	6 cut(s)	69, 201, 229, 261, 952, 1134
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 482, 547, 590
BstNSI	RCATGY	2 cut(s)	961, 1162
BstSCI	CCNGG	2 cut(s)	504, 505
BstSFI	CTRYAG	1 cut(s)	1227
BstSLI	GKGCMC	1 cut(s)	734
BstUI	CGCG	1 cut(s)	1175
BstV1I	GCAGC	4 cut(s)	116, 528, 1198, 1213
BstZ17I	GTATAC	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	5 cut(s)	149, 156, 379, 584, 801
BtrI	CACGTC	2 cut(s)	296, 937
BtsCI	GGATG	6 cut(s)	40, 142, 185, 289, 457, 662
BtsI	GCAGTG	2 cut(s)	545, 1155
BtsIMutI	CAGTG	4 cut(s)	183, 485, 545, 1155
BveI	ACCTGC	1 cut(s)	997
Cac8I	GCNNGC	2 cut(s)	147, 1160
Cfr10I	RCCGGY	1 cut(s)	643
Cfr13I	GGNCC	4 cut(s)	147, 377, 582, 721
Cfr9I	CCCGGG	1 cut(s)	505
CseI	GACGC	1 cut(s)	1181
Csp6I	GTAC	2 cut(s)	115, 194
CspAI	ACCGGT	1 cut(s)	643
CviAII	CATG	7 cut(s)	820, 866, 916, 958, 1138, 1159, 1214
CviJI	RGCY	8 cut(s)	107, 149, 156, 379, 470, 584, 801, 892
CviKI_1	RGCY	8 cut(s)	107, 149, 156, 379, 470, 584, 801, 892
CviQI	GTAC	2 cut(s)	115, 194
DdeI	CTNAG	2 cut(s)	186, 1129
DpnI	GATC	6 cut(s)	71, 203, 231, 263, 954, 1136
DpnII	GATC	6 cut(s)	69, 201, 229, 261, 952, 1134
Eam1104I	CTCTTC	3 cut(s)	436, 824, 839
EarI	CTCTTC	3 cut(s)	436, 824, 839
Eco130I	CCWWGG	2 cut(s)	157, 175
Eco147I	AGGCCT	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	905
Eco47I	GGWCC	1 cut(s)	721
Eco57I	CTGAAG	2 cut(s)	914, 1059
Eco88I	CYCGRG	1 cut(s)	505
EcoNI	CCTNNNNNAGG	1 cut(s)	689
EcoT14I	CCWWGG	2 cut(s)	157, 175
ErhI	CCWWGG	2 cut(s)	157, 175
FaeI	CATG	7 cut(s)	823, 869, 919, 961, 1141, 1162, 1217
FalI	AAGNNNNNCTT	2 cut(s)	1112, 1144
FaqI	GGGAC	4 cut(s)	652, 734, 764, 1190
FatI	CATG	7 cut(s)	819, 865, 915, 957, 1137, 1158, 1213
FauI	CCCGC	3 cut(s)	138, 866, 1062
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	4 cut(s)	105, 542, 1187, 1227
FokI	GGATG	6 cut(s)	47, 149, 192, 296, 464, 669
Fsp4HI	GCNGC	4 cut(s)	105, 542, 1187, 1227
FspBI	CTAG	3 cut(s)	158, 176, 824
GluI	GCNGC	4 cut(s)	105, 542, 1187, 1227
HaeIII	GGCC	5 cut(s)	149, 156, 379, 584, 801
HapII	CCGG	2 cut(s)	506, 644
HgaI	GACGC	1 cut(s)	1181
Hin1I	GRCGYC	1 cut(s)	903
Hin1II	CATG	7 cut(s)	823, 869, 919, 961, 1141, 1162, 1217
HinfI	GANTC	3 cut(s)	253, 402, 421
HpaII	CCGG	2 cut(s)	506, 644
Hpy166II	GTNNAC	4 cut(s)	165, 437, 732, 907
Hpy188I	TCNGA	2 cut(s)	1080, 1236
Hpy188III	TCNNGA	2 cut(s)	463, 882
Hpy8I	GTNNAC	4 cut(s)	165, 437, 732, 907
HpyAV	CCTTC	5 cut(s)	389, 629, 943, 1147, 1231
HpyCH4III	ACNGT	5 cut(s)	217, 409, 417, 817, 1104
HpyCH4IV	ACGT	4 cut(s)	63, 295, 903, 936
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 482, 547, 590
HpyF3I	CTNAG	2 cut(s)	186, 1129
HpySE526I	ACGT	4 cut(s)	63, 295, 903, 936
Hsp92I	GRCGYC	1 cut(s)	903
Hsp92II	CATG	7 cut(s)	823, 869, 919, 961, 1141, 1162, 1217
Kzo9I	GATC	6 cut(s)	69, 201, 229, 261, 952, 1134
LpnPI	CCDG	9 cut(s)	519, 536, 613, 657, 726, 740, 780, 846, 992
Lsp1109I	GCAGC	4 cut(s)	116, 528, 1198, 1213
LweI	GCATC	4 cut(s)	127, 170, 508, 757
MaeI	CTAG	3 cut(s)	158, 176, 824
MaeII	ACGT	4 cut(s)	63, 295, 903, 936
MaeIII	GTNAC	3 cut(s)	979, 1009, 1056
MalI	GATC	6 cut(s)	71, 203, 231, 263, 954, 1136
MboI	GATC	6 cut(s)	69, 201, 229, 261, 952, 1134
MboII	GAAGA	7 cut(s)	411, 453, 662, 793, 841, 856, 1176
MfeI	CAATTG	2 cut(s)	327, 771
MhlI	GDGCHC	1 cut(s)	734
MmeI	TCCRAC	2 cut(s)	912, 1086
MseI	TTAA	5 cut(s)	99, 219, 597, 605, 777
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	506, 644
MspR9I	CCNGG	2 cut(s)	506, 507
MunI	CAATTG	2 cut(s)	327, 771
Mva1269I	GAATGC	2 cut(s)	875, 1189
MvnI	CGCG	1 cut(s)	1175
MwoI	GCNNNNNNNGC	4 cut(s)	146, 482, 547, 590
NciI	CCSGG	2 cut(s)	506, 507
NdeII	GATC	6 cut(s)	69, 201, 229, 261, 952, 1134
NlaIII	CATG	7 cut(s)	823, 869, 919, 961, 1141, 1162, 1217
NlaIV	GGNNCC	2 cut(s)	722, 1115
NmuCI	GTSAC	1 cut(s)	1056
NspI	RCATGY	2 cut(s)	961, 1162
OliI	CACNNNNGTG	1 cut(s)	315
PaeI	GCATGC	1 cut(s)	1162
PceI	AGGCCT	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PctI	GAATGC	2 cut(s)	875, 1189
PfeI	GAWTC	3 cut(s)	253, 402, 421
PinAI	ACCGGT	1 cut(s)	643
PkrI	GCNGC	4 cut(s)	106, 543, 1188, 1228
PspN4I	GGNNCC	2 cut(s)	722, 1115
PspPI	GGNCC	4 cut(s)	147, 377, 582, 721
PstI	CTGCAG	1 cut(s)	1231
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	2 cut(s)	116, 195
RsaNI	GTAC	2 cut(s)	115, 194
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	5 cut(s)	99, 219, 597, 605, 777
SatI	GCNGC	4 cut(s)	105, 542, 1187, 1227
Sau3AI	GATC	6 cut(s)	69, 201, 229, 261, 952, 1134
Sau96I	GGNCC	4 cut(s)	147, 377, 582, 721
ScrFI	CCNGG	2 cut(s)	506, 507
SduI	GDGCHC	1 cut(s)	734
SfaNI	GCATC	4 cut(s)	127, 170, 508, 757
SfcI	CTRYAG	1 cut(s)	1227
SgrAI	CRCCGGYG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	721
SmaI	CCCGGG	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	315
SphI	GCATGC	1 cut(s)	1162
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	6 cut(s)	145, 371, 521, 724, 873, 1069
SspMI	CTAG	3 cut(s)	158, 176, 824
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	504, 505
StyI	CCWWGG	2 cut(s)	157, 175
TaaI	ACNGT	5 cut(s)	217, 409, 417, 817, 1104
TaiI	ACGT	4 cut(s)	66, 298, 906, 939
TaqI	TCGA	2 cut(s)	765, 881
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	3 cut(s)	253, 402, 421
Tru1I	TTAA	5 cut(s)	99, 219, 597, 605, 777
Tru9I	TTAA	5 cut(s)	99, 219, 597, 605, 777
TscAI	CASTG	4 cut(s)	190, 492, 552, 1155
TseFI	GTSAC	1 cut(s)	1056
TseI	GCWGC	4 cut(s)	104, 541, 1186, 1226
Tsp45I	GTSAC	1 cut(s)	1056
TspDTI	ATGAA	5 cut(s)	300, 882, 962, 983, 1189
TspGWI	ACGGA	2 cut(s)	21, 222
TspMI	CCCGGG	1 cut(s)	505
TspRI	CASTG	4 cut(s)	190, 492, 552, 1155
VneI	GTGCAC	1 cut(s)	730
VpaK11BI	GGWCC	1 cut(s)	721
XagI	CCTNNNNNAGG	1 cut(s)	689
XapI	RAATTY	4 cut(s)	79, 95, 287, 998
XceI	RCATGY	2 cut(s)	961, 1162
XmaI	CCCGGG	1 cut(s)	505
XmaJI	CCTAGG	2 cut(s)	157, 175
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	3 cut(s)	158, 176, 824
ZraI	GACGTC	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.