Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003512

Physical Location & Seq

Genomic Coordinates Reverse (-)

18798928 .. 18804846

Gene Structure 5919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1101600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCGTGCTGGTCATCCAGGAAGAGGAGACTGGATGCACACGTGTTGCTCATCTGGGCACAGAAGGAAGCTGGAAAAGTTGGGGGAACTGGGAGTTTCTCTCTCATTCCACTCTCTTCATTCGCTTCGAGAACAATTTTTCTCGAGCTCTCTCTCAAGCTCGGAACTCCTGGCAGTGAAGACTCAGAATGGGAAAGTTATGGCTGGAGATTTGCCACCTTTAATGGTGAGATTAAAGGCGTTTAGAGAAACGTATTCTGAGGCGGACATCAGAGGTATCTTAAGTGGGTTGGATTCTGACTTCGGTGATGAGATTCATCCTTCCTTAAGATGTTTCTTCATGTCAGCAGCTGCGGAGACTCTCGGCAACCGCAGGTTTAGCAAGGGCGAATCTGGCCGTTTTATAAGCCACGCTTCTGACAAACACACCAAGTCTCTGCAAGCCAGGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0005884 GO:0006996 GO:0007010 GO:0007015 GO:0007623 GO:0008092 GO:0008150 GO:0009987 GO:0015629 GO:0016043 GO:0022607 GO:0030029 GO:0030036 GO:0032432 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048511 GO:0051015 GO:0051017 GO:0051639 GO:0051764 GO:0061572 GO:0071840 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

151

Amino Acids

16.65

Weight (kDa)

9.37

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT4G26700 AT5G55400 AT5G55400 AT5G55400
fragaria_vesca	FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730 FvH4_3g23730
malus_domestica	MD03G1190800.v1.1 MD04G1101600.v1.1 MD11G1207500.v1.1
prunus_persica	Prupe.4G227900_v2.0.a1
pyrus_communis	pycom03g14400 pycom03g14410 pycom11g18070
rosa_chinensis	RchiOBHm_Chr5g0041891
rosa_laevigata	RLG00000034102 RLG00000034103
rosa_multiflora	Rmu_sc0009443.1_g000014
rosa_roxburghii	Rroxscaffold_1G00038650
rosa_rugosa	Rorug05G0196900 Rorug05G0197000
rosa_samantha	Rh5AG281500 Rh5BG287100 Rh5CG318700 Rh5DG295800
rosa_wichuraiana	Rw0G001340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	363
AciI	CCGC	3 cut(s)	263, 353, 370
AcoI	YGGCCR	1 cut(s)	394
AcvI	CACGTG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflII	CTTAAG	2 cut(s)	280, 325
AflIII	ACRYGT	2 cut(s)	39, 41
AjnI	CCWGG	3 cut(s)	16, 168, 443
AluBI	AGCT	4 cut(s)	70, 147, 159, 350
AluI	AGCT	4 cut(s)	70, 147, 159, 350
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	3 cut(s)	21, 350, 438
AlwNI	CAGNNNCTG	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	142
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	347, 350
AsuHPI	GGTGA	2 cut(s)	238, 317
AvaI	CYCGRG	1 cut(s)	142
BaeGI	GKGCMC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	149
BbrPI	CACGTG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	2 cut(s)	337, 359
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	3 cut(s)	18, 170, 445
BcoDI	GTCTC	3 cut(s)	21, 350, 438
BfrI	CTTAAG	2 cut(s)	280, 325
BfuAI	ACCTGC	1 cut(s)	363
BisI	GCNGC	2 cut(s)	348, 351
BlsI	GCNGC	2 cut(s)	349, 352
Bme1390I	CCNGG	3 cut(s)	18, 170, 445
BmeT110I	CYCGRG	1 cut(s)	142
BmrFI	CCNGG	3 cut(s)	18, 170, 445
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
BpmI	CTGGAG	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	139
BsaAI	YACGTR	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	35, 93
BseBI	CCWGG	3 cut(s)	18, 170, 445
BseGI	GGATG	3 cut(s)	13, 39, 316
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	2 cut(s)	197, 249
BseNI	ACTGG	2 cut(s)	35, 93
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	337, 359
BshFI	GGCC	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	3 cut(s)	21, 350, 438
BsnI	GGCC	1 cut(s)	396
BsoBI	CYCGRG	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	60, 149
BspACI	CCGC	3 cut(s)	263, 353, 370
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	2 cut(s)	196, 250
BspMI	ACCTGC	1 cut(s)	363
BspTI	CTTAAG	2 cut(s)	280, 325
BsrI	ACTGG	2 cut(s)	35, 93
Bst2UI	CCWGG	3 cut(s)	18, 170, 445
Bst6I	CTCTTC	2 cut(s)	16, 120
BstAFI	CTTAAG	2 cut(s)	280, 325
BstBAI	YACGTR	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	6, 441
BstDEI	CTNAG	2 cut(s)	183, 258
BstF5I	GGATG	3 cut(s)	13, 39, 316
BstMAI	GTCTC	3 cut(s)	21, 350, 438
BstMWI	GCNNNNNNNGC	2 cut(s)	378, 393
BstNI	CCWGG	3 cut(s)	18, 170, 445
BstSCI	CCNGG	3 cut(s)	16, 168, 443
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	337, 359
BstV2I	GAAGAC	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	3 cut(s)	13, 39, 316
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	6, 441
CaiI	CAGNNNCTG	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	8 cut(s)	70, 147, 159, 203, 350, 396, 408, 443
CviKI_1	RGCY	8 cut(s)	70, 147, 159, 203, 350, 396, 408, 443
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	2 cut(s)	183, 258
EaeI	YGGCCR	1 cut(s)	394
Eam1104I	CTCTTC	2 cut(s)	16, 120
EarI	CTCTTC	2 cut(s)	16, 120
EciI	GGCGGA	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	147
Eco72I	CACGTG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	147
EcoRII	CCWGG	3 cut(s)	16, 168, 443
EcoT38I	GRGCYC	1 cut(s)	149
FaeI	CATG	1 cut(s)	343
FaiI	YATR	3 cut(s)	200, 341, 404
FalI	AAGNNNNNCTT	2 cut(s)	397, 429
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	348, 351
FokI	GGATG	2 cut(s)	46, 303
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	2 cut(s)	348, 351
GluI	GCNGC	2 cut(s)	348, 351
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	343
HinfI	GANTC	5 cut(s)	181, 293, 313, 358, 389
HphI	GGTGA	2 cut(s)	238, 317
Hpy188I	TCNGA	6 cut(s)	163, 186, 259, 272, 298, 418
Hpy188III	TCNNGA	2 cut(s)	128, 142
HpyAV	CCTTC	2 cut(s)	57, 330
HpyCH4IV	ACGT	2 cut(s)	41, 251
HpyCH4V	TGCA	2 cut(s)	37, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	378, 393
HpyF3I	CTNAG	2 cut(s)	183, 258
HpySE526I	ACGT	2 cut(s)	41, 251
Hsp92II	CATG	1 cut(s)	343
Lsp1109I	GCAGC	2 cut(s)	337, 359
LweI	GCATC	1 cut(s)	24
MaeII	ACGT	2 cut(s)	41, 251
MboII	GAAGA	4 cut(s)	33, 107, 190, 328
MhlI	GDGCHC	2 cut(s)	60, 149
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	2 cut(s)	175, 352
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	3 cut(s)	17, 253, 266
MseI	TTAA	4 cut(s)	221, 233, 281, 326
MspA1I	CMGCKG	1 cut(s)	350
MspCI	CTTAAG	2 cut(s)	280, 325
MspR9I	CCNGG	3 cut(s)	18, 170, 445
MvaI	CCWGG	3 cut(s)	18, 170, 445
MwoI	GCNNNNNNNGC	2 cut(s)	378, 393
NlaIII	CATG	1 cut(s)	343
NmeAIII	GCCGAG	1 cut(s)	342
PaeR7I	CTCGAG	1 cut(s)	142
PfeI	GAWTC	3 cut(s)	293, 313, 389
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	349, 352
PleI	GAGTC	2 cut(s)	175, 352
PmaCI	CACGTG	1 cut(s)	42
PmlI	CACGTG	1 cut(s)	42
PpsI	GAGTC	2 cut(s)	175, 352
Ppu21I	YACGTR	1 cut(s)	42
PsiI	TTATAA	1 cut(s)	404
Psp124BI	GAGCTC	1 cut(s)	149
Psp6I	CCWGG	3 cut(s)	16, 168, 443
PspCI	CACGTG	1 cut(s)	42
PspGI	CCWGG	3 cut(s)	16, 168, 443
PstNI	CAGNNNCTG	1 cut(s)	350
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SacI	GAGCTC	1 cut(s)	149
SaqAI	TTAA	4 cut(s)	221, 233, 281, 326
SatI	GCNGC	2 cut(s)	348, 351
SchI	GAGTC	2 cut(s)	175, 352
ScrFI	CCNGG	3 cut(s)	18, 170, 445
SduI	GDGCHC	2 cut(s)	60, 149
SfaNI	GCATC	1 cut(s)	24
Sfr274I	CTCGAG	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	142
SmlI	CTYRAG	4 cut(s)	142, 154, 280, 325
SmoI	CTYRAG	4 cut(s)	142, 154, 280, 325
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	3 cut(s)	263, 353, 370
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	3 cut(s)	16, 168, 443
TaiI	ACGT	2 cut(s)	44, 254
TaqI	TCGA	2 cut(s)	127, 143
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	293, 313, 389
Tru1I	TTAA	4 cut(s)	221, 233, 281, 326
Tru9I	TTAA	4 cut(s)	221, 233, 281, 326
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	2 cut(s)	347, 350
TspDTI	ATGAA	3 cut(s)	107, 305, 328
TspRI	CASTG	1 cut(s)	180
Vha464I	CTTAAG	2 cut(s)	280, 325
XhoI	CTCGAG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.