FvH4_3g24650

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014974
Physical Location & Seq
Forward (+)
17756279 .. 17757354
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24650.t1

Sequence Viewer

Length: 510 bp
ATGGCGGAAGAGCATAGATGCCAGGCGCAGAAGCTGTGCGTGAACAACTGCGGATTCTTCGGGAGCCCCACCACGCAAAACCTGTGCTCCAAGTGCTACCGTGATCTGCAGCACAAGGAACAGCAAGCCCTCTCTCTCAACCAAACCATCATCTCTGCTGCTGCGGCGGCGGCGACCTCCTCTTCGTCTTCGGCTTTCTTTCCTTCGTCACCGGTCTCCGTCGCGACGCAGCAGAGCGAGCGCGTGGTCGTCGACGCGAAGGTAGAGGAGGAAGAGAAGAAGGAGGAGGTGGCGGCGGTGCCCGCGGCGGCGAGTCAGGCGAACAGGTGCATGGCGTGCAAGCGGCGCGTGGGGCTGACGGGGTTTAAGTGCAGGTGCGGGATGACGTTCTGCGGGACGCACAGGTACCCGGAGCAGCACGCGTGCGGGTTCGACTTCAGGAGCATGGGGAGGGAGCAGATAGCCAAGGCCAATCCGGTCATCAGGGGCGAGAAGCTGCAGAGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

170

Amino Acids

18.48

Weight (kDa)

8.81

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 12 - 34 1e-12 A20-like zinc finger
zf-AN1 PF01428 111 - 145 4.8e-10 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27580 AT2G27580
fragaria_vesca FvH4_3g24650
malus_domestica MD03G1142300.v1.1 MD11G1162800.v1.1
prunus_persica Prupe.6G127400_v2.0.a1
pyrus_communis pycom03g09700
rosa_chinensis RchiOBHm_Chr5g0044211
rosa_laevigata RLG00000034253
rosa_multiflora Rmu_sc0000776.1_g000081 Rmu_sc0002731.1_g000003
rosa_roxburghii Rroxscaffold_1G00036830
rosa_rugosa Rorug05G0211700
rosa_samantha Rh5BG304100 Rh5DG312800
rosa_wichuraiana Rw5G027460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 363
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 2 cut(s) 298, 405
AccI GTMKAC 1 cut(s) 252
AccII CGCG 6 cut(s) 224, 243, 257, 305, 348, 422
AcuI CTGAAG 1 cut(s) 421
AfaI GTAC 1 cut(s) 407
AflIII ACRYGT 1 cut(s) 420
AgeI ACCGGT 1 cut(s) 211
AjnI CCWGG 1 cut(s) 21
AluBI AGCT 2 cut(s) 34, 496
AluI AGCT 2 cut(s) 34, 496
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 220
AlwNI CAGNNNCTG 1 cut(s) 34
AoxI GGCC 1 cut(s) 468
ApeKI GCWGC 6 cut(s) 109, 158, 161, 229, 415, 496
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AsiGI ACCGGT 1 cut(s) 211
Asp718I GGTACC 1 cut(s) 405
AspLEI GCGC 3 cut(s) 28, 243, 348
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 201
BaeGI GKGCMC 1 cut(s) 303
BanI GGYRCC 2 cut(s) 298, 405
BanII GRGCYC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 6 cut(s) 121, 145, 148, 241, 427, 483
BccI CCATC 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 1 cut(s) 220
BfmI CTRYAG 2 cut(s) 107, 497
BfuAI ACCTGC 1 cut(s) 363
Bme1390I CCNGG 2 cut(s) 23, 410
BmiI GGNNCC 3 cut(s) 65, 300, 407
BmrFI CCNGG 2 cut(s) 23, 410
BmsI GCATC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 303, 465
BsaWI WCCGGW 2 cut(s) 211, 475
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse118I RCCGGY 1 cut(s) 211
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 303, 465
BseGI GGATG 1 cut(s) 387
BseRI GAGGAG 3 cut(s) 169, 281, 299
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 6 cut(s) 121, 145, 148, 241, 427, 483
BsgI GTGCAG 1 cut(s) 391
Bsh1236I CGCG 6 cut(s) 224, 243, 257, 305, 348, 422
BshFI GGCC 1 cut(s) 470
BshNI GGYRCC 2 cut(s) 298, 405
BshTI ACCGGT 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 89
BsiSI CCGG 3 cut(s) 212, 410, 476
BslFI GGGAC 1 cut(s) 409
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 1 cut(s) 470
Bso31I GGTCTC 1 cut(s) 220
Bsp1286I GDGCHC 3 cut(s) 68, 89, 303
Bsp143I GATC 2 cut(s) 103, 504
Bsp68I TCGCGA 1 cut(s) 224
BspANI GGCC 1 cut(s) 470
BspFNI CGCG 6 cut(s) 224, 243, 257, 305, 348, 422
BspLI GGNNCC 3 cut(s) 65, 300, 407
BspMAI CTGCAG 2 cut(s) 111, 501
BspMI ACCTGC 1 cut(s) 363
BspQI GCTCTTC 1 cut(s) 3
BspT107I GGYRCC 2 cut(s) 298, 405
BspTNI GGTCTC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 2 cut(s) 303, 465
BssMI GATC 2 cut(s) 103, 504
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 3 cut(s) 3, 187, 267
BstAPI GCANNNNNTGC 1 cut(s) 336
BstC8I GCNNGC 7 cut(s) 126, 239, 303, 337, 341, 420, 424
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 387
BstFNI CGCG 6 cut(s) 224, 243, 257, 305, 348, 422
BstHHI GCGC 3 cut(s) 28, 243, 348
BstKTI GATC 2 cut(s) 106, 507
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 2 cut(s) 103, 504
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 2 cut(s) 21, 408
BstSFI CTRYAG 2 cut(s) 107, 497
BstSLI GKGCMC 1 cut(s) 303
BstUI CGCG 6 cut(s) 224, 243, 257, 305, 348, 422
BstV1I GCAGC 6 cut(s) 121, 145, 148, 241, 427, 483
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 504
BstYI RGATCY 1 cut(s) 504
BsuRI GGCC 1 cut(s) 470
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 387
BtuMI TCGCGA 1 cut(s) 224
BveI ACCTGC 1 cut(s) 363
Cac8I GCNNGC 7 cut(s) 126, 239, 303, 337, 341, 420, 424
CaiI CAGNNNCTG 1 cut(s) 34
CfoI GCGC 3 cut(s) 28, 243, 348
Cfr10I RCCGGY 1 cut(s) 211
Cfr42I CCGCGG 1 cut(s) 306
CseI GACGC 3 cut(s) 235, 263, 406
Csp6I GTAC 1 cut(s) 406
CspAI ACCGGT 1 cut(s) 211
CviAII CATG 2 cut(s) 331, 445
CviJI RGCY 8 cut(s) 34, 66, 128, 194, 355, 464, 470, 496
CviKI_1 RGCY 8 cut(s) 34, 66, 128, 194, 355, 464, 470, 496
CviQI GTAC 1 cut(s) 406
DpnI GATC 2 cut(s) 105, 506
DpnII GATC 2 cut(s) 103, 504
Eam1104I CTCTTC 3 cut(s) 3, 187, 267
EarI CTCTTC 3 cut(s) 3, 187, 267
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 421
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 2 cut(s) 334, 448
FaiI YATR 3 cut(s) 15, 332, 446
FaqI GGGAC 1 cut(s) 409
FatI CATG 2 cut(s) 330, 444
FauI CCCGC 4 cut(s) 310, 371, 386, 419
FblI GTMKAC 1 cut(s) 252
FokI GGATG 1 cut(s) 394
FriOI GRGCYC 1 cut(s) 68
GlaI GCGC 3 cut(s) 27, 242, 347
HaeIII GGCC 1 cut(s) 470
HapII CCGG 3 cut(s) 212, 410, 476
HgaI GACGC 3 cut(s) 235, 263, 406
HhaI GCGC 3 cut(s) 28, 243, 348
Hin1II CATG 2 cut(s) 334, 448
Hin6I GCGC 3 cut(s) 26, 241, 346
HinP1I GCGC 3 cut(s) 26, 241, 346
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 2 cut(s) 54, 313
HpaII CCGG 3 cut(s) 212, 410, 476
HphI GGTGA 1 cut(s) 201
Hpy166II GTNNAC 2 cut(s) 43, 253
Hpy188I TCNGA 1 cut(s) 509
Hpy188III TCNNGA 3 cut(s) 61, 223, 439
Hpy8I GTNNAC 2 cut(s) 43, 253
Hpy99I CGWCG 4 cut(s) 224, 229, 254, 257
HpyAV CCTTC 3 cut(s) 213, 253, 274
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 5 cut(s) 109, 330, 339, 372, 499
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 2 cut(s) 334, 448
HspAI GCGC 3 cut(s) 26, 241, 346
KpnI GGTACC 1 cut(s) 409
KspI CCGCGG 1 cut(s) 306
Kzo9I GATC 2 cut(s) 103, 504
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 5 cut(s) 63, 92, 412, 441, 454
Lsp1109I GCAGC 6 cut(s) 121, 145, 148, 241, 427, 483
LweI GCATC 1 cut(s) 8
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 207
MalI GATC 2 cut(s) 105, 506
MboI GATC 2 cut(s) 103, 504
MboII GAAGA 6 cut(s) 20, 49, 174, 180, 284, 289
MflI RGATCY 1 cut(s) 504
MhlI GDGCHC 3 cut(s) 68, 89, 303
MluI ACGCGT 1 cut(s) 420
MlyI GAGTC 1 cut(s) 322
MnlI CCTC 9 cut(s) 140, 187, 190, 259, 262, 277, 280, 444, 495
MseI TTAA 1 cut(s) 366
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 3 cut(s) 212, 410, 476
MspR9I CCNGG 2 cut(s) 23, 410
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 6 cut(s) 224, 243, 257, 305, 348, 422
NciI CCSGG 1 cut(s) 410
NdeII GATC 2 cut(s) 103, 504
NlaIII CATG 2 cut(s) 334, 448
NlaIV GGNNCC 3 cut(s) 65, 300, 407
NmuCI GTSAC 1 cut(s) 207
NruI TCGCGA 1 cut(s) 224
PaqCI CACCTGC 1 cut(s) 363
PciSI GCTCTTC 1 cut(s) 3
PfeI GAWTC 1 cut(s) 54
PinAI ACCGGT 1 cut(s) 211
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 3 cut(s) 65, 300, 407
PstI CTGCAG 2 cut(s) 111, 501
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 504
RruI TCGCGA 1 cut(s) 224
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SacII CCGCGG 1 cut(s) 306
SalI GTCGAC 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 1 cut(s) 366
Sau3AI GATC 2 cut(s) 103, 504
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 2 cut(s) 23, 410
SduI GDGCHC 3 cut(s) 68, 89, 303
SfaNI GCATC 1 cut(s) 8
SfcI CTRYAG 2 cut(s) 107, 497
Sfr303I CCGCGG 1 cut(s) 306
SgrBI CCGCGG 1 cut(s) 306
SgrDI CGTCGACG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 21, 408
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 389
TaqI TCGA 2 cut(s) 252, 432
TauI GCSGC 7 cut(s) 167, 170, 173, 296, 308, 311, 346
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 6 cut(s) 109, 158, 161, 229, 415, 496
Tsp45I GTSAC 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.