Prupe.6G127400_v2.0.a1

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014974
Physical Location & Seq
Forward (+)
9838577 .. 9840058
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G127400.1

Sequence Viewer

Length: 489 bp
ATGGCGGAAGAACATCGGTGCCAGGCTCCACAACTATGCGTCAACAACTGCGGCTTCTTTGGAAGCCCAACGACGCAGAACTTGTGTTCCAAATGCTACCGTGACTTGCAGCTCAAGGAACAACAGACGCTCGCTCTCAACCAAACCTTAATCTCATCCGCCTCTGCCTCCTCTTCCTCCCACTCGTTCTTGTCTCCGCTGATCTCTGCCTCGCCGTCGCACGACGCGCGGGTGGAGCGCGTGGTGGAAACGAAGGAGGAAGAGGAGAAGGAGCAGCACGCGCCGCCAGCGAGGCAGGCGAACAAGTGCATGACGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCAGGTGCGGGATGACGTTCTGTGGGACCCACCGGTACCCGGAGCAGCACGCGTGCGGGTTCGACTTCAGAGCGATGGGGAAGGAGCAGATCGCCAAGGCCAACCCGGTCGTCAAGGGCGAGAAGCTGCAGAGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

163

Amino Acids

18.06

Weight (kDa)

8.81

Isoelectric Point (pI)

57.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27580 AT2G27580
fragaria_vesca FvH4_3g24650
malus_domestica MD03G1142300.v1.1 MD11G1162800.v1.1
prunus_persica Prupe.6G127400_v2.0.a1
pyrus_communis pycom03g09700
rosa_chinensis RchiOBHm_Chr5g0044211
rosa_laevigata RLG00000034253
rosa_multiflora Rmu_sc0000776.1_g000081 Rmu_sc0002731.1_g000003
rosa_roxburghii Rroxscaffold_1G00036830
rosa_rugosa Rorug05G0211700
rosa_samantha Rh5BG304100 Rh5DG312800
rosa_wichuraiana Rw5G027460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 342
Acc65I GGTACC 1 cut(s) 384
AccB1I GGYRCC 2 cut(s) 18, 384
AccII CGCG 6 cut(s) 227, 229, 240, 281, 327, 401
AciI CCGC 9 cut(s) 5, 51, 159, 197, 229, 284, 322, 357, 405
AcuI CTGAAG 1 cut(s) 400
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 1 cut(s) 388
AflIII ACRYGT 1 cut(s) 399
AgeI ACCGGT 1 cut(s) 381
AgsI TTSAA 1 cut(s) 346
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 1 cut(s) 21
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 2 cut(s) 112, 475
AluI AGCT 2 cut(s) 112, 475
Alw26I GTCTC 1 cut(s) 198
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 4 cut(s) 109, 274, 394, 475
AsiGI ACCGGT 1 cut(s) 381
Asp718I GGTACC 1 cut(s) 384
AspLEI GCGC 4 cut(s) 229, 240, 283, 327
AspS9I GGNCC 1 cut(s) 375
AsuC2I CCSGG 2 cut(s) 389, 455
AvaII GGWCC 1 cut(s) 375
BanI GGYRCC 2 cut(s) 18, 384
BbvI GCAGC 4 cut(s) 121, 286, 406, 462
BccI CCATC 1 cut(s) 418
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 23
BcnI CCSGG 2 cut(s) 389, 455
BcoDI GTCTC 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 292
BisI GCNGC 7 cut(s) 52, 110, 275, 284, 323, 395, 476
BlsI GCNGC 7 cut(s) 53, 111, 276, 285, 324, 396, 477
Bme1390I CCNGG 3 cut(s) 23, 389, 455
Bme18I GGWCC 1 cut(s) 375
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 375
BmiI GGNNCC 5 cut(s) 20, 27, 376, 377, 386
BmrFI CCNGG 3 cut(s) 23, 389, 455
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 2 cut(s) 389, 455
BsaJI CCNNGG 1 cut(s) 444
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse118I RCCGGY 1 cut(s) 381
BseBI CCWGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 2 cut(s) 155, 366
BseLI CCNNNNNNNGG 1 cut(s) 388
BseRI GAGGAG 2 cut(s) 160, 278
BseXI GCAGC 4 cut(s) 121, 286, 406, 462
BsgI GTGCAG 2 cut(s) 337, 370
Bsh1236I CGCG 6 cut(s) 227, 229, 240, 281, 327, 401
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 2 cut(s) 18, 384
BshTI ACCGGT 1 cut(s) 381
BsiEI CGRYCG 1 cut(s) 459
BsiSI CCGG 3 cut(s) 382, 389, 455
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 1 cut(s) 449
Bsp143I GATC 3 cut(s) 201, 438, 483
BspACI CCGC 9 cut(s) 5, 51, 159, 197, 229, 284, 322, 357, 405
BspANI GGCC 1 cut(s) 449
BspFNI CGCG 6 cut(s) 227, 229, 240, 281, 327, 401
BspLI GGNNCC 5 cut(s) 20, 27, 376, 377, 386
BspMAI CTGCAG 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 342
BspT107I GGYRCC 2 cut(s) 18, 384
BsrFI RCCGGY 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 3 cut(s) 201, 438, 483
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 178, 255
BstAPI GCANNNNNTGC 1 cut(s) 315
BstC8I GCNNGC 7 cut(s) 132, 279, 288, 297, 320, 399, 403
BstF5I GGATG 2 cut(s) 155, 366
BstFNI CGCG 6 cut(s) 227, 229, 240, 281, 327, 401
BstHHI GCGC 4 cut(s) 229, 240, 283, 327
BstKTI GATC 3 cut(s) 204, 441, 486
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 201, 438, 483
BstMCI CGRYCG 1 cut(s) 459
BstMWI GCNNNNNNNGC 9 cut(s) 226, 235, 280, 283, 287, 292, 296, 315, 324
BstNI CCWGG 1 cut(s) 23
BstSCI CCNGG 3 cut(s) 21, 387, 453
BstSFI CTRYAG 1 cut(s) 476
BstUI CGCG 6 cut(s) 227, 229, 240, 281, 327, 401
BstV1I GCAGC 4 cut(s) 121, 286, 406, 462
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuRI GGCC 1 cut(s) 449
BtgZI GCGATG 1 cut(s) 437
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 2 cut(s) 155, 366
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 7 cut(s) 132, 279, 288, 297, 320, 399, 403
CfoI GCGC 4 cut(s) 229, 240, 283, 327
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 375
CseI GACGC 4 cut(s) 28, 82, 136, 233
Csp6I GTAC 1 cut(s) 385
CspAI ACCGGT 1 cut(s) 381
CviAII CATG 1 cut(s) 310
CviJI RGCY 6 cut(s) 26, 54, 66, 112, 449, 475
CviKI_1 RGCY 6 cut(s) 26, 54, 66, 112, 449, 475
CviQI GTAC 1 cut(s) 385
DpnI GATC 3 cut(s) 203, 440, 485
DpnII GATC 3 cut(s) 201, 438, 483
Eam1104I CTCTTC 2 cut(s) 178, 255
EarI CTCTTC 2 cut(s) 178, 255
EciI GGCGGA 2 cut(s) 20, 148
Eco130I CCWWGG 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 1 cut(s) 313
FaiI YATR 2 cut(s) 37, 311
FaqI GGGAC 1 cut(s) 388
FatI CATG 1 cut(s) 309
FauI CCCGC 3 cut(s) 222, 350, 398
Fnu4HI GCNGC 7 cut(s) 52, 110, 275, 284, 323, 395, 476
FokI GGATG 2 cut(s) 142, 373
Fsp4HI GCNGC 7 cut(s) 52, 110, 275, 284, 323, 395, 476
GlaI GCGC 4 cut(s) 228, 239, 282, 326
GluI GCNGC 7 cut(s) 52, 110, 275, 284, 323, 395, 476
HaeIII GGCC 1 cut(s) 449
HapII CCGG 3 cut(s) 382, 389, 455
HgaI GACGC 4 cut(s) 28, 82, 136, 233
HhaI GCGC 4 cut(s) 229, 240, 283, 327
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 4 cut(s) 227, 238, 281, 325
HinP1I GCGC 4 cut(s) 227, 238, 281, 325
HincII GTYRAC 2 cut(s) 43, 336
HindII GTYRAC 2 cut(s) 43, 336
HpaII CCGG 3 cut(s) 382, 389, 455
Hpy166II GTNNAC 2 cut(s) 43, 336
Hpy188I TCNGA 2 cut(s) 419, 488
Hpy8I GTNNAC 2 cut(s) 43, 336
Hpy99I CGWCG 3 cut(s) 76, 220, 227
HpyAV CCTTC 3 cut(s) 247, 262, 424
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 2 cut(s) 314, 365
HpyCH4V TGCA 5 cut(s) 109, 309, 318, 351, 478
HpyF10VI GCNNNNNNNGC 9 cut(s) 226, 235, 280, 283, 287, 292, 296, 315, 324
HpySE526I ACGT 2 cut(s) 314, 365
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 4 cut(s) 227, 238, 281, 325
KflI GGGWCCC 1 cut(s) 375
KpnI GGTACC 1 cut(s) 388
Kzo9I GATC 3 cut(s) 201, 438, 483
LmnI GCTCC 5 cut(s) 31, 235, 271, 391, 433
LpnPI CCDG 9 cut(s) 8, 35, 281, 300, 304, 337, 395, 402, 468
Lsp1109I GCAGC 4 cut(s) 121, 286, 406, 462
MaeII ACGT 2 cut(s) 314, 365
MaeIII GTNAC 1 cut(s) 101
MalI GATC 3 cut(s) 203, 440, 485
MboI GATC 3 cut(s) 201, 438, 483
MboII GAAGA 3 cut(s) 20, 165, 272
MflI RGATCY 1 cut(s) 483
MluI ACGCGT 1 cut(s) 399
MnlI CCTC 9 cut(s) 172, 178, 181, 187, 220, 250, 256, 285, 474
MseI TTAA 1 cut(s) 149
MslI CAYNNNNRTG 1 cut(s) 34
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 3 cut(s) 382, 389, 455
MspR9I CCNGG 3 cut(s) 23, 389, 455
MvaI CCWGG 1 cut(s) 23
MvnI CGCG 6 cut(s) 227, 229, 240, 281, 327, 401
MwoI GCNNNNNNNGC 9 cut(s) 226, 235, 280, 283, 287, 292, 296, 315, 324
NciI CCSGG 2 cut(s) 389, 455
NdeII GATC 3 cut(s) 201, 438, 483
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 5 cut(s) 20, 27, 376, 377, 386
NmuCI GTSAC 1 cut(s) 101
PaqCI CACCTGC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 465
PinAI ACCGGT 1 cut(s) 381
PkrI GCNGC 7 cut(s) 53, 111, 276, 285, 324, 396, 477
PpuMI RGGWCCY 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
PspN4I GGNNCC 5 cut(s) 20, 27, 376, 377, 386
PspPI GGNCC 1 cut(s) 375
PspPPI RGGWCCY 1 cut(s) 375
PstI CTGCAG 1 cut(s) 480
PsuI RGATCY 1 cut(s) 483
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 34
SaqAI TTAA 1 cut(s) 149
SatI GCNGC 7 cut(s) 52, 110, 275, 284, 323, 395, 476
Sau3AI GATC 3 cut(s) 201, 438, 483
Sau96I GGNCC 1 cut(s) 375
ScrFI CCNGG 3 cut(s) 23, 389, 455
SetI ASST 6 cut(s) 114, 149, 317, 356, 368, 477
SfcI CTRYAG 1 cut(s) 476
SinI GGWCC 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SsiI CCGC 9 cut(s) 5, 51, 159, 197, 229, 284, 322, 357, 405
StyD4I CCNGG 3 cut(s) 21, 387, 453
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 2 cut(s) 317, 368
TaqI TCGA 1 cut(s) 411
TauI GCSGC 3 cut(s) 54, 286, 325
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 4 cut(s) 109, 274, 394, 475
Tsp45I GTSAC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.