Rorug05G0211700

Zinc finger A20 and AN1 domain-containing stress-associated protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
21714263 .. 21715203
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0211700.1

Sequence Viewer

Length: 312 bp
ATGGCTGTTGTTAGAGCCTTCATGTCTAAGCTCATGCCTCGAGTACCCATACTGAACACCATGCAATGGAGAATTACTCCTGTTCGATGTGCTTCTGGACCCGTATTGCCAGGTCTTGGTACAGGAAGCGGTCCACAGATCAATCTCATACCTGAAGGTGATACTATTACAGATGAGGACGATCAGGAGCAGAAAGATGTCAACACCTCAAACAACATGTATATCAACGAAGATGAAATCGTGGAGGAGCCAATTCCAGCACAAGTCAATGATTATGGAAGCTCAGATGAGTCTCCGATTAGTAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.29

Weight (kDa)

4.08

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27580 AT2G27580
fragaria_vesca FvH4_3g24650
malus_domestica MD03G1142300.v1.1 MD11G1162800.v1.1
prunus_persica Prupe.6G127400_v2.0.a1
pyrus_communis pycom03g09700
rosa_chinensis RchiOBHm_Chr5g0044211
rosa_laevigata RLG00000034253
rosa_multiflora Rmu_sc0000776.1_g000081 Rmu_sc0002731.1_g000003
rosa_roxburghii Rroxscaffold_1G00036830
rosa_rugosa Rorug05G0211700
rosa_samantha Rh5BG304100 Rh5DG312800
rosa_wichuraiana Rw5G027460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 66, 116
AciI CCGC 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 2 cut(s) 45, 121
AfiI CCNNNNNNNGG 2 cut(s) 66, 116
AflIII ACRYGT 1 cut(s) 216
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 31, 282
AluI AGCT 2 cut(s) 31, 282
Alw26I GTCTC 1 cut(s) 297
Ama87I CYCGRG 1 cut(s) 39
AspS9I GGNCC 2 cut(s) 98, 131
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 2 cut(s) 98, 131
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 297
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 2 cut(s) 98, 131
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 98, 131
BmiI GGNNCC 2 cut(s) 100, 249
BmrFI CCNGG 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 61, 93
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 116
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 66, 116
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 66, 116
BsmAI GTCTC 1 cut(s) 297
BsoBI CYCGRG 1 cut(s) 39
Bsp143I GATC 2 cut(s) 138, 181
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 100, 249
BsrDI GCAATG 1 cut(s) 71
BssMI GATC 2 cut(s) 138, 181
Bst2UI CCWGG 1 cut(s) 111
BstDEI CTNAG 2 cut(s) 27, 283
BstKTI GATC 2 cut(s) 141, 184
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 2 cut(s) 138, 181
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 98, 131
Csp6I GTAC 2 cut(s) 44, 120
CviAII CATG 4 cut(s) 22, 34, 61, 217
CviJI RGCY 5 cut(s) 5, 17, 31, 250, 282
CviKI_1 RGCY 5 cut(s) 5, 17, 31, 250, 282
CviQI GTAC 2 cut(s) 44, 120
DdeI CTNAG 2 cut(s) 27, 283
DpnI GATC 2 cut(s) 140, 183
DpnII GATC 2 cut(s) 138, 181
Eco47I GGWCC 2 cut(s) 98, 131
Eco57I CTGAAG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 25, 37, 64, 220
FaiI YATR 8 cut(s) 23, 35, 50, 62, 149, 218, 222, 276
FatI CATG 4 cut(s) 21, 33, 60, 216
Hin1II CATG 4 cut(s) 25, 37, 64, 220
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 1 cut(s) 290
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 2 cut(s) 134, 202
Hpy188I TCNGA 2 cut(s) 286, 297
Hpy188III TCNNGA 2 cut(s) 96, 185
Hpy8I GTNNAC 2 cut(s) 134, 202
HpyAV CCTTC 2 cut(s) 28, 149
HpyCH4V TGCA 1 cut(s) 64
HpyF3I CTNAG 2 cut(s) 27, 283
Hsp92II CATG 4 cut(s) 25, 37, 64, 220
Kzo9I GATC 2 cut(s) 138, 181
LmnI GCTCC 2 cut(s) 187, 247
LpnPI CCDG 8 cut(s) 81, 93, 96, 108, 123, 165, 170, 270
MalI GATC 2 cut(s) 140, 183
MboI GATC 2 cut(s) 138, 181
MboII GAAGA 1 cut(s) 242
MluCI AATT 2 cut(s) 72, 252
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 4 cut(s) 48, 169, 217, 238
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
NdeII GATC 2 cut(s) 138, 181
NlaIII CATG 4 cut(s) 25, 37, 64, 220
NlaIV GGNNCC 2 cut(s) 100, 249
NspI RCATGY 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 39
PciI ACATGT 1 cut(s) 216
PflMI CCANNNNNTGG 2 cut(s) 66, 116
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PscI ACATGT 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 100, 249
PspPI GGNCC 2 cut(s) 98, 131
PspXI VCTCGAGB 1 cut(s) 39
RsaI GTAC 2 cut(s) 45, 121
RsaNI GTAC 2 cut(s) 44, 120
Sau3AI GATC 2 cut(s) 138, 181
Sau96I GGNCC 2 cut(s) 98, 131
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 111
SetI ASST 6 cut(s) 33, 115, 154, 160, 209, 284
Sfr274I CTCGAG 1 cut(s) 39
SinI GGWCC 2 cut(s) 98, 131
SlaI CTCGAG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 2 cut(s) 72, 252
SsiI CCGC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 109
TaqI TCGA 2 cut(s) 40, 85
TasI AATT 2 cut(s) 72, 252
TspDTI ATGAA 2 cut(s) 10, 249
Van91I CCANNNNNTGG 2 cut(s) 66, 116
VpaK11BI GGWCC 2 cut(s) 98, 131
XceI RCATGY 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.