RLG00000034253

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014974
Physical Location & Seq
Forward (+)
39440788 .. 39441701
914 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034253

Sequence Viewer

Length: 672 bp
ATGAGCATTAAGAAAGAGGCAAAGAGGAAGTTTGCAGAGAAGCATCGTGTTTGGGACAAACAACAAAAAAGAGAGAAACAAAAGGAAGAAGCTCTCTGGAATTTTCTTTCCTTTGAGGACCAGGAATCCAGGGGCCGCCTGGATCTAGATCGAAATCGAAGTAAGGGTGATATGGCGGAAGAGCATAGATGTCAGGCGCCGAAGCTGTGCGTGAACAACTGCGGATTCTTTGGGAGCCCAACCACGCAAAACTTGTGCTCCAAATGCTACCGTGATCTGCAACACAAAGAGCAACAAGCCCTCGCTCTCAATCAAACCTTCATCTCAGCTTCGTCCACCTCTTTTTCTTCTTCTTCTTCGGCTTGCTTCCCTTCATCGCCGGTCTCGGTCTCTTCGCGAGTGGCCGAGGACGCGACGAAGGTAGAGGAGAAGAAGAAGGAGGAAGTGGTGCCTACAGCGGAAGGGACGGCGGGGAGGCAGGCGAACAGGTGCACGGAGTGCAAGCAGCGCTTGGGGTTGACGGGGTTCAAGTGCAGGTGCGGGATGACGTACTGTAGGACCCATAGGTACCCAGAGAAGCACGAGTGTGGATTCGACTTCAGGAGCATGGGGAGGGAGCAGATCGCCAAGGCCAATCCGGTCATTAAGGGAGAGAAGCTGCAAAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

224

Amino Acids

25.43

Weight (kDa)

9.27

Isoelectric Point (pI)

59.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 69 - 91 1.5e-12 A20-like zinc finger
zf-AN1 PF01428 164 - 199 1.5e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27580 AT2G27580
fragaria_vesca FvH4_3g24650
malus_domestica MD03G1142300.v1.1 MD11G1162800.v1.1
prunus_persica Prupe.6G127400_v2.0.a1
pyrus_communis pycom03g09700
rosa_chinensis RchiOBHm_Chr5g0044211
rosa_laevigata RLG00000034253
rosa_multiflora Rmu_sc0000776.1_g000081 Rmu_sc0002731.1_g000003
rosa_roxburghii Rroxscaffold_1G00036830
rosa_rugosa Rorug05G0211700
rosa_samantha Rh5BG304100 Rh5DG312800
rosa_wichuraiana Rw5G027460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 525
Acc36I ACCTGC 1 cut(s) 525
Acc65I GGTACC 1 cut(s) 567
AccB1I GGYRCC 3 cut(s) 196, 448, 567
AccII CGCG 2 cut(s) 397, 413
AciI CCGC 6 cut(s) 136, 176, 222, 458, 470, 540
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 583
AcyI GRCGYC 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 498
AfaI GTAC 2 cut(s) 551, 569
AfeI AGCGCT 1 cut(s) 509
AgsI TTSAA 1 cut(s) 529
AjnI CCWGG 3 cut(s) 120, 128, 138
AleI CACNNNNGTG 1 cut(s) 585
AluBI AGCT 4 cut(s) 92, 205, 329, 658
AluI AGCT 4 cut(s) 92, 205, 329, 658
Alw21I GWGCWC 2 cut(s) 260, 494
Alw26I GTCTC 2 cut(s) 388, 394
Alw44I GTGCAC 1 cut(s) 490
AlwI GGATC 1 cut(s) 150
Aor51HI AGCGCT 1 cut(s) 509
AoxI GGCC 3 cut(s) 133, 402, 630
ApaLI GTGCAC 1 cut(s) 490
ApeKI GCWGC 2 cut(s) 505, 658
ApoI RAATTY 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 567
AspLEI GCGC 2 cut(s) 199, 510
AspS9I GGNCC 3 cut(s) 118, 133, 558
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 2 cut(s) 118, 558
BaeGI GKGCMC 1 cut(s) 494
BanI GGYRCC 3 cut(s) 196, 448, 567
BanII GRGCYC 1 cut(s) 239
BauI CACGAG 1 cut(s) 581
Bbv12I GWGCWC 2 cut(s) 260, 494
BbvI GCAGC 2 cut(s) 517, 645
BceAI ACGGC 1 cut(s) 483
BciT130I CCWGG 3 cut(s) 122, 130, 140
BcoDI GTCTC 2 cut(s) 388, 394
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 453, 553
BfoI RGCGCY 2 cut(s) 200, 511
BfuAI ACCTGC 1 cut(s) 525
BglII AGATCT 1 cut(s) 666
BisI GCNGC 3 cut(s) 136, 506, 659
BlsI GCNGC 3 cut(s) 137, 507, 660
Bme1390I CCNGG 3 cut(s) 122, 130, 140
Bme18I GGWCC 2 cut(s) 118, 558
BmgT120I GGNCC 3 cut(s) 118, 133, 558
BmiI GGNNCC 6 cut(s) 134, 198, 236, 450, 560, 569
BmrFI CCNGG 3 cut(s) 122, 130, 140
BmsI GCATC 1 cut(s) 52
BsaBI GATNNNNATC 2 cut(s) 147, 153
BsaHI GRCGYC 1 cut(s) 197
BsaI GGTCTC 2 cut(s) 388, 394
BsaJI CCNNGG 3 cut(s) 129, 405, 627
BsaWI WCCGGW 1 cut(s) 637
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bse118I RCCGGY 1 cut(s) 379
Bse8I GATNNNNATC 2 cut(s) 147, 153
BseBI CCWGG 3 cut(s) 122, 130, 140
BseDI CCNNGG 3 cut(s) 129, 405, 627
BseGI GGATG 1 cut(s) 549
BseJI GATNNNNATC 2 cut(s) 147, 153
BseMII CTCAG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 494
BseXI GCAGC 2 cut(s) 517, 645
BsgI GTGCAG 1 cut(s) 553
Bsh1236I CGCG 2 cut(s) 397, 413
BshFI GGCC 3 cut(s) 135, 404, 632
BshNI GGYRCC 3 cut(s) 196, 448, 567
BsiHKAI GWGCWC 2 cut(s) 260, 494
BsiSI CCGG 2 cut(s) 380, 638
BslFI GGGAC 2 cut(s) 68, 478
BsmAI GTCTC 2 cut(s) 388, 394
BsmFI GGGAC 2 cut(s) 68, 478
BsnI GGCC 3 cut(s) 135, 404, 632
Bso31I GGTCTC 2 cut(s) 388, 394
Bsp1286I GDGCHC 3 cut(s) 239, 260, 494
Bsp143I GATC 5 cut(s) 142, 148, 274, 621, 666
Bsp68I TCGCGA 1 cut(s) 397
BspACI CCGC 6 cut(s) 136, 176, 222, 458, 470, 540
BspANI GGCC 3 cut(s) 135, 404, 632
BspCNI CTCAG 1 cut(s) 338
BspFNI CGCG 2 cut(s) 397, 413
BspLI GGNNCC 6 cut(s) 134, 198, 236, 450, 560, 569
BspMI ACCTGC 1 cut(s) 525
BspPI GGATC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 174
BspT107I GGYRCC 3 cut(s) 196, 448, 567
BspTNI GGTCTC 2 cut(s) 388, 394
BsrFI RCCGGY 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 129, 405, 627
BssMI GATC 5 cut(s) 142, 148, 274, 621, 666
BssNI GRCGYC 1 cut(s) 197
BssSI CACGAG 1 cut(s) 581
BssT1I CCWWGG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 581
Bst2UI CCWGG 3 cut(s) 122, 130, 140
Bst4CI ACNGT 2 cut(s) 272, 554
Bst6I CTCTTC 2 cut(s) 174, 397
BstACI GRCGYC 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 498
BstC8I GCNNGC 3 cut(s) 364, 480, 503
BstDEI CTNAG 1 cut(s) 325
BstF5I GGATG 1 cut(s) 549
BstFNI CGCG 2 cut(s) 397, 413
BstH2I RGCGCY 2 cut(s) 200, 511
BstHHI GCGC 2 cut(s) 199, 510
BstKTI GATC 5 cut(s) 145, 151, 277, 624, 669
BstMAI GTCTC 2 cut(s) 388, 394
BstMBI GATC 5 cut(s) 142, 148, 274, 621, 666
BstMWI GCNNNNNNNGC 4 cut(s) 264, 410, 498, 507
BstNI CCWGG 3 cut(s) 122, 130, 140
BstSCI CCNGG 3 cut(s) 120, 128, 138
BstSFI CTRYAG 2 cut(s) 453, 553
BstSLI GKGCMC 1 cut(s) 494
BstUI CGCG 2 cut(s) 397, 413
BstV1I GCAGC 2 cut(s) 517, 645
BstX2I RGATCY 2 cut(s) 142, 666
BstYI RGATCY 2 cut(s) 142, 666
BsuRI GGCC 3 cut(s) 135, 404, 632
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 1 cut(s) 549
BtuMI TCGCGA 1 cut(s) 397
BveI ACCTGC 1 cut(s) 525
Cac8I GCNNGC 3 cut(s) 364, 480, 503
CfoI GCGC 2 cut(s) 199, 510
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 3 cut(s) 118, 133, 558
CseI GACGC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 550, 568
CviAII CATG 1 cut(s) 607
CviQI GTAC 2 cut(s) 550, 568
DdeI CTNAG 1 cut(s) 325
DinI GGCGCC 1 cut(s) 198
DpnI GATC 5 cut(s) 144, 150, 276, 623, 668
DpnII GATC 5 cut(s) 142, 148, 274, 621, 666
DraIII CACNNNGTG 1 cut(s) 498
EaeI YGGCCR 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 174, 397
EarI CTCTTC 2 cut(s) 174, 397
EciI GGCGGA 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 627
Eco24I GRGCYC 1 cut(s) 239
Eco31I GGTCTC 2 cut(s) 388, 394
Eco47I GGWCC 2 cut(s) 118, 558
Eco47III AGCGCT 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 558
EcoRII CCWGG 3 cut(s) 120, 128, 138
EcoT14I CCWWGG 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 239
EgeI GGCGCC 1 cut(s) 198
EheI GGCGCC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 1 cut(s) 610
FaiI YATR 4 cut(s) 173, 186, 564, 608
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 2 cut(s) 68, 478
FatI CATG 1 cut(s) 606
FauI CCCGC 2 cut(s) 463, 533
Fnu4HI GCNGC 3 cut(s) 136, 506, 659
FokI GGATG 1 cut(s) 556
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 3 cut(s) 136, 506, 659
FspBI CTAG 1 cut(s) 146
GlaI GCGC 2 cut(s) 198, 509
GluI GCNGC 3 cut(s) 136, 506, 659
HaeII RGCGCY 2 cut(s) 200, 511
HaeIII GGCC 3 cut(s) 135, 404, 632
HapII CCGG 2 cut(s) 380, 638
HgaI GACGC 1 cut(s) 419
HhaI GCGC 2 cut(s) 199, 510
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 1 cut(s) 610
Hin6I GCGC 2 cut(s) 197, 508
HinP1I GCGC 2 cut(s) 197, 508
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HinfI GANTC 3 cut(s) 125, 225, 591
HpaII CCGG 2 cut(s) 380, 638
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 4 cut(s) 214, 336, 492, 519
Hpy188III TCNNGA 4 cut(s) 97, 146, 396, 601
Hpy8I GTNNAC 4 cut(s) 214, 336, 492, 519
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 5 cut(s) 328, 381, 412, 430, 455
HpyCH4III ACNGT 2 cut(s) 272, 554
HpyCH4IV ACGT 1 cut(s) 548
HpyCH4V TGCA 6 cut(s) 35, 280, 492, 501, 534, 661
HpyF10VI GCNNNNNNNGC 4 cut(s) 264, 410, 498, 507
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 1 cut(s) 548
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 1 cut(s) 610
HspAI GCGC 2 cut(s) 197, 508
KasI GGCGCC 1 cut(s) 196
KpnI GGTACC 1 cut(s) 571
Kzo9I GATC 5 cut(s) 142, 148, 274, 621, 666
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 4 cut(s) 234, 263, 603, 616
Lsp1109I GCAGC 2 cut(s) 517, 645
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 548
MalI GATC 5 cut(s) 144, 150, 276, 623, 668
MboI GATC 5 cut(s) 142, 148, 274, 621, 666
MboII GAAGA 9 cut(s) 98, 191, 339, 342, 345, 348, 384, 442, 445
MflI RGATCY 2 cut(s) 142, 666
MhlI GDGCHC 3 cut(s) 239, 260, 494
MluCI AATT 1 cut(s) 100
Mly113I GGCGCC 1 cut(s) 197
MseI TTAA 2 cut(s) 9, 645
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 2 cut(s) 380, 638
MspR9I CCNGG 3 cut(s) 122, 130, 140
MvaI CCWGG 3 cut(s) 122, 130, 140
MvnI CGCG 2 cut(s) 397, 413
MwoI GCNNNNNNNGC 4 cut(s) 264, 410, 498, 507
NarI GGCGCC 1 cut(s) 197
NdeII GATC 5 cut(s) 142, 148, 274, 621, 666
NlaIII CATG 1 cut(s) 610
NlaIV GGNNCC 6 cut(s) 134, 198, 236, 450, 560, 569
NmeAIII GCCGAG 1 cut(s) 430
NruI TCGCGA 1 cut(s) 397
OliI CACNNNNGTG 1 cut(s) 585
PaqCI CACCTGC 1 cut(s) 525
PciSI GCTCTTC 1 cut(s) 174
PfeI GAWTC 3 cut(s) 125, 225, 591
PkrI GCNGC 3 cut(s) 137, 507, 660
PluTI GGCGCC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 558
Psp5II RGGWCCY 1 cut(s) 558
Psp6I CCWGG 3 cut(s) 120, 128, 138
PspGI CCWGG 3 cut(s) 120, 128, 138
PspN4I GGNNCC 6 cut(s) 134, 198, 236, 450, 560, 569
PspPI GGNCC 3 cut(s) 118, 133, 558
PspPPI RGGWCCY 1 cut(s) 558
PsuI RGATCY 2 cut(s) 142, 666
RruI TCGCGA 1 cut(s) 397
RsaI GTAC 2 cut(s) 551, 569
RsaNI GTAC 2 cut(s) 550, 568
RseI CAYNNNNRTG 1 cut(s) 585
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 9, 645
SatI GCNGC 3 cut(s) 136, 506, 659
Sau3AI GATC 5 cut(s) 142, 148, 274, 621, 666
Sau96I GGNCC 3 cut(s) 118, 133, 558
ScrFI CCNGG 3 cut(s) 122, 130, 140
SduI GDGCHC 3 cut(s) 239, 260, 494
SfaNI GCATC 1 cut(s) 52
SfcI CTRYAG 2 cut(s) 453, 553
SfoI GGCGCC 1 cut(s) 198
SinI GGWCC 2 cut(s) 118, 558
SmiMI CAYNNNNRTG 1 cut(s) 585
Sse9I AATT 1 cut(s) 100
SsiI CCGC 6 cut(s) 136, 176, 222, 458, 470, 540
SspDI GGCGCC 1 cut(s) 196
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 3 cut(s) 120, 128, 138
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 2 cut(s) 272, 554
TaiI ACGT 1 cut(s) 551
TaqI TCGA 3 cut(s) 151, 157, 594
TaqII GACCGA 1 cut(s) 376
TasI AATT 1 cut(s) 100
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 3 cut(s) 125, 225, 591
Tru1I TTAA 2 cut(s) 9, 645
Tru9I TTAA 2 cut(s) 9, 645
TseI GCWGC 2 cut(s) 505, 658
TspDTI ATGAA 2 cut(s) 310, 363
TspGWI ACGGA 1 cut(s) 509
VneI GTGCAC 1 cut(s) 490
VpaK11BI GGWCC 2 cut(s) 118, 558
XapI RAATTY 1 cut(s) 100
XbaI TCTAGA 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.