Rh5BG304100

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014974
Physical Location & Seq
Forward (+)
39338171 .. 39341429
3259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG304100.1

Sequence Viewer

Length: 840 bp
ATGTTTGTTAACAGAAACAGGCCCAACAACATAGCCCTCCTTGTTTGCCCCATCAGAATTGAGGCTCGGCCCAATAATTTGCAGCTCTGGCCTAGCCAACCCAGCGGTCAACCCAGAAGAGCACGTGTTGCACTTCCAGCAGACATTGATCCCAGGCCCGCCTCCGTAGCCAGTTTAGCCATTTCCAGCACCGCTAGCCCCTTCGACGCCGCATGGGACATCCCTAGACCTCCAACCGCAGCCATAGACGTCAGCGAACCTAGCACAGAACTCAGCGCCACACAGTCAAATCCTCAGGATCTAGATCGAAATCGAAGTAAGGTGATCGATATGGCGGAAGAGCATAGATGCCAGGCGCCGAAGCTGTGCGTGAACAACTGCGGATTCTTCGGGAGCCCAACCACGCAAAACCTGTGCTCCAAATGCTACCGTGATCTGCAGCACAAAGAGCAACAAGCCCTCGCTCTCAATCAAACCTTCATCTCAGCTTCGTCCACCTCTTCTTCTTCTTCGGCTTTCTTCCCTTCGTCGCCGGTCTCGGTCTCGGTCTCGTCGCCGCAGAACGAGGGCGCGGCCGAGGACGCGACGAAGGTAGAGGAGGAGAAGAAGAAGAAGGAGGAAGCGGTGCCCGGGACGGCGGGGAGGCAGGCGAACAGGTGCACGGAGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCAGGTGCGGGATGACGTACTGCGGGACCCACAGGTACCCGGAGAAGCACGAGTGCGGGTTCGACTTCAGGAGCATGGGGAGGGAGCAGATCGCCAAGGCCAATCCGGTCGTCAAGGGCGACAAGCTGCAGAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

279

Amino Acids

30.57

Weight (kDa)

8.94

Isoelectric Point (pI)

68.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 122 - 144 2e-12 A20-like zinc finger
zf-AN1 PF01428 220 - 255 1.7e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27580 AT2G27580
fragaria_vesca FvH4_3g24650
malus_domestica MD03G1142300.v1.1 MD11G1162800.v1.1
prunus_persica Prupe.6G127400_v2.0.a1
pyrus_communis pycom03g09700
rosa_chinensis RchiOBHm_Chr5g0044211
rosa_laevigata RLG00000034253
rosa_multiflora Rmu_sc0000776.1_g000081 Rmu_sc0002731.1_g000003
rosa_roxburghii Rroxscaffold_1G00036830
rosa_rugosa Rorug05G0211700
rosa_samantha Rh5BG304100 Rh5DG312800
rosa_wichuraiana Rw5G027460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 693
AatII GACGTC 1 cut(s) 252
Acc36I ACCTGC 1 cut(s) 693
Acc65I GGTACC 1 cut(s) 735
AccB1I GGYRCC 3 cut(s) 355, 625, 735
AccII CGCG 3 cut(s) 572, 584, 678
AclWI GGATC 2 cut(s) 143, 306
AcoI YGGCCR 1 cut(s) 573
AcuI CTGAAG 1 cut(s) 751
AcvI CACGTG 1 cut(s) 125
AcyI GRCGYC 3 cut(s) 207, 249, 356
AdeI CACNNNGTG 1 cut(s) 666
AfaI GTAC 2 cut(s) 719, 737
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 1 cut(s) 697
AjnI CCWGG 2 cut(s) 152, 351
AluBI AGCT 4 cut(s) 85, 364, 488, 826
AluI AGCT 4 cut(s) 85, 364, 488, 826
Alw21I GWGCWC 3 cut(s) 124, 419, 662
Alw26I GTCTC 3 cut(s) 541, 547, 553
Alw44I GTGCAC 1 cut(s) 658
AlwI GGATC 2 cut(s) 143, 306
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 6 cut(s) 20, 68, 89, 155, 573, 798
ApaLI GTGCAC 1 cut(s) 658
ApeKI GCWGC 4 cut(s) 82, 239, 439, 826
Asp718I GGTACC 1 cut(s) 735
AspLEI GCGC 4 cut(s) 278, 358, 572, 678
AspS9I GGNCC 4 cut(s) 21, 69, 156, 726
AsuC2I CCSGG 3 cut(s) 630, 631, 740
AsuHPI GGTGA 1 cut(s) 334
AsuNHI GCTAGC 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 1 cut(s) 726
AxyI CCTNAGG 1 cut(s) 294
BaeGI GKGCMC 2 cut(s) 630, 662
BanI GGYRCC 3 cut(s) 355, 625, 735
BanII GRGCYC 1 cut(s) 398
BauI CACGAG 1 cut(s) 749
BbrPI CACGTG 1 cut(s) 125
Bbv12I GWGCWC 3 cut(s) 124, 419, 662
BbvI GCAGC 4 cut(s) 94, 251, 451, 813
BccI CCATC 1 cut(s) 59
BceAI ACGGC 1 cut(s) 651
BciT130I CCWGG 2 cut(s) 154, 353
BcnI CCSGG 3 cut(s) 630, 631, 740
BcoDI GTCTC 3 cut(s) 541, 547, 553
BfaI CTAG 5 cut(s) 93, 195, 225, 261, 302
BfmI CTRYAG 2 cut(s) 437, 827
BfoI RGCGCY 2 cut(s) 279, 359
BfuAI ACCTGC 1 cut(s) 693
BglII AGATCT 1 cut(s) 834
BisI GCNGC 8 cut(s) 83, 210, 240, 440, 557, 573, 674, 827
BlsI GCNGC 8 cut(s) 84, 211, 241, 441, 558, 574, 675, 828
Bme1390I CCNGG 5 cut(s) 154, 353, 630, 631, 740
Bme18I GGWCC 1 cut(s) 726
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 4 cut(s) 21, 69, 156, 726
BmiI GGNNCC 6 cut(s) 357, 395, 627, 727, 728, 737
BmrFI CCNGG 5 cut(s) 154, 353, 630, 631, 740
BmsI GCATC 1 cut(s) 338
BmtI GCTAGC 1 cut(s) 198
BpuMI CCSGG 3 cut(s) 630, 631, 740
Bsa29I ATCGAT 1 cut(s) 327
BsaAI YACGTR 1 cut(s) 125
BsaBI GATNNNNATC 2 cut(s) 303, 309
BsaHI GRCGYC 3 cut(s) 207, 249, 356
BsaI GGTCTC 3 cut(s) 541, 547, 553
BsaJI CCNNGG 4 cut(s) 152, 576, 629, 795
BsaWI WCCGGW 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 171
Bse21I CCTNAGG 1 cut(s) 294
Bse8I GATNNNNATC 2 cut(s) 303, 309
BseBI CCWGG 2 cut(s) 154, 353
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 4 cut(s) 152, 576, 629, 795
BseGI GGATG 2 cut(s) 219, 717
BseJI GATNNNNATC 2 cut(s) 303, 309
BseMII CTCAG 3 cut(s) 286, 308, 498
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 611, 614
BseSI GKGCMC 2 cut(s) 630, 662
BseX3I CGGCCG 1 cut(s) 573
BseXI GCAGC 4 cut(s) 94, 251, 451, 813
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 2 cut(s) 688, 721
Bsh1236I CGCG 3 cut(s) 572, 584, 678
Bsh1285I CGRYCG 2 cut(s) 576, 810
BshFI GGCC 6 cut(s) 22, 70, 91, 157, 575, 800
BshNI GGYRCC 3 cut(s) 355, 625, 735
BshVI ATCGAT 1 cut(s) 327
BsiEI CGRYCG 2 cut(s) 576, 810
BsiHKAI GWGCWC 3 cut(s) 124, 419, 662
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 4 cut(s) 533, 630, 740, 806
BslFI GGGAC 3 cut(s) 230, 646, 739
BsmAI GTCTC 3 cut(s) 541, 547, 553
BsmFI GGGAC 3 cut(s) 230, 646, 739
BsnI GGCC 6 cut(s) 22, 70, 91, 157, 575, 800
Bso31I GGTCTC 3 cut(s) 541, 547, 553
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 5 cut(s) 124, 398, 419, 630, 662
Bsp143I GATC 7 cut(s) 148, 298, 304, 324, 433, 789, 834
BspANI GGCC 6 cut(s) 22, 70, 91, 157, 575, 800
BspCNI CTCAG 3 cut(s) 285, 307, 497
BspDI ATCGAT 1 cut(s) 327
BspFNI CGCG 3 cut(s) 572, 584, 678
BspLI GGNNCC 6 cut(s) 357, 395, 627, 727, 728, 737
BspMAI CTGCAG 2 cut(s) 441, 831
BspMI ACCTGC 1 cut(s) 693
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 2 cut(s) 143, 306
BspQI GCTCTTC 2 cut(s) 112, 333
BspT107I GGYRCC 3 cut(s) 355, 625, 735
BspTNI GGTCTC 3 cut(s) 541, 547, 553
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 4 cut(s) 152, 576, 629, 795
BssMI GATC 7 cut(s) 148, 298, 304, 324, 433, 789, 834
BssNI GRCGYC 3 cut(s) 207, 249, 356
BssSI CACGAG 1 cut(s) 749
BssT1I CCWWGG 1 cut(s) 795
Bst2BI CACGAG 1 cut(s) 749
Bst2UI CCWGG 2 cut(s) 154, 353
Bst4CI ACNGT 2 cut(s) 285, 431
Bst6I CTCTTC 3 cut(s) 112, 333, 505
BstACI GRCGYC 3 cut(s) 207, 249, 356
BstAPI GCANNNNNTGC 2 cut(s) 128, 666
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 4 cut(s) 159, 196, 648, 671
BstDEI CTNAG 3 cut(s) 272, 294, 484
BstF5I GGATG 2 cut(s) 219, 717
BstFNI CGCG 3 cut(s) 572, 584, 678
BstH2I RGCGCY 2 cut(s) 279, 359
BstHHI GCGC 4 cut(s) 278, 358, 572, 678
BstKTI GATC 7 cut(s) 151, 301, 307, 327, 436, 792, 837
BstMAI GTCTC 3 cut(s) 541, 547, 553
BstMBI GATC 7 cut(s) 148, 298, 304, 324, 433, 789, 834
BstMCI CGRYCG 2 cut(s) 576, 810
BstNI CCWGG 2 cut(s) 154, 353
BstSCI CCNGG 5 cut(s) 152, 351, 628, 629, 738
BstSFI CTRYAG 2 cut(s) 437, 827
BstSLI GKGCMC 2 cut(s) 630, 662
BstUI CGCG 3 cut(s) 572, 584, 678
BstV1I GCAGC 4 cut(s) 94, 251, 451, 813
BstX2I RGATCY 2 cut(s) 298, 834
BstYI RGATCY 2 cut(s) 298, 834
BstZI CGGCCG 1 cut(s) 573
Bsu15I ATCGAT 1 cut(s) 327
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 6 cut(s) 22, 70, 91, 157, 575, 800
BsuTUI ATCGAT 1 cut(s) 327
BtsCI GGATG 2 cut(s) 219, 717
BveI ACCTGC 1 cut(s) 693
Cac8I GCNNGC 4 cut(s) 159, 196, 648, 671
CfoI GCGC 4 cut(s) 278, 358, 572, 678
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 4 cut(s) 21, 69, 156, 726
Cfr9I CCCGGG 1 cut(s) 629
ClaI ATCGAT 1 cut(s) 327
CseI GACGC 2 cut(s) 215, 590
Csp6I GTAC 2 cut(s) 718, 736
CviAII CATG 2 cut(s) 213, 775
CviQI GTAC 2 cut(s) 718, 736
DdeI CTNAG 3 cut(s) 272, 294, 484
DinI GGCGCC 1 cut(s) 357
DpnI GATC 7 cut(s) 150, 300, 306, 326, 435, 791, 836
DpnII GATC 7 cut(s) 148, 298, 304, 324, 433, 789, 834
DraIII CACNNNGTG 1 cut(s) 666
EaeI YGGCCR 1 cut(s) 573
EagI CGGCCG 1 cut(s) 573
Eam1104I CTCTTC 3 cut(s) 112, 333, 505
EarI CTCTTC 3 cut(s) 112, 333, 505
EciI GGCGGA 1 cut(s) 350
EclXI CGGCCG 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 795
Eco24I GRGCYC 1 cut(s) 398
Eco31I GGTCTC 3 cut(s) 541, 547, 553
Eco47I GGWCC 1 cut(s) 726
Eco52I CGGCCG 1 cut(s) 573
Eco57I CTGAAG 1 cut(s) 751
Eco72I CACGTG 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 629
EcoO109I RGGNCCY 1 cut(s) 726
EcoRII CCWGG 2 cut(s) 152, 351
EcoT14I CCWWGG 1 cut(s) 795
EcoT38I GRGCYC 1 cut(s) 398
EgeI GGCGCC 1 cut(s) 357
EheI GGCGCC 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 795
FaeI CATG 2 cut(s) 216, 778
FaiI YATR 6 cut(s) 32, 214, 245, 332, 345, 776
FaqI GGGAC 3 cut(s) 230, 646, 739
FatI CATG 2 cut(s) 212, 774
FauI CCCGC 5 cut(s) 166, 631, 701, 716, 749
Fnu4HI GCNGC 8 cut(s) 83, 210, 240, 440, 557, 573, 674, 827
FokI GGATG 2 cut(s) 206, 724
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 8 cut(s) 83, 210, 240, 440, 557, 573, 674, 827
FspBI CTAG 5 cut(s) 93, 195, 225, 261, 302
GlaI GCGC 4 cut(s) 277, 357, 571, 677
GluI GCNGC 8 cut(s) 83, 210, 240, 440, 557, 573, 674, 827
GsaI CCCAGC 1 cut(s) 105
HaeII RGCGCY 2 cut(s) 279, 359
HaeIII GGCC 6 cut(s) 22, 70, 91, 157, 575, 800
HapII CCGG 4 cut(s) 533, 630, 740, 806
HgaI GACGC 2 cut(s) 215, 590
HhaI GCGC 4 cut(s) 278, 358, 572, 678
Hin1I GRCGYC 3 cut(s) 207, 249, 356
Hin1II CATG 2 cut(s) 216, 778
Hin6I GCGC 4 cut(s) 276, 356, 570, 676
HinP1I GCGC 4 cut(s) 276, 356, 570, 676
HincII GTYRAC 3 cut(s) 10, 110, 687
HindII GTYRAC 3 cut(s) 10, 110, 687
HinfI GANTC 1 cut(s) 384
HpaI GTTAAC 1 cut(s) 10
HpaII CCGG 4 cut(s) 533, 630, 740, 806
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 6 cut(s) 10, 110, 373, 495, 660, 687
Hpy188I TCNGA 2 cut(s) 56, 839
Hpy188III TCNNGA 4 cut(s) 296, 302, 391, 769
Hpy8I GTNNAC 6 cut(s) 10, 110, 373, 495, 660, 687
Hpy99I CGWCG 4 cut(s) 209, 532, 556, 589
HpyAV CCTTC 5 cut(s) 211, 487, 534, 583, 607
HpyCH4III ACNGT 2 cut(s) 285, 431
HpyCH4IV ACGT 3 cut(s) 124, 249, 716
HpyCH4V TGCA 7 cut(s) 82, 131, 439, 660, 669, 702, 829
HpyF3I CTNAG 3 cut(s) 272, 294, 484
HpySE526I ACGT 3 cut(s) 124, 249, 716
Hsp92I GRCGYC 3 cut(s) 207, 249, 356
Hsp92II CATG 2 cut(s) 216, 778
HspAI GCGC 4 cut(s) 276, 356, 570, 676
KasI GGCGCC 1 cut(s) 355
KflI GGGWCCC 1 cut(s) 726
KpnI GGTACC 1 cut(s) 739
KspAI GTTAAC 1 cut(s) 10
Kzo9I GATC 7 cut(s) 148, 298, 304, 324, 433, 789, 834
LguI GCTCTTC 2 cut(s) 112, 333
LmnI GCTCC 4 cut(s) 393, 422, 771, 784
Lsp1109I GCAGC 4 cut(s) 94, 251, 451, 813
LweI GCATC 1 cut(s) 338
MaeI CTAG 5 cut(s) 93, 195, 225, 261, 302
MaeII ACGT 3 cut(s) 124, 249, 716
MalI GATC 7 cut(s) 150, 300, 306, 326, 435, 791, 836
MboI GATC 7 cut(s) 148, 298, 304, 324, 433, 789, 834
MflI RGATCY 2 cut(s) 298, 834
MhlI GDGCHC 5 cut(s) 124, 398, 419, 630, 662
MluCI AATT 2 cut(s) 57, 76
Mly113I GGCGCC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 257
MseI TTAA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 105
MspI CCGG 4 cut(s) 533, 630, 740, 806
MspR9I CCNGG 5 cut(s) 154, 353, 630, 631, 740
MvaI CCWGG 2 cut(s) 154, 353
MvnI CGCG 3 cut(s) 572, 584, 678
NarI GGCGCC 1 cut(s) 356
NciI CCSGG 3 cut(s) 630, 631, 740
NdeII GATC 7 cut(s) 148, 298, 304, 324, 433, 789, 834
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 2 cut(s) 216, 778
NlaIV GGNNCC 6 cut(s) 357, 395, 627, 727, 728, 737
NmeAIII GCCGAG 2 cut(s) 46, 601
PaqCI CACCTGC 1 cut(s) 693
PciSI GCTCTTC 2 cut(s) 112, 333
PcsI WCGNNNNNNNCGW 1 cut(s) 816
PfeI GAWTC 1 cut(s) 384
PkrI GCNGC 8 cut(s) 84, 211, 241, 441, 558, 574, 675, 828
PluTI GGCGCC 1 cut(s) 359
PmaCI CACGTG 1 cut(s) 125
PmlI CACGTG 1 cut(s) 125
Ppu21I YACGTR 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 726
Psp5II RGGWCCY 1 cut(s) 726
Psp6I CCWGG 2 cut(s) 152, 351
PspCI CACGTG 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 2 cut(s) 152, 351
PspN4I GGNNCC 6 cut(s) 357, 395, 627, 727, 728, 737
PspPI GGNCC 4 cut(s) 21, 69, 156, 726
PspPPI RGGWCCY 1 cut(s) 726
PstI CTGCAG 2 cut(s) 441, 831
PsuI RGATCY 2 cut(s) 298, 834
RsaI GTAC 2 cut(s) 719, 737
RsaNI GTAC 2 cut(s) 718, 736
SapI GCTCTTC 2 cut(s) 112, 333
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 8 cut(s) 83, 210, 240, 440, 557, 573, 674, 827
Sau3AI GATC 7 cut(s) 148, 298, 304, 324, 433, 789, 834
Sau96I GGNCC 4 cut(s) 21, 69, 156, 726
ScrFI CCNGG 5 cut(s) 154, 353, 630, 631, 740
SduI GDGCHC 5 cut(s) 124, 398, 419, 630, 662
SfaNI GCATC 1 cut(s) 338
SfcI CTRYAG 2 cut(s) 437, 827
SfoI GGCGCC 1 cut(s) 357
SinI GGWCC 1 cut(s) 726
SmaI CCCGGG 1 cut(s) 631
Sse9I AATT 2 cut(s) 57, 76
SspDI GGCGCC 1 cut(s) 355
SspMI CTAG 5 cut(s) 93, 195, 225, 261, 302
StyD4I CCNGG 5 cut(s) 152, 351, 628, 629, 738
StyI CCWWGG 1 cut(s) 795
TaaI ACNGT 2 cut(s) 285, 431
TaiI ACGT 3 cut(s) 127, 252, 719
TaqI TCGA 5 cut(s) 204, 307, 313, 327, 762
TaqII GACCGA 2 cut(s) 529, 535
TasI AATT 2 cut(s) 57, 76
TauI GCSGC 4 cut(s) 212, 559, 575, 676
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 4 cut(s) 82, 239, 439, 826
TspDTI ATGAA 1 cut(s) 469
TspGWI ACGGA 2 cut(s) 154, 677
TspMI CCCGGG 1 cut(s) 629
VneI GTGCAC 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 726
XbaI TCTAGA 1 cut(s) 301
XmaI CCCGGG 1 cut(s) 629
XspI CTAG 5 cut(s) 93, 195, 225, 261, 302
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.