MD11G1162800.v1.1

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014974
Physical Location & Seq
Forward (+)
16433534 .. 16434879
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1162800.v1.1.491

Sequence Viewer

Length: 330 bp
ATGTCTGCTTTCATCTCCGCCGGTCTCCGTCTCGCCCGCGCACGAGGCGCAGGTGGAGCGTGTGATCGAAGCGAAGGAAGAAGAGAAGGAGGCGGCGCCGAACATGACGTGCCGGCGGCGCCGTCGGCAGGGGCGCATGCAAACAAGTGCATGACGTGCCGGCGGCGCGTAGGGTTGACGGGGTTCCAGTGCAGGTGCGGGATGACGTTCTGTGGGACCCACAGGTACCCGGAGCAGCACGCGTGCGGGTTCGACTTCAGAGGGATGGGAAAGGAGCAGATCGCCAAGGCCAACCCGGTCGTCAAGGCGGATAAGCTGCAGAAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

110

Amino Acids

11.58

Weight (kDa)

9.66

Isoelectric Point (pI)

59.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 51 - 85 3e-10 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014974)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27580 AT2G27580
fragaria_vesca FvH4_3g24650
malus_domestica MD03G1142300.v1.1 MD11G1162800.v1.1
prunus_persica Prupe.6G127400_v2.0.a1
pyrus_communis pycom03g09700
rosa_chinensis RchiOBHm_Chr5g0044211
rosa_laevigata RLG00000034253
rosa_multiflora Rmu_sc0000776.1_g000081 Rmu_sc0002731.1_g000003
rosa_roxburghii Rroxscaffold_1G00036830
rosa_rugosa Rorug05G0211700
rosa_samantha Rh5BG304100 Rh5DG312800
rosa_wichuraiana Rw5G027460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 41, 183
Acc36I ACCTGC 2 cut(s) 41, 183
Acc65I GGTACC 1 cut(s) 225
AccB1I GGYRCC 3 cut(s) 95, 118, 225
AccII CGCG 3 cut(s) 39, 168, 242
AciI CCGC 8 cut(s) 18, 37, 93, 116, 163, 198, 246, 308
AcuI CTGAAG 1 cut(s) 241
AcyI GRCGYC 2 cut(s) 96, 119
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 128
AflIII ACRYGT 1 cut(s) 240
AjiI CACGTC 2 cut(s) 109, 156
AluBI AGCT 1 cut(s) 316
AluI AGCT 1 cut(s) 316
Alw26I GTCTC 2 cut(s) 29, 35
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 235, 316
Asp718I GGTACC 1 cut(s) 225
AspLEI GCGC 6 cut(s) 41, 50, 98, 121, 136, 168
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 2 cut(s) 230, 296
AvaII GGWCC 1 cut(s) 216
BanI GGYRCC 3 cut(s) 95, 118, 225
BauI CACGAG 1 cut(s) 42
BbvI GCAGC 2 cut(s) 247, 303
BccI CCATC 1 cut(s) 259
BceAI ACGGC 1 cut(s) 106
BcnI CCSGG 2 cut(s) 230, 296
BcoDI GTCTC 2 cut(s) 29, 35
BfmI CTRYAG 1 cut(s) 317
BfoI RGCGCY 2 cut(s) 99, 122
BfuAI ACCTGC 2 cut(s) 41, 183
BglII AGATCT 1 cut(s) 324
BisI GCNGC 5 cut(s) 94, 117, 164, 236, 317
BlsI GCNGC 5 cut(s) 95, 118, 165, 237, 318
Bme1390I CCNGG 2 cut(s) 230, 296
Bme18I GGWCC 1 cut(s) 216
BmgBI CACGTC 2 cut(s) 109, 156
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 6 cut(s) 97, 120, 185, 217, 218, 227
BmrFI CCNGG 2 cut(s) 230, 296
BpuMI CCSGG 2 cut(s) 230, 296
BsaHI GRCGYC 2 cut(s) 96, 119
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 285
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse118I RCCGGY 3 cut(s) 20, 112, 159
Bse1I ACTGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 207, 270
BseLI CCNNNNNNNGG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 2 cut(s) 247, 303
BsgI GTGCAG 1 cut(s) 211
Bsh1236I CGCG 3 cut(s) 39, 168, 242
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 290
BshNI GGYRCC 3 cut(s) 95, 118, 225
BsiEI CGRYCG 1 cut(s) 300
BsiSI CCGG 5 cut(s) 21, 113, 160, 230, 296
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 128
BsmAI GTCTC 2 cut(s) 29, 35
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 290
Bso31I GGTCTC 1 cut(s) 29
Bsp143I GATC 3 cut(s) 64, 279, 324
BspACI CCGC 8 cut(s) 18, 37, 93, 116, 163, 198, 246, 308
BspANI GGCC 1 cut(s) 290
BspFNI CGCG 3 cut(s) 39, 168, 242
BspLI GGNNCC 6 cut(s) 97, 120, 185, 217, 218, 227
BspMAI CTGCAG 1 cut(s) 321
BspMI ACCTGC 2 cut(s) 41, 183
BspT107I GGYRCC 3 cut(s) 95, 118, 225
BspTNI GGTCTC 1 cut(s) 29
BsrFI RCCGGY 3 cut(s) 20, 112, 159
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 3 cut(s) 20, 112, 159
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 3 cut(s) 64, 279, 324
BssNI GRCGYC 2 cut(s) 96, 119
BssSI CACGAG 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 76
BstACI GRCGYC 2 cut(s) 96, 119
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 6 cut(s) 37, 114, 138, 161, 240, 244
BstF5I GGATG 2 cut(s) 207, 270
BstFNI CGCG 3 cut(s) 39, 168, 242
BstH2I RGCGCY 2 cut(s) 99, 122
BstHHI GCGC 6 cut(s) 41, 50, 98, 121, 136, 168
BstKTI GATC 3 cut(s) 67, 282, 327
BstMAI GTCTC 2 cut(s) 29, 35
BstMBI GATC 3 cut(s) 64, 279, 324
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 7 cut(s) 45, 47, 56, 118, 125, 156, 165
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 228, 294
BstSFI CTRYAG 1 cut(s) 317
BstUI CGCG 3 cut(s) 39, 168, 242
BstV1I GCAGC 2 cut(s) 247, 303
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 1 cut(s) 290
BtrI CACGTC 2 cut(s) 109, 156
BtsCI GGATG 2 cut(s) 207, 270
BtsIMutI CAGTG 1 cut(s) 194
BveI ACCTGC 2 cut(s) 41, 183
Cac8I GCNNGC 6 cut(s) 37, 114, 138, 161, 240, 244
CfoI GCGC 6 cut(s) 41, 50, 98, 121, 136, 168
Cfr10I RCCGGY 3 cut(s) 20, 112, 159
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 226
CviAII CATG 3 cut(s) 104, 137, 151
CviJI RGCY 2 cut(s) 290, 316
CviKI_1 RGCY 2 cut(s) 290, 316
CviQI GTAC 1 cut(s) 226
DinI GGCGCC 2 cut(s) 97, 120
DpnI GATC 3 cut(s) 66, 281, 326
DpnII GATC 3 cut(s) 64, 279, 324
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
EciI GGCGGA 2 cut(s) 7, 323
Eco130I CCWWGG 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 285
EgeI GGCGCC 2 cut(s) 97, 120
EheI GGCGCC 2 cut(s) 97, 120
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 3 cut(s) 107, 140, 154
FaiI YATR 3 cut(s) 105, 138, 152
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 103, 136, 150
FauI CCCGC 3 cut(s) 44, 191, 239
Fnu4HI GCNGC 5 cut(s) 94, 117, 164, 236, 317
FokI GGATG 2 cut(s) 214, 277
Fsp4HI GCNGC 5 cut(s) 94, 117, 164, 236, 317
GlaI GCGC 6 cut(s) 40, 49, 97, 120, 135, 167
GluI GCNGC 5 cut(s) 94, 117, 164, 236, 317
HaeII RGCGCY 2 cut(s) 99, 122
HaeIII GGCC 1 cut(s) 290
HapII CCGG 5 cut(s) 21, 113, 160, 230, 296
HhaI GCGC 6 cut(s) 41, 50, 98, 121, 136, 168
Hin1I GRCGYC 2 cut(s) 96, 119
Hin1II CATG 3 cut(s) 107, 140, 154
Hin6I GCGC 6 cut(s) 39, 48, 96, 119, 134, 166
HinP1I GCGC 6 cut(s) 39, 48, 96, 119, 134, 166
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HpaII CCGG 5 cut(s) 21, 113, 160, 230, 296
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 260, 329
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 2 cut(s) 68, 80
HpyCH4IV ACGT 3 cut(s) 108, 155, 206
HpyCH4V TGCA 4 cut(s) 140, 150, 192, 319
HpyF10VI GCNNNNNNNGC 7 cut(s) 45, 47, 56, 118, 125, 156, 165
HpySE526I ACGT 3 cut(s) 108, 155, 206
Hsp92I GRCGYC 2 cut(s) 96, 119
Hsp92II CATG 3 cut(s) 107, 140, 154
HspAI GCGC 6 cut(s) 39, 48, 96, 119, 134, 166
KasI GGCGCC 2 cut(s) 95, 118
KflI GGGWCCC 1 cut(s) 216
KpnI GGTACC 1 cut(s) 229
KroI GCCGGC 2 cut(s) 112, 159
KroNI GCCGGC 2 cut(s) 114, 161
Kzo9I GATC 3 cut(s) 64, 279, 324
LmnI GCTCC 3 cut(s) 56, 232, 274
Lsp1109I GCAGC 2 cut(s) 247, 303
MaeII ACGT 3 cut(s) 108, 155, 206
MalI GATC 3 cut(s) 66, 281, 326
MboI GATC 3 cut(s) 64, 279, 324
MboII GAAGA 2 cut(s) 90, 93
MflI RGATCY 1 cut(s) 324
MluI ACGCGT 1 cut(s) 240
Mly113I GGCGCC 2 cut(s) 96, 119
MnlI CCTC 3 cut(s) 38, 83, 254
MroNI GCCGGC 2 cut(s) 112, 159
MspI CCGG 5 cut(s) 21, 113, 160, 230, 296
MspR9I CCNGG 2 cut(s) 230, 296
MvnI CGCG 3 cut(s) 39, 168, 242
MwoI GCNNNNNNNGC 7 cut(s) 45, 47, 56, 118, 125, 156, 165
NaeI GCCGGC 2 cut(s) 114, 161
NarI GGCGCC 2 cut(s) 96, 119
NciI CCSGG 2 cut(s) 230, 296
NdeII GATC 3 cut(s) 64, 279, 324
NgoMIV GCCGGC 2 cut(s) 112, 159
NlaIII CATG 3 cut(s) 107, 140, 154
NlaIV GGNNCC 6 cut(s) 97, 120, 185, 217, 218, 227
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PaqCI CACCTGC 2 cut(s) 41, 183
PdiI GCCGGC 2 cut(s) 114, 161
PkrI GCNGC 5 cut(s) 95, 118, 165, 237, 318
PluTI GGCGCC 2 cut(s) 99, 122
PpuMI RGGWCCY 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 216
PspN4I GGNNCC 6 cut(s) 97, 120, 185, 217, 218, 227
PspPI GGNCC 1 cut(s) 216
PspPPI RGGWCCY 1 cut(s) 216
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SatI GCNGC 5 cut(s) 94, 117, 164, 236, 317
Sau3AI GATC 3 cut(s) 64, 279, 324
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 2 cut(s) 230, 296
SetI ASST 7 cut(s) 55, 111, 158, 197, 209, 227, 318
SfcI CTRYAG 1 cut(s) 317
SfoI GGCGCC 2 cut(s) 97, 120
SinI GGWCC 1 cut(s) 216
SphI GCATGC 1 cut(s) 140
SsiI CCGC 8 cut(s) 18, 37, 93, 116, 163, 198, 246, 308
SspDI GGCGCC 2 cut(s) 95, 118
StyD4I CCNGG 2 cut(s) 228, 294
StyI CCWWGG 1 cut(s) 285
TaiI ACGT 3 cut(s) 111, 158, 209
TaqI TCGA 2 cut(s) 67, 252
TauI GCSGC 3 cut(s) 96, 119, 166
TscAI CASTG 1 cut(s) 194
TseI GCWGC 2 cut(s) 235, 316
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 216
XceI RCATGY 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.