Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006306

Physical Location & Seq

Genomic Coordinates Forward (+)

18141096 .. 18146810

Gene Structure 5715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25110.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGAACAATAAGGGCAAGAGGGAGGTGGTGGTCTCAGCTTTGCAGTTCGCTTGCACCGACGACGTCGCCACCAACGTCGCCACCGCCGAAAGGTTGGTTAGAGCTGCTCATTCAAAAGGTGCAAACATCATTCTTATACAGGAGCTTTTTGAAGGATATTACTTCTGTCAAGCACAAAGGGAGGATTTCATTCAGCGAGCAAAGCCCTGCAGCAACCATCCAACTATTCTTAGGATGCAGAAACTTGCAAAAGAGTTGGGTGTGGTAATTCCTGTTAGCTTTTTTGAAGAGGCAAACAATGCCCACTACAATTCGATAGCCATTATTGATGCAGATGGTGCAGATCTTGGACTTTATAGAAAGTCCCACATCCCAGATGGACCAGGCTACCAGGAAAAGTTCTACTTCAATCCAGGTGACACTGGATTCAAGGTTTTCCAGACCAAGTTCGCAAAAATAGGAGTTGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGAGCTTTGGTTCTTCAAGGTGCAGAGATTTTGTTTTATCCTACTGCTATTGGTTCTGAACCTCAAGATGGAGGACTTGATTCTCGGGATCACTGGAGGCGAGTAATGCAAGGGCATGCCGGGGCAAATTTGGTGCCTGTAGTAGCATCAAACCGCATAGGAAAGGAGATAATTGAGACTGAGCATGGAAAGAGTGAGATCACATTTTATGGTAACTCTTTCATAGCAGGACCTGCTGGAGAAATTGTTACAGGTGCTAATGATAAAGATGAAGCTGTACTAGTGGCAGAGTTTGATTTGGATATGATCAAATGCAAGAGGCATAGCTGGGGAGTATTCCGTGATCGACGTCCAGATTTATACAAGGTGCTACTGACATTAGATGGCAAGAACACCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0050126 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

302

Amino Acids

33.45

Weight (kDa)

5.94

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	10 - 249	1.7e-52	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27450 AT2G27450 AT2G27450
fragaria_vesca	FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110
malus_domestica	MD03G1147500.v1.1 MD11G1166200.v1.1
prunus_persica	Prupe.6G132000_v2.0.a1 Prupe.6G132000_v2.0.a1
pyrus_communis	pycom03g10140 pycom11g13820
rosa_chinensis	RchiOBHm_Chr5g0045651 RchiOBHm_Chr5g0046351
rosa_laevigata	RLG00000034368
rosa_multiflora	Rmu_sc0001035.1_g000083
rosa_roxburghii	Rroxscaffold_1G00035570
rosa_rugosa	Rorug05G0224000 Rorug05G0224100
rosa_samantha	Rh5AG304900 Rh5BG313600 Rh5CG339900 Rh5DG324300
rosa_wichuraiana	Rw0G020580 Rw5G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	69, 856
Acc36I	ACCTGC	1 cut(s)	745
AccB1I	GGYRCC	1 cut(s)	637
AciI	CCGC	2 cut(s)	87, 658
AclWI	GGATC	2 cut(s)	489, 600
AcsI	RAATTY	1 cut(s)	631
AcyI	GRCGYC	2 cut(s)	66, 853
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	3 cut(s)	93, 511, 572
AgsI	TTSAA	6 cut(s)	117, 155, 290, 412, 433, 521
AhlI	ACTAGT	1 cut(s)	784
AjnI	CCWGG	3 cut(s)	385, 393, 415
AluBI	AGCT	7 cut(s)	41, 107, 148, 282, 509, 779, 831
AluI	AGCT	7 cut(s)	41, 107, 148, 282, 509, 779, 831
Alw26I	GTCTC	2 cut(s)	40, 674
AlwI	GGATC	2 cut(s)	489, 600
AlwNI	CAGNNNCTG	1 cut(s)	737
Ama87I	CYCGRG	2 cut(s)	504, 588
ApeKI	GCWGC	3 cut(s)	107, 213, 500
ApoI	RAATTY	1 cut(s)	631
AspS9I	GGNCC	2 cut(s)	383, 734
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	2 cut(s)	504, 588
AvaII	GGWCC	2 cut(s)	383, 734
AxyI	CCTNAGG	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	637
BbvI	GCAGC	3 cut(s)	94, 225, 512
BccI	CCATC	5 cut(s)	228, 332, 374, 566, 881
BciT130I	CCWGG	3 cut(s)	387, 395, 417
BclI	TGATCA	1 cut(s)	810
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	40, 674
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	1 cut(s)	785
BfmI	CTRYAG	2 cut(s)	211, 642
BfuAI	ACCTGC	1 cut(s)	745
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	3 cut(s)	108, 214, 501
BlsI	GCNGC	3 cut(s)	109, 215, 502
Bme1390I	CCNGG	4 cut(s)	387, 395, 417, 625
Bme18I	GGWCC	2 cut(s)	383, 734
BmeT110I	CYCGRG	2 cut(s)	504, 588
BmgT120I	GGNCC	2 cut(s)	383, 734
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	4 cut(s)	387, 395, 417, 625
BmsI	GCATC	3 cut(s)	228, 322, 659
BpmI	CTGGAG	2 cut(s)	619, 762
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	1 cut(s)	625
BsaHI	GRCGYC	2 cut(s)	66, 853
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 511, 572
Bse1I	ACTGG	2 cut(s)	430, 602
Bse21I	CCTNAGG	1 cut(s)	495
BseBI	CCWGG	3 cut(s)	387, 395, 417
BseDI	CCNNGG	1 cut(s)	624
BseGI	GGATG	3 cut(s)	220, 243, 372
BseLI	CCNNNNNNNGG	3 cut(s)	93, 511, 572
BseMII	CTCAG	3 cut(s)	51, 486, 675
BseNI	ACTGG	2 cut(s)	430, 602
BseXI	GCAGC	3 cut(s)	94, 225, 512
BseYI	CCCAGC	2 cut(s)	477, 831
BsgI	GTGCAG	2 cut(s)	363, 546
BshNI	GGYRCC	1 cut(s)	637
BsiHKCI	CYCGRG	2 cut(s)	504, 588
BsiSI	CCGG	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	3 cut(s)	93, 511, 572
BsmAI	GTCTC	2 cut(s)	40, 674
BsmFI	GGGAC	1 cut(s)	352
Bso31I	GGTCTC	1 cut(s)	40
BsoBI	CYCGRG	2 cut(s)	504, 588
Bsp143I	GATC	6 cut(s)	346, 481, 592, 702, 810, 847
BspACI	CCGC	2 cut(s)	87, 658
BspCNI	CTCAG	3 cut(s)	50, 487, 676
BspLI	GGNNCC	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	215
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	2 cut(s)	489, 600
BspT107I	GGYRCC	1 cut(s)	637
BspTNI	GGTCTC	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	430, 602
BssECI	CCNNGG	1 cut(s)	624
BssMI	GATC	6 cut(s)	346, 481, 592, 702, 810, 847
BssNI	GRCGYC	2 cut(s)	66, 853
Bst2UI	CCWGG	3 cut(s)	387, 395, 417
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	2 cut(s)	66, 853
BstAPI	GCANNNNNTGC	3 cut(s)	302, 341, 737
BstC8I	GCNNGC	3 cut(s)	55, 201, 621
BstDEI	CTNAG	4 cut(s)	37, 233, 495, 684
BstF5I	GGATG	3 cut(s)	220, 243, 372
BstKTI	GATC	6 cut(s)	349, 484, 595, 705, 813, 850
BstMAI	GTCTC	2 cut(s)	40, 674
BstMBI	GATC	6 cut(s)	346, 481, 592, 702, 810, 847
BstMWI	GCNNNNNNNGC	6 cut(s)	205, 302, 341, 506, 610, 737
BstNI	CCWGG	3 cut(s)	387, 395, 417
BstNSI	RCATGY	1 cut(s)	623
BstSCI	CCNGG	4 cut(s)	385, 393, 415, 623
BstSFI	CTRYAG	2 cut(s)	211, 642
BstV1I	GCAGC	3 cut(s)	94, 225, 512
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu36I	CCTNAGG	1 cut(s)	495
BtsCI	GGATG	3 cut(s)	220, 243, 372
BtsIMutI	CAGTG	3 cut(s)	423, 491, 595
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	3 cut(s)	55, 201, 621
CaiI	CAGNNNCTG	1 cut(s)	737
Cfr13I	GGNCC	2 cut(s)	383, 734
Csp6I	GTAC	1 cut(s)	782
CviAII	CATG	2 cut(s)	620, 689
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	4 cut(s)	37, 233, 495, 684
DpnI	GATC	6 cut(s)	348, 483, 594, 704, 812, 849
DpnII	GATC	6 cut(s)	346, 481, 592, 702, 810, 847
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	2 cut(s)	383, 734
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	2 cut(s)	504, 588
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRII	CCWGG	3 cut(s)	385, 393, 415
FaeI	CATG	2 cut(s)	623, 692
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	2 cut(s)	619, 688
FbaI	TGATCA	1 cut(s)	810
Fnu4HI	GCNGC	3 cut(s)	108, 214, 501
FokI	GGATG	3 cut(s)	207, 250, 359
Fsp4HI	GCNGC	3 cut(s)	108, 214, 501
FspBI	CTAG	1 cut(s)	785
GluI	GCNGC	3 cut(s)	108, 214, 501
GsaI	CCCAGC	2 cut(s)	481, 835
GsuI	CTGGAG	2 cut(s)	619, 762
HapII	CCGG	1 cut(s)	624
Hin1I	GRCGYC	2 cut(s)	66, 853
Hin1II	CATG	2 cut(s)	623, 692
HinfI	GANTC	2 cut(s)	429, 584
HpaII	CCGG	1 cut(s)	624
HphI	GGTGA	1 cut(s)	431
Hpy188I	TCNGA	1 cut(s)	562
Hpy188III	TCNNGA	5 cut(s)	442, 494, 569, 590, 857
Hpy99I	CGWCG	5 cut(s)	65, 68, 71, 83, 855
HpyAV	CCTTC	1 cut(s)	149
HpyCH4IV	ACGT	3 cut(s)	66, 78, 853
HpyF10VI	GCNNNNNNNGC	6 cut(s)	205, 302, 341, 506, 610, 737
HpyF3I	CTNAG	4 cut(s)	37, 233, 495, 684
HpySE526I	ACGT	3 cut(s)	66, 78, 853
Hsp92I	GRCGYC	2 cut(s)	66, 853
Hsp92II	CATG	2 cut(s)	623, 692
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	6 cut(s)	346, 481, 592, 702, 810, 847
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	3 cut(s)	94, 225, 512
LweI	GCATC	3 cut(s)	228, 322, 659
MaeI	CTAG	1 cut(s)	785
MaeII	ACGT	3 cut(s)	66, 78, 853
MaeIII	GTNAC	3 cut(s)	419, 716, 751
MalI	GATC	6 cut(s)	348, 483, 594, 704, 812, 849
MboI	GATC	6 cut(s)	346, 481, 592, 702, 810, 847
MboII	GAAGA	2 cut(s)	302, 509
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	6 cut(s)	270, 313, 471, 631, 675, 747
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	9 cut(s)	15, 19, 178, 286, 490, 569, 576, 594, 816
MspI	CCGG	1 cut(s)	624
MspR9I	CCNGG	4 cut(s)	387, 395, 417, 625
MvaI	CCWGG	3 cut(s)	387, 395, 417
MwoI	GCNNNNNNNGC	6 cut(s)	205, 302, 341, 506, 610, 737
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	6 cut(s)	346, 481, 592, 702, 810, 847
NlaIII	CATG	2 cut(s)	623, 692
NlaIV	GGNNCC	1 cut(s)	639
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	623
PaeI	GCATGC	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	3 cut(s)	57, 75, 87
PfeI	GAWTC	2 cut(s)	429, 584
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	109, 215, 502
PpuMI	RGGWCCY	1 cut(s)	734
Psp5II	RGGWCCY	1 cut(s)	734
Psp6I	CCWGG	3 cut(s)	385, 393, 415
PspFI	CCCAGC	2 cut(s)	477, 831
PspGI	CCWGG	3 cut(s)	385, 393, 415
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	2 cut(s)	383, 734
PspPPI	RGGWCCY	1 cut(s)	734
PstI	CTGCAG	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	346
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
SatI	GCNGC	3 cut(s)	108, 214, 501
Sau3AI	GATC	6 cut(s)	346, 481, 592, 702, 810, 847
Sau96I	GGNCC	2 cut(s)	383, 734
ScrFI	CCNGG	4 cut(s)	387, 395, 417, 625
SfaNI	GCATC	3 cut(s)	228, 322, 659
SfcI	CTRYAG	2 cut(s)	211, 642
SinI	GGWCC	2 cut(s)	383, 734
SmlI	CTYRAG	1 cut(s)	567
SmoI	CTYRAG	1 cut(s)	567
SpeI	ACTAGT	1 cut(s)	784
SphI	GCATGC	1 cut(s)	623
Sse9I	AATT	6 cut(s)	270, 313, 471, 631, 675, 747
SsiI	CCGC	2 cut(s)	87, 658
SspMI	CTAG	1 cut(s)	785
StyD4I	CCNGG	4 cut(s)	385, 393, 415, 623
TaiI	ACGT	3 cut(s)	69, 81, 856
TaqI	TCGA	2 cut(s)	317, 850
TasI	AATT	6 cut(s)	270, 313, 471, 631, 675, 747
TatI	WGTACW	1 cut(s)	781
TfiI	GAWTC	2 cut(s)	429, 584
TscAI	CASTG	3 cut(s)	430, 491, 602
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	3 cut(s)	107, 213, 500
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	181, 715, 789
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	3 cut(s)	430, 491, 602
Tth111I	GACNNNGTC	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	383, 734
XapI	RAATTY	1 cut(s)	631
XceI	RCATGY	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	785
ZraI	GACGTC	2 cut(s)	67, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.