Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006306

Physical Location & Seq

Genomic Coordinates Forward (+)

42851558 .. 42855251

Gene Structure 3694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAAAACAAGGGTAAGAGGGAGGTGGTGGTCTCAGCTTTGCAGTTCGCTTGCACCGACGACGTCGCCACCAACGTCGCCACCGCCGAAAGGTTGGTTCGAGCTGCTCATTCAAAGGGTGCAAACATCATTCTTATACAGGAGCTTTTTGAAGGATATTACTTCTGTCAAGCACAAAGGGAGGACTTCATTCAGCGAGCAAAGCCTTACAGCAACCATCCAACTATTCTTAGGATGCAGAAAATTGCAAAAGAGTTGGGTGTGGTAATACCAGTTAGCTTTTTTGAAGAGGCGAACAATGCCCACTACAATTCAATTGCCATTATTGATGCAGATGGTGCCGATCTTGGACTTTATAGAAAGTCCCACATCCCAGATGGACCAGGCTACCAGGAAAAGTTCTACTTCAATCCAGGTGACACTGGATTCAAGGTTTTCCAGACCAAGTTCGCAAAAATAGGAGTTGCAATTTGCTGGGATCAATGGTTTCCTGAGGCAGCCCGAGCTTTGGTTCTTCAAGGTGCAGAGATTTTGTTTTATCCTACTGCTATTGGTTCTGAACCTCAAGATGGAGGACTTGATTCTAGGGATCACTGGAGGCGAGTAATGCAAGGGCATGCTGGGGCGAATTTGGTGCCTGTAGTAACATCAAACCGCATAGGAAAGGAGATAATTGAGACTGAACATGGAAAGAGTGAGATCACATTTTATGGTAACTCTTTCATAGCAGGACCTACTGGAGAAATTGTTACAGCTGCTAATGATAAAGATGAAGCGATCAAATGCAAGAGGCATAGCTGGGGAGTATTCCGTGATCGACGTCCAGAGTTATACAAGGTGCTACTTTCGTTAGATGGCAAGAACACCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0050126 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

290

Amino Acids

32.34

Weight (kDa)

6.46

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	13 - 258	6.8e-51	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27450 AT2G27450 AT2G27450
fragaria_vesca	FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110
malus_domestica	MD03G1147500.v1.1 MD11G1166200.v1.1
prunus_persica	Prupe.6G132000_v2.0.a1 Prupe.6G132000_v2.0.a1
pyrus_communis	pycom03g10140 pycom11g13820
rosa_chinensis	RchiOBHm_Chr5g0045651 RchiOBHm_Chr5g0046351
rosa_laevigata	RLG00000034368
rosa_multiflora	Rmu_sc0001035.1_g000083
rosa_roxburghii	Rroxscaffold_1G00035570
rosa_rugosa	Rorug05G0224000 Rorug05G0224100
rosa_samantha	Rh5AG304900 Rh5BG313600 Rh5CG339900 Rh5DG324300
rosa_wichuraiana	Rw0G020580 Rw5G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	66, 823
AccB1I	GGYRCC	2 cut(s)	338, 634
AciI	CCGC	2 cut(s)	84, 655
AclWI	GGATC	2 cut(s)	486, 597
AcsI	RAATTY	1 cut(s)	628
AcyI	GRCGYC	2 cut(s)	63, 820
AfiI	CCNNNNNNNGG	3 cut(s)	90, 508, 569
AgsI	TTSAA	7 cut(s)	114, 152, 287, 315, 409, 430, 518
AjnI	CCWGG	3 cut(s)	382, 390, 412
AluBI	AGCT	7 cut(s)	38, 104, 145, 279, 506, 755, 798
AluI	AGCT	7 cut(s)	38, 104, 145, 279, 506, 755, 798
Alw26I	GTCTC	2 cut(s)	37, 671
AlwI	GGATC	2 cut(s)	486, 597
Ama87I	CYCGRG	1 cut(s)	501
ApeKI	GCWGC	3 cut(s)	104, 497, 755
ApoI	RAATTY	1 cut(s)	628
AspS9I	GGNCC	2 cut(s)	380, 731
AsuHPI	GGTGA	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	501
AvaII	GGWCC	2 cut(s)	380, 731
AxyI	CCTNAGG	1 cut(s)	492
BanI	GGYRCC	2 cut(s)	338, 634
BbvI	GCAGC	3 cut(s)	91, 509, 742
BccI	CCATC	5 cut(s)	225, 329, 371, 563, 848
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciT130I	CCWGG	3 cut(s)	384, 392, 414
BcoDI	GTCTC	2 cut(s)	37, 671
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	639
BisI	GCNGC	3 cut(s)	105, 498, 756
BlsI	GCNGC	3 cut(s)	106, 499, 757
Bme1390I	CCNGG	3 cut(s)	384, 392, 414
Bme18I	GGWCC	2 cut(s)	380, 731
BmeT110I	CYCGRG	1 cut(s)	501
BmgT120I	GGNCC	2 cut(s)	380, 731
BmiI	GGNNCC	2 cut(s)	340, 636
BmrFI	CCNGG	3 cut(s)	384, 392, 414
BmsI	GCATC	2 cut(s)	225, 319
BpmI	CTGGAG	2 cut(s)	616, 759
BpuEI	CTTGAG	1 cut(s)	549
BsaHI	GRCGYC	2 cut(s)	63, 820
BsaI	GGTCTC	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 508, 569
Bse1I	ACTGG	4 cut(s)	272, 427, 599, 742
Bse21I	CCTNAGG	1 cut(s)	492
BseBI	CCWGG	3 cut(s)	384, 392, 414
BseGI	GGATG	3 cut(s)	217, 240, 369
BseLI	CCNNNNNNNGG	3 cut(s)	90, 508, 569
BseMII	CTCAG	2 cut(s)	48, 483
BseNI	ACTGG	4 cut(s)	272, 427, 599, 742
BseXI	GCAGC	3 cut(s)	91, 509, 742
BseYI	CCCAGC	3 cut(s)	474, 620, 798
BsgI	GTGCAG	1 cut(s)	543
BshNI	GGYRCC	2 cut(s)	338, 634
BsiHKCI	CYCGRG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	3 cut(s)	90, 508, 569
BsmAI	GTCTC	2 cut(s)	37, 671
BsmFI	GGGAC	1 cut(s)	349
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	501
Bsp143I	GATC	6 cut(s)	343, 478, 589, 699, 777, 814
BspACI	CCGC	2 cut(s)	84, 655
BspCNI	CTCAG	2 cut(s)	47, 484
BspLI	GGNNCC	2 cut(s)	340, 636
BspPI	GGATC	2 cut(s)	486, 597
BspT107I	GGYRCC	2 cut(s)	338, 634
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	4 cut(s)	272, 427, 599, 742
BssMI	GATC	6 cut(s)	343, 478, 589, 699, 777, 814
BssNI	GRCGYC	2 cut(s)	63, 820
Bst2UI	CCWGG	3 cut(s)	384, 392, 414
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	2 cut(s)	63, 820
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	52, 198, 618
BstDEI	CTNAG	3 cut(s)	34, 230, 492
BstF5I	GGATG	3 cut(s)	217, 240, 369
BstKTI	GATC	6 cut(s)	346, 481, 592, 702, 780, 817
BstMAI	GTCTC	2 cut(s)	37, 671
BstMBI	GATC	6 cut(s)	343, 478, 589, 699, 777, 814
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 299, 338, 503, 607
BstNI	CCWGG	3 cut(s)	384, 392, 414
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	3 cut(s)	382, 390, 412
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	3 cut(s)	91, 509, 742
Bsu36I	CCTNAGG	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	217, 240, 369
BtsIMutI	CAGTG	2 cut(s)	420, 592
Cac8I	GCNNGC	3 cut(s)	52, 198, 618
Cfr13I	GGNCC	2 cut(s)	380, 731
CviAII	CATG	2 cut(s)	617, 686
DdeI	CTNAG	3 cut(s)	34, 230, 492
DpnI	GATC	6 cut(s)	345, 480, 591, 701, 779, 816
DpnII	GATC	6 cut(s)	343, 478, 589, 699, 777, 814
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	380, 731
Eco81I	CCTNAGG	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	501
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRII	CCWGG	3 cut(s)	382, 390, 412
FaeI	CATG	2 cut(s)	620, 689
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	616, 685
Fnu4HI	GCNGC	3 cut(s)	105, 498, 756
FokI	GGATG	3 cut(s)	204, 247, 356
Fsp4HI	GCNGC	3 cut(s)	105, 498, 756
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	3 cut(s)	105, 498, 756
GsaI	CCCAGC	3 cut(s)	478, 624, 802
GsuI	CTGGAG	2 cut(s)	616, 759
Hin1I	GRCGYC	2 cut(s)	63, 820
Hin1II	CATG	2 cut(s)	620, 689
HinfI	GANTC	2 cut(s)	426, 581
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	1 cut(s)	559
Hpy188III	TCNNGA	4 cut(s)	439, 491, 566, 824
Hpy99I	CGWCG	5 cut(s)	62, 65, 68, 80, 822
HpyAV	CCTTC	1 cut(s)	146
HpyCH4IV	ACGT	3 cut(s)	63, 75, 820
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 299, 338, 503, 607
HpyF3I	CTNAG	3 cut(s)	34, 230, 492
HpySE526I	ACGT	3 cut(s)	63, 75, 820
Hsp92I	GRCGYC	2 cut(s)	63, 820
Hsp92II	CATG	2 cut(s)	620, 689
Kzo9I	GATC	6 cut(s)	343, 478, 589, 699, 777, 814
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	3 cut(s)	91, 509, 742
LweI	GCATC	2 cut(s)	225, 319
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	3 cut(s)	63, 75, 820
MaeIII	GTNAC	4 cut(s)	416, 643, 713, 748
MalI	GATC	6 cut(s)	345, 480, 591, 701, 779, 816
MboI	GATC	6 cut(s)	343, 478, 589, 699, 777, 814
MboII	GAAGA	2 cut(s)	299, 506
MfeI	CAATTG	1 cut(s)	315
MluCI	AATT	7 cut(s)	243, 310, 315, 468, 628, 672, 744
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	9 cut(s)	12, 16, 175, 283, 487, 566, 573, 591, 783
MspA1I	CMGCKG	1 cut(s)	755
MspR9I	CCNGG	3 cut(s)	384, 392, 414
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	3 cut(s)	384, 392, 414
MwoI	GCNNNNNNNGC	5 cut(s)	202, 299, 338, 503, 607
NdeII	GATC	6 cut(s)	343, 478, 589, 699, 777, 814
NlaIII	CATG	2 cut(s)	620, 689
NlaIV	GGNNCC	2 cut(s)	340, 636
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	620
PaeI	GCATGC	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 72, 84
PfeI	GAWTC	2 cut(s)	426, 581
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	106, 499, 757
PpuMI	RGGWCCY	1 cut(s)	731
Psp5II	RGGWCCY	1 cut(s)	731
Psp6I	CCWGG	3 cut(s)	382, 390, 412
PspFI	CCCAGC	3 cut(s)	474, 620, 798
PspGI	CCWGG	3 cut(s)	382, 390, 412
PspN4I	GGNNCC	2 cut(s)	340, 636
PspPI	GGNCC	2 cut(s)	380, 731
PspPPI	RGGWCCY	1 cut(s)	731
PsyI	GACNNNGTC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	755
SatI	GCNGC	3 cut(s)	105, 498, 756
Sau3AI	GATC	6 cut(s)	343, 478, 589, 699, 777, 814
Sau96I	GGNCC	2 cut(s)	380, 731
ScrFI	CCNGG	3 cut(s)	384, 392, 414
SfaNI	GCATC	2 cut(s)	225, 319
SfcI	CTRYAG	1 cut(s)	639
SinI	GGWCC	2 cut(s)	380, 731
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	7 cut(s)	243, 310, 315, 468, 628, 672, 744
SsiI	CCGC	2 cut(s)	84, 655
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	3 cut(s)	382, 390, 412
TaiI	ACGT	3 cut(s)	66, 78, 823
TaqI	TCGA	2 cut(s)	100, 817
TasI	AATT	7 cut(s)	243, 310, 315, 468, 628, 672, 744
TfiI	GAWTC	2 cut(s)	426, 581
TscAI	CASTG	2 cut(s)	427, 599
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	104, 497, 755
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	178, 712, 786
TspGWI	ACGGA	1 cut(s)	800
TspRI	CASTG	2 cut(s)	427, 599
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	380, 731
XapI	RAATTY	1 cut(s)	628
XceI	RCATGY	1 cut(s)	620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	1 cut(s)	585
ZraI	GACGTC	2 cut(s)	64, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.