Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006306

Physical Location & Seq

Genomic Coordinates Forward (+)

10393471 .. 10398591

Gene Structure 5121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G132000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAGAAGGATAAAAGGGAGGTGATGGTCTCAGCTTTGCAATTCGCTTGCACCGATGACGTCGCCACTAACGTTGCAACTGCAGAAAGGTTGGTTAGAGCTGCTCATGCAAAGGGTGCAAACATCATTCTTATACAGGAACTTTTTGAGGGACATTACTTCTGTCAGGCGCAAAGGGAGGACTTCTTTCAGCGAGCAAAGCCTTACAAAGATCATCCAACAATTCTTAGGATGCAAAAAATTGCAAAAGAGTTGGGTGTGGTAATACCAGTTAGCTTCTTTGAAGAGGCAAATAATGCCCATTACAACTCAATTGCCATTATTGATGCTGATGGGGCAGATCTTGGACTTTATAGGAAATCCCACATCCCAGACGGACCAGGCTACCAGGAAAAGTTCTACTTCAATCCAGGTGACACTGGATTCAAGGTTTTCAAGACCAAGTTCGCCACAATTGGAGTTGCAATTTGCTGGGATCAGTGGTTTCCTGAGGCAGCCCGATCTTTGGTTCTTCAAGGTGCAGATATATTGTTTTACCCTACTGCTATTGGTTCTGAACCTCAAGATGGAGGACTTGATTCTAGGGATCACTGGAGGCGAGTAATGCAAGGGCATGCTGGGGCTAATGTGGTCCCTGTAGTAACTTCAAATCGCATAGGGAAAGAGGTAATTGAGACTGAGCATGGAAAGAGTGAGATCACATTTTACGGTAACTCTTTCATTGCAGGACCCACTGGAGAAATTGTTGCAACTGCTAATGATAAAGAGGAAGCTGTACTAGTAGCACAATTTGACCTGGACAAAATCAAATGGAAGAGACATAGTTGGGGAGTATTCCGTGATCGACGCCCAGATTTATACAAGGTGCTACTGACATCAGATGGCAGCAATTCCCCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0050126 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

301

Amino Acids

33.55

Weight (kDa)

6.01

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27450 AT2G27450 AT2G27450
fragaria_vesca	FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110
malus_domestica	MD03G1147500.v1.1 MD11G1166200.v1.1
prunus_persica	Prupe.6G132000_v2.0.a1 Prupe.6G132000_v2.0.a1
pyrus_communis	pycom03g10140 pycom11g13820
rosa_chinensis	RchiOBHm_Chr5g0045651 RchiOBHm_Chr5g0046351
rosa_laevigata	RLG00000034368
rosa_multiflora	Rmu_sc0001035.1_g000083
rosa_roxburghii	Rroxscaffold_1G00035570
rosa_rugosa	Rorug05G0224000 Rorug05G0224100
rosa_samantha	Rh5AG304900 Rh5BG313600 Rh5CG339900 Rh5DG324300
rosa_wichuraiana	Rw0G020580 Rw5G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	2 cut(s)	483, 594
AcyI	GRCGYC	2 cut(s)	60, 847
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	2 cut(s)	505, 566
AgsI	TTSAA	6 cut(s)	284, 406, 427, 436, 515, 648
AhlI	ACTAGT	1 cut(s)	778
AjnI	CCWGG	4 cut(s)	379, 387, 409, 795
AluBI	AGCT	4 cut(s)	35, 101, 276, 773
AluI	AGCT	4 cut(s)	35, 101, 276, 773
Alw26I	GTCTC	3 cut(s)	34, 668, 811
AlwI	GGATC	2 cut(s)	483, 594
ApeKI	GCWGC	3 cut(s)	101, 494, 885
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	3 cut(s)	377, 631, 728
AsuHPI	GGTGA	2 cut(s)	34, 425
AvaII	GGWCC	3 cut(s)	377, 631, 728
AxyI	CCTNAGG	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	88, 506, 897
BccI	CCATC	4 cut(s)	19, 326, 560, 875
BciT130I	CCWGG	4 cut(s)	381, 389, 411, 797
BcoDI	GTCTC	3 cut(s)	34, 668, 811
BcuI	ACTAGT	1 cut(s)	778
BfaI	CTAG	2 cut(s)	582, 779
BfmI	CTRYAG	2 cut(s)	81, 636
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	102, 495, 886
BlsI	GCNGC	3 cut(s)	103, 496, 887
Bme1390I	CCNGG	4 cut(s)	381, 389, 411, 797
Bme18I	GGWCC	3 cut(s)	377, 631, 728
BmgT120I	GGNCC	3 cut(s)	377, 631, 728
BmiI	GGNNCC	2 cut(s)	633, 730
BmrFI	CCNGG	4 cut(s)	381, 389, 411, 797
BmsI	GCATC	2 cut(s)	222, 316
BpmI	CTGGAG	2 cut(s)	613, 756
BpuEI	CTTGAG	1 cut(s)	546
BsaHI	GRCGYC	2 cut(s)	60, 847
BsaI	GGTCTC	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	729, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 566
Bse1I	ACTGG	4 cut(s)	269, 424, 596, 739
Bse21I	CCTNAGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	720
BseBI	CCWGG	4 cut(s)	381, 389, 411, 797
BseGI	GGATG	3 cut(s)	214, 237, 366
BseLI	CCNNNNNNNGG	2 cut(s)	505, 566
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	3 cut(s)	45, 480, 669
BseNI	ACTGG	4 cut(s)	269, 424, 596, 739
BseXI	GCAGC	3 cut(s)	88, 506, 897
BseYI	CCCAGC	2 cut(s)	471, 617
BsgI	GTGCAG	1 cut(s)	540
BslFI	GGGAC	2 cut(s)	165, 617
BslI	CCNNNNNNNGG	2 cut(s)	505, 566
BsmAI	GTCTC	3 cut(s)	34, 668, 811
BsmFI	GGGAC	2 cut(s)	165, 617
Bso31I	GGTCTC	1 cut(s)	34
Bsp143I	GATC	7 cut(s)	211, 340, 475, 500, 586, 696, 841
BspCNI	CTCAG	3 cut(s)	44, 481, 670
BspLI	GGNNCC	2 cut(s)	633, 730
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	2 cut(s)	483, 594
BspTNI	GGTCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	4 cut(s)	269, 424, 596, 739
BssMI	GATC	7 cut(s)	211, 340, 475, 500, 586, 696, 841
BssNI	GRCGYC	2 cut(s)	60, 847
Bst2UI	CCWGG	4 cut(s)	381, 389, 411, 797
Bst4CI	ACNGT	1 cut(s)	710
Bst6I	CTCTTC	2 cut(s)	279, 809
BstACI	GRCGYC	2 cut(s)	60, 847
BstAPI	GCANNNNNTGC	2 cut(s)	116, 296
BstC8I	GCNNGC	3 cut(s)	49, 195, 615
BstDEI	CTNAG	4 cut(s)	31, 227, 489, 678
BstF5I	GGATG	3 cut(s)	214, 237, 366
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	7 cut(s)	214, 343, 478, 503, 589, 699, 844
BstMAI	GTCTC	3 cut(s)	34, 668, 811
BstMBI	GATC	7 cut(s)	211, 340, 475, 500, 586, 696, 841
BstMWI	GCNNNNNNNGC	6 cut(s)	107, 116, 199, 296, 335, 604
BstNI	CCWGG	4 cut(s)	381, 389, 411, 797
BstNSI	RCATGY	1 cut(s)	617
BstSCI	CCNGG	4 cut(s)	379, 387, 409, 795
BstSFI	CTRYAG	2 cut(s)	81, 636
BstV1I	GCAGC	3 cut(s)	88, 506, 897
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	214, 237, 366
BtsIMutI	CAGTG	4 cut(s)	417, 485, 589, 732
Cac8I	GCNNGC	3 cut(s)	49, 195, 615
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	3 cut(s)	377, 631, 728
CseI	GACGC	1 cut(s)	855
Csp6I	GTAC	1 cut(s)	776
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	3 cut(s)	107, 614, 683
CviJI	RGCY	8 cut(s)	35, 101, 202, 276, 384, 497, 623, 773
CviKI_1	RGCY	8 cut(s)	35, 101, 202, 276, 384, 497, 623, 773
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	4 cut(s)	31, 227, 489, 678
DpnI	GATC	7 cut(s)	213, 342, 477, 502, 588, 698, 843
DpnII	GATC	7 cut(s)	211, 340, 475, 500, 586, 696, 841
Eam1104I	CTCTTC	2 cut(s)	279, 809
EarI	CTCTTC	2 cut(s)	279, 809
Eco31I	GGTCTC	1 cut(s)	34
Eco47I	GGWCC	3 cut(s)	377, 631, 728
Eco81I	CCTNAGG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRII	CCWGG	4 cut(s)	379, 387, 409, 795
FaeI	CATG	3 cut(s)	110, 617, 686
FaiI	YATR	9 cut(s)	108, 134, 354, 527, 615, 656, 684, 822, 859
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FaqI	GGGAC	2 cut(s)	165, 617
FatI	CATG	3 cut(s)	106, 613, 682
Fnu4HI	GCNGC	3 cut(s)	102, 495, 886
FokI	GGATG	3 cut(s)	201, 244, 353
Fsp4HI	GCNGC	3 cut(s)	102, 495, 886
FspBI	CTAG	2 cut(s)	582, 779
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	3 cut(s)	102, 495, 886
GsaI	CCCAGC	2 cut(s)	475, 621
GsuI	CTGGAG	2 cut(s)	613, 756
HgaI	GACGC	1 cut(s)	855
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	2 cut(s)	60, 847
Hin1II	CATG	3 cut(s)	110, 617, 686
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	423, 578
HphI	GGTGA	2 cut(s)	34, 425
Hpy188I	TCNGA	2 cut(s)	556, 880
Hpy188III	TCNNGA	3 cut(s)	436, 488, 563
Hpy99I	CGWCG	2 cut(s)	65, 849
HpyCH4III	ACNGT	1 cut(s)	710
HpyCH4IV	ACGT	2 cut(s)	60, 72
HpyF10VI	GCNNNNNNNGC	6 cut(s)	107, 116, 199, 296, 335, 604
HpyF3I	CTNAG	4 cut(s)	31, 227, 489, 678
HpySE526I	ACGT	2 cut(s)	60, 72
Hsp92I	GRCGYC	2 cut(s)	60, 847
Hsp92II	CATG	3 cut(s)	110, 617, 686
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	7 cut(s)	211, 340, 475, 500, 586, 696, 841
Lsp1109I	GCAGC	3 cut(s)	88, 506, 897
LweI	GCATC	2 cut(s)	222, 316
MaeI	CTAG	2 cut(s)	582, 779
MaeII	ACGT	2 cut(s)	60, 72
MaeIII	GTNAC	3 cut(s)	413, 640, 710
MalI	GATC	7 cut(s)	213, 342, 477, 502, 588, 698, 843
MboI	GATC	7 cut(s)	211, 340, 475, 500, 586, 696, 841
MboII	GAAGA	3 cut(s)	296, 503, 826
MfeI	CAATTG	2 cut(s)	312, 453
MflI	RGATCY	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	242
MspR9I	CCNGG	4 cut(s)	381, 389, 411, 797
MunI	CAATTG	2 cut(s)	312, 453
MvaI	CCWGG	4 cut(s)	381, 389, 411, 797
MwoI	GCNNNNNNNGC	6 cut(s)	107, 116, 199, 296, 335, 604
NdeII	GATC	7 cut(s)	211, 340, 475, 500, 586, 696, 841
NlaIII	CATG	3 cut(s)	110, 617, 686
NlaIV	GGNNCC	2 cut(s)	633, 730
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	617
PaeI	GCATGC	1 cut(s)	617
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 69
PfeI	GAWTC	2 cut(s)	423, 578
PkrI	GCNGC	3 cut(s)	103, 496, 887
PpuMI	RGGWCCY	1 cut(s)	728
Psp1406I	AACGTT	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	728
Psp6I	CCWGG	4 cut(s)	379, 387, 409, 795
PspFI	CCCAGC	2 cut(s)	471, 617
PspGI	CCWGG	4 cut(s)	379, 387, 409, 795
PspN4I	GGNNCC	2 cut(s)	633, 730
PspPI	GGNCC	3 cut(s)	377, 631, 728
PspPPI	RGGWCCY	1 cut(s)	728
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
SatI	GCNGC	3 cut(s)	102, 495, 886
Sau3AI	GATC	7 cut(s)	211, 340, 475, 500, 586, 696, 841
Sau96I	GGNCC	3 cut(s)	377, 631, 728
ScrFI	CCNGG	4 cut(s)	381, 389, 411, 797
SfaNI	GCATC	2 cut(s)	222, 316
SfcI	CTRYAG	2 cut(s)	81, 636
SinI	GGWCC	3 cut(s)	377, 631, 728
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
SpeI	ACTAGT	1 cut(s)	778
SphI	GCATGC	1 cut(s)	617
SspMI	CTAG	2 cut(s)	582, 779
StyD4I	CCNGG	4 cut(s)	379, 387, 409, 795
TaaI	ACNGT	1 cut(s)	710
TaiI	ACGT	2 cut(s)	63, 75
TaqI	TCGA	1 cut(s)	844
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	2 cut(s)	423, 578
TscAI	CASTG	4 cut(s)	424, 485, 596, 739
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	3 cut(s)	101, 494, 885
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	709
TspGWI	ACGGA	2 cut(s)	390, 827
TspRI	CASTG	4 cut(s)	424, 485, 596, 739
VpaK11BI	GGWCC	3 cut(s)	377, 631, 728
XceI	RCATGY	1 cut(s)	617
XspI	CTAG	2 cut(s)	582, 779
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.