Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006306

Physical Location & Seq

Genomic Coordinates Reverse (-)

42376933 .. 42382045

Gene Structure 5113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32435

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAAAACAAGGGTAAGAGGGAGGTGGTGGTCTCCGCTTTGCAGTTCGCTTGCACCGACGACGTCGCCACCAACGTCGCCACCGCCGAAAGGTTGGTTAGAGCTGCTCATTCAAAGGGTGCAAACATCATTCTTATACAGGAGCTTTTTGAAGGATATTACTTCTGTCAAGCACAAAGGGAGGACTTCATTCAGCGAGCAAAGCCTTACAGCAACCATCCAACTATTCTTAGGATGCAGAAACTTGCAAAAGAGTTGGGTGTGGTAATACCAGTTAGCTTTTTTGAAGAGGCGAACAATGCCCACTACAATTCAATTGCCATTATTGATGCAGACGGTGCCGATCTTGGGCTTTATAGAAAGTCCCACATCCCAGATGGACCAGGAAAGTTCTACTTCAATCCAGGTGACACTGGATTCAAGGTTTTCCAGACCAAGTTCGCAAAAATAGGAGTTGCAATTTGCTGGGATCAATGGTTTCCTGAGGCAGCCCGAGCTTTGGTTCTTCAAGGTGCAGAGATTTTGTTTTATCCTACTGCTATTGGTTCTGAACCTCAAGATGGAGGACTTGATTCTAGGGATCACTGGAGGCGAGTAATGCAAGGGCATGCTGGGGCGAATTTGGTGCCTGTAGTAACATCAAACCGCATAGGAAAGGAGATAATTGAGACTGAGCATGGAAAGAGTGAGATCACATTTTATGGTAACTCTTTCATAGCAGGACCTACTGGAGAAATTGTTACAGCTGCTAATGATAAAGATGAAGCGGTACTAGTGGCAGAATTTGATTTGGATAAGATCAAATGCAAGAGGCATAGCTGGGGAGTATTCCGTGATCGACGTCCAGAGTTATACAAGCTGAGTAACTGTGATGATACTCAGTATGGATGGACGAGGTCTTCTGAAGCACTAGAGCCCCAGACGTGGACTCATTTCGTCCAGATTAATGCGTTGCCCAAAGTCAAGTTTTTTCTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0050126 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

326

Amino Acids

36.62

Weight (kDa)

6.33

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	13 - 267	3.4e-51	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27450 AT2G27450 AT2G27450
fragaria_vesca	FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110
malus_domestica	MD03G1147500.v1.1 MD11G1166200.v1.1
prunus_persica	Prupe.6G132000_v2.0.a1 Prupe.6G132000_v2.0.a1
pyrus_communis	pycom03g10140 pycom11g13820
rosa_chinensis	RchiOBHm_Chr5g0045651 RchiOBHm_Chr5g0046351
rosa_laevigata	RLG00000034368
rosa_multiflora	Rmu_sc0001035.1_g000083
rosa_roxburghii	Rroxscaffold_1G00035570
rosa_rugosa	Rorug05G0224000 Rorug05G0224100
rosa_samantha	Rh5AG304900 Rh5BG313600 Rh5CG339900 Rh5DG324300
rosa_wichuraiana	Rw0G020580 Rw5G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	66, 844
AccB1I	GGYRCC	2 cut(s)	338, 625
AciI	CCGC	4 cut(s)	36, 84, 646, 767
AclWI	GGATC	2 cut(s)	477, 588
AcsI	RAATTY	2 cut(s)	619, 782
AcuI	CTGAAG	1 cut(s)	924
AcyI	GRCGYC	2 cut(s)	63, 841
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	5 cut(s)	90, 348, 499, 560, 924
AgsI	TTSAA	7 cut(s)	114, 152, 287, 315, 400, 421, 509
AhlI	ACTAGT	1 cut(s)	772
AjiI	CACGTC	1 cut(s)	924
AjnI	CCWGG	2 cut(s)	382, 403
AluBI	AGCT	7 cut(s)	104, 145, 279, 497, 746, 819, 859
AluI	AGCT	7 cut(s)	104, 145, 279, 497, 746, 819, 859
Alw26I	GTCTC	2 cut(s)	37, 662
AlwI	GGATC	2 cut(s)	477, 588
Ama87I	CYCGRG	1 cut(s)	492
ApeKI	GCWGC	3 cut(s)	104, 488, 746
ApoI	RAATTY	2 cut(s)	619, 782
AseI	ATTAAT	1 cut(s)	945
AspS9I	GGNCC	2 cut(s)	380, 722
AsuHPI	GGTGA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	2 cut(s)	380, 722
AxyI	CCTNAGG	1 cut(s)	483
BanI	GGYRCC	2 cut(s)	338, 625
BanII	GRGCYC	1 cut(s)	918
BbsI	GAAGAC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	91, 500, 733
BccI	CCATC	4 cut(s)	225, 371, 554, 882
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciT130I	CCWGG	2 cut(s)	384, 405
BcoDI	GTCTC	2 cut(s)	37, 662
BcuI	ACTAGT	1 cut(s)	772
BfaI	CTAG	3 cut(s)	576, 773, 911
BfmI	CTRYAG	1 cut(s)	630
BisI	GCNGC	3 cut(s)	105, 489, 747
BlsI	GCNGC	3 cut(s)	106, 490, 748
Bme1390I	CCNGG	2 cut(s)	384, 405
Bme18I	GGWCC	2 cut(s)	380, 722
BmeT110I	CYCGRG	1 cut(s)	492
BmgBI	CACGTC	1 cut(s)	924
BmgT120I	GGNCC	2 cut(s)	380, 722
BmiI	GGNNCC	2 cut(s)	340, 627
BmrFI	CCNGG	2 cut(s)	384, 405
BmsI	GCATC	2 cut(s)	225, 319
BpiI	GAAGAC	1 cut(s)	891
BpmI	CTGGAG	2 cut(s)	607, 750
BpuEI	CTTGAG	1 cut(s)	540
BsaHI	GRCGYC	2 cut(s)	63, 841
BsaI	GGTCTC	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	5 cut(s)	90, 348, 499, 560, 924
Bse1I	ACTGG	4 cut(s)	272, 418, 590, 733
Bse21I	CCTNAGG	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	384, 405
BseGI	GGATG	4 cut(s)	217, 240, 369, 893
BseLI	CCNNNNNNNGG	5 cut(s)	90, 348, 499, 560, 924
BseMII	CTCAG	4 cut(s)	474, 663, 851, 893
BseNI	ACTGG	4 cut(s)	272, 418, 590, 733
BseXI	GCAGC	3 cut(s)	91, 500, 733
BseYI	CCCAGC	3 cut(s)	465, 611, 819
BsgI	GTGCAG	1 cut(s)	534
BshNI	GGYRCC	2 cut(s)	338, 625
BsiHKCI	CYCGRG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	5 cut(s)	90, 348, 499, 560, 924
BsmAI	GTCTC	2 cut(s)	37, 662
BsmFI	GGGAC	1 cut(s)	349
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	918
Bsp143I	GATC	6 cut(s)	343, 469, 580, 690, 798, 835
BspACI	CCGC	4 cut(s)	36, 84, 646, 767
BspCNI	CTCAG	4 cut(s)	475, 664, 852, 892
BspLI	GGNNCC	2 cut(s)	340, 627
BspPI	GGATC	2 cut(s)	477, 588
BspT107I	GGYRCC	2 cut(s)	338, 625
BspTNI	GGTCTC	1 cut(s)	37
BsrI	ACTGG	4 cut(s)	272, 418, 590, 733
BssMI	GATC	6 cut(s)	343, 469, 580, 690, 798, 835
BssNI	GRCGYC	2 cut(s)	63, 841
Bst2UI	CCWGG	2 cut(s)	384, 405
Bst4CI	ACNGT	2 cut(s)	338, 869
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	2 cut(s)	63, 841
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	52, 198, 609
BstDEI	CTNAG	6 cut(s)	230, 483, 672, 860, 879, 974
BstF5I	GGATG	4 cut(s)	217, 240, 369, 893
BstKTI	GATC	6 cut(s)	346, 472, 583, 693, 801, 838
BstMAI	GTCTC	2 cut(s)	37, 662
BstMBI	GATC	6 cut(s)	343, 469, 580, 690, 798, 835
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 299, 338, 494, 598
BstNI	CCWGG	2 cut(s)	384, 405
BstNSI	RCATGY	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	382, 403
BstSFI	CTRYAG	1 cut(s)	630
BstV1I	GCAGC	3 cut(s)	91, 500, 733
BstV2I	GAAGAC	1 cut(s)	891
Bsu36I	CCTNAGG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	924
BtsCI	GGATG	4 cut(s)	217, 240, 369, 893
BtsIMutI	CAGTG	2 cut(s)	411, 583
Cac8I	GCNNGC	3 cut(s)	52, 198, 609
Cfr13I	GGNCC	2 cut(s)	380, 722
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	2 cut(s)	608, 677
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	6 cut(s)	230, 483, 672, 860, 879, 974
DpnI	GATC	6 cut(s)	345, 471, 582, 692, 800, 837
DpnII	GATC	6 cut(s)	343, 469, 580, 690, 798, 835
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	918
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	380, 722
Eco57I	CTGAAG	1 cut(s)	924
Eco81I	CCTNAGG	1 cut(s)	483
Eco88I	CYCGRG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	722
EcoRII	CCWGG	2 cut(s)	382, 403
EcoT38I	GRGCYC	1 cut(s)	918
FaeI	CATG	2 cut(s)	611, 680
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	607, 676
Fnu4HI	GCNGC	3 cut(s)	105, 489, 747
FokI	GGATG	4 cut(s)	204, 247, 356, 900
FriOI	GRGCYC	1 cut(s)	918
Fsp4HI	GCNGC	3 cut(s)	105, 489, 747
FspBI	CTAG	3 cut(s)	576, 773, 911
GluI	GCNGC	3 cut(s)	105, 489, 747
GsaI	CCCAGC	3 cut(s)	469, 615, 823
GsuI	CTGGAG	2 cut(s)	607, 750
Hin1I	GRCGYC	2 cut(s)	63, 841
Hin1II	CATG	2 cut(s)	611, 680
HinfI	GANTC	3 cut(s)	417, 572, 928
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	927
Hpy188I	TCNGA	2 cut(s)	550, 904
Hpy188III	TCNNGA	5 cut(s)	430, 482, 557, 845, 940
Hpy8I	GTNNAC	1 cut(s)	927
Hpy99I	CGWCG	5 cut(s)	62, 65, 68, 80, 843
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	338, 869
HpyCH4IV	ACGT	4 cut(s)	63, 75, 841, 923
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 299, 338, 494, 598
HpyF3I	CTNAG	6 cut(s)	230, 483, 672, 860, 879, 974
HpySE526I	ACGT	4 cut(s)	63, 75, 841, 923
Hsp92I	GRCGYC	2 cut(s)	63, 841
Hsp92II	CATG	2 cut(s)	611, 680
Kzo9I	GATC	6 cut(s)	343, 469, 580, 690, 798, 835
LmnI	GCTCC	1 cut(s)	142
Lsp1109I	GCAGC	3 cut(s)	91, 500, 733
LweI	GCATC	2 cut(s)	225, 319
MaeI	CTAG	3 cut(s)	576, 773, 911
MaeII	ACGT	4 cut(s)	63, 75, 841, 923
MaeIII	GTNAC	5 cut(s)	407, 634, 704, 739, 863
MalI	GATC	6 cut(s)	345, 471, 582, 692, 800, 837
MboI	GATC	6 cut(s)	343, 469, 580, 690, 798, 835
MboII	GAAGA	3 cut(s)	299, 497, 891
MfeI	CAATTG	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	918
MluCI	AATT	7 cut(s)	310, 315, 459, 619, 663, 735, 782
MlyI	GAGTC	1 cut(s)	922
MmeI	TCCRAC	1 cut(s)	245
MseI	TTAA	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	746
MspR9I	CCNGG	2 cut(s)	384, 405
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	384, 405
MwoI	GCNNNNNNNGC	5 cut(s)	202, 299, 338, 494, 598
NdeII	GATC	6 cut(s)	343, 469, 580, 690, 798, 835
NlaIII	CATG	2 cut(s)	611, 680
NlaIV	GGNNCC	2 cut(s)	340, 627
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	1 cut(s)	611
PaeI	GCATGC	1 cut(s)	611
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 72, 84
PfeI	GAWTC	2 cut(s)	417, 572
PflFI	GACNNNGTC	2 cut(s)	62, 895
PkrI	GCNGC	3 cut(s)	106, 490, 748
PleI	GAGTC	1 cut(s)	922
PpsI	GAGTC	1 cut(s)	922
PpuMI	RGGWCCY	1 cut(s)	722
PshBI	ATTAAT	1 cut(s)	945
Psp5II	RGGWCCY	1 cut(s)	722
Psp6I	CCWGG	2 cut(s)	382, 403
PspFI	CCCAGC	3 cut(s)	465, 611, 819
PspGI	CCWGG	2 cut(s)	382, 403
PspN4I	GGNNCC	2 cut(s)	340, 627
PspPI	GGNCC	2 cut(s)	380, 722
PspPPI	RGGWCCY	1 cut(s)	722
PsyI	GACNNNGTC	2 cut(s)	62, 895
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
SaqAI	TTAA	1 cut(s)	945
SatI	GCNGC	3 cut(s)	105, 489, 747
Sau3AI	GATC	6 cut(s)	343, 469, 580, 690, 798, 835
Sau96I	GGNCC	2 cut(s)	380, 722
SchI	GAGTC	1 cut(s)	922
ScrFI	CCNGG	2 cut(s)	384, 405
SduI	GDGCHC	1 cut(s)	918
SfaNI	GCATC	2 cut(s)	225, 319
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	2 cut(s)	380, 722
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
SpeI	ACTAGT	1 cut(s)	772
SphI	GCATGC	1 cut(s)	611
Sse9I	AATT	7 cut(s)	310, 315, 459, 619, 663, 735, 782
SsiI	CCGC	4 cut(s)	36, 84, 646, 767
SspMI	CTAG	3 cut(s)	576, 773, 911
StyD4I	CCNGG	2 cut(s)	382, 403
TaaI	ACNGT	2 cut(s)	338, 869
TaiI	ACGT	4 cut(s)	66, 78, 844, 926
TaqI	TCGA	1 cut(s)	838
TasI	AATT	7 cut(s)	310, 315, 459, 619, 663, 735, 782
TfiI	GAWTC	2 cut(s)	417, 572
Tru1I	TTAA	1 cut(s)	945
Tru9I	TTAA	1 cut(s)	945
TscAI	CASTG	2 cut(s)	418, 590
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	3 cut(s)	104, 488, 746
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	178, 703, 777
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	2 cut(s)	418, 590
Tth111I	GACNNNGTC	2 cut(s)	62, 895
VpaK11BI	GGWCC	2 cut(s)	380, 722
VspI	ATTAAT	1 cut(s)	945
XapI	RAATTY	2 cut(s)	619, 782
XceI	RCATGY	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	3 cut(s)	576, 773, 911
ZraI	GACGTC	2 cut(s)	64, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.