Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006306

Physical Location & Seq

Genomic Coordinates Forward (+)

41553094 .. 41561550

Gene Structure 8457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG313600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAGAAACTTGCAAAAGAGTTGGGTGTGGTAATACCAGTTAGCTTTTTTGAAGAGGCGAACAATGCCCACTACAATTCAATTGCCATTATTGATGCAGACGGTGCCGATCTTGGGCTTTATAGAAAGTCCCACATCCCAGATGGACCAGGCTACCAGGAAAAGTTCTACTTCAATCCAGGTGACACTGGATTCAAGGTTTTCCAGACCAAGTTCGCAAAAATAGGAGTTGCAATTTGCTGGGATCAATGGTTTCCTGAGGCAGCCCGAGCTTTGGTTCTTCAAGGTGCAGAGATTTTGTTTTATCCTACTGCTATTGGTTCTGAACCTCAAGATGGAGGACTTGATTCTAGGGATCACTGGAGGCGAGTAATGCAAGGGCATGCTGGGGCGAATTTGGTGCCTGTAGTAACATCAAACCGCATAGGAAAGGAGATAATTGAGACTGAGCATGGAAAGAGTGAGATCACATTTTATGGTAACTCTTTCATAGCAGGACCTACTGGAGAAATTGTTACAGCTGCTAATGATAAAGATGAAGCGGTACTAGTGGCAGAATTTGATTTGGATAAGATCAAATGCAAGAGGCATAGCTGGGGAGTATTCCGTGATCGACGTCCAGAGTTATACAAGGTGCTACTTTCGTTAGATGGCAAGAACACCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0050126 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

222

Amino Acids

24.64

Weight (kDa)

5.7

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CN_hydrolase	PF00795	1 - 192	8.5e-45	Carbon-nitrogen hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27450 AT2G27450 AT2G27450
fragaria_vesca	FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110
malus_domestica	MD03G1147500.v1.1 MD11G1166200.v1.1
prunus_persica	Prupe.6G132000_v2.0.a1 Prupe.6G132000_v2.0.a1
pyrus_communis	pycom03g10140 pycom11g13820
rosa_chinensis	RchiOBHm_Chr5g0045651 RchiOBHm_Chr5g0046351
rosa_laevigata	RLG00000034368
rosa_multiflora	Rmu_sc0001035.1_g000083
rosa_roxburghii	Rroxscaffold_1G00035570
rosa_rugosa	Rorug05G0224000 Rorug05G0224100
rosa_samantha	Rh5AG304900 Rh5BG313600 Rh5CG339900 Rh5DG324300
rosa_wichuraiana	Rw0G020580 Rw5G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	619
AccB1I	GGYRCC	2 cut(s)	104, 400
AciI	CCGC	2 cut(s)	421, 542
AclWI	GGATC	2 cut(s)	252, 363
AcsI	RAATTY	2 cut(s)	394, 557
AcyI	GRCGYC	1 cut(s)	616
AfaI	GTAC	1 cut(s)	546
AfiI	CCNNNNNNNGG	3 cut(s)	114, 274, 335
AgsI	TTSAA	5 cut(s)	53, 81, 175, 196, 284
AhlI	ACTAGT	1 cut(s)	547
AjnI	CCWGG	3 cut(s)	148, 156, 178
AluBI	AGCT	4 cut(s)	45, 272, 521, 594
AluI	AGCT	4 cut(s)	45, 272, 521, 594
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	252, 363
Ama87I	CYCGRG	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	263, 521
ApoI	RAATTY	2 cut(s)	394, 557
AspS9I	GGNCC	2 cut(s)	146, 497
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	267
AvaII	GGWCC	2 cut(s)	146, 497
AxyI	CCTNAGG	1 cut(s)	258
BanI	GGYRCC	2 cut(s)	104, 400
BbvI	GCAGC	2 cut(s)	275, 508
BccI	CCATC	3 cut(s)	137, 329, 644
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	3 cut(s)	150, 158, 180
BcoDI	GTCTC	1 cut(s)	437
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	2 cut(s)	351, 548
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	2 cut(s)	264, 522
BlsI	GCNGC	2 cut(s)	265, 523
Bme1390I	CCNGG	3 cut(s)	150, 158, 180
Bme18I	GGWCC	2 cut(s)	146, 497
BmeT110I	CYCGRG	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	146, 497
BmiI	GGNNCC	2 cut(s)	106, 402
BmrFI	CCNGG	3 cut(s)	150, 158, 180
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	2 cut(s)	382, 525
BpuEI	CTTGAG	1 cut(s)	315
BsaHI	GRCGYC	1 cut(s)	616
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 274, 335
Bse1I	ACTGG	4 cut(s)	38, 193, 365, 508
Bse21I	CCTNAGG	1 cut(s)	258
BseBI	CCWGG	3 cut(s)	150, 158, 180
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	3 cut(s)	114, 274, 335
BseMII	CTCAG	2 cut(s)	249, 438
BseNI	ACTGG	4 cut(s)	38, 193, 365, 508
BseXI	GCAGC	2 cut(s)	275, 508
BseYI	CCCAGC	3 cut(s)	240, 386, 594
BsgI	GTGCAG	1 cut(s)	309
BshNI	GGYRCC	2 cut(s)	104, 400
BsiHKCI	CYCGRG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	114, 274, 335
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	267
Bsp143I	GATC	6 cut(s)	109, 244, 355, 465, 573, 610
BspACI	CCGC	2 cut(s)	421, 542
BspCNI	CTCAG	2 cut(s)	250, 439
BspLI	GGNNCC	2 cut(s)	106, 402
BspPI	GGATC	2 cut(s)	252, 363
BspT107I	GGYRCC	2 cut(s)	104, 400
BsrI	ACTGG	4 cut(s)	38, 193, 365, 508
BssMI	GATC	6 cut(s)	109, 244, 355, 465, 573, 610
BssNI	GRCGYC	1 cut(s)	616
Bst2UI	CCWGG	3 cut(s)	150, 158, 180
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	48
BstACI	GRCGYC	1 cut(s)	616
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	2 cut(s)	258, 447
BstF5I	GGATG	1 cut(s)	135
BstKTI	GATC	6 cut(s)	112, 247, 358, 468, 576, 613
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	6 cut(s)	109, 244, 355, 465, 573, 610
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 104, 269, 373
BstNI	CCWGG	3 cut(s)	150, 158, 180
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	3 cut(s)	148, 156, 178
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	275, 508
Bsu36I	CCTNAGG	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	186, 358
Cac8I	GCNNGC	1 cut(s)	384
Cfr13I	GGNCC	2 cut(s)	146, 497
Csp6I	GTAC	1 cut(s)	545
CviAII	CATG	2 cut(s)	383, 452
CviJI	RGCY	7 cut(s)	45, 118, 153, 266, 272, 521, 594
CviKI_1	RGCY	7 cut(s)	45, 118, 153, 266, 272, 521, 594
CviQI	GTAC	1 cut(s)	545
DdeI	CTNAG	2 cut(s)	258, 447
DpnI	GATC	6 cut(s)	111, 246, 357, 467, 575, 612
DpnII	GATC	6 cut(s)	109, 244, 355, 465, 573, 610
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	146, 497
Eco81I	CCTNAGG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	267
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	3 cut(s)	148, 156, 178
FaeI	CATG	2 cut(s)	386, 455
FaiI	YATR	9 cut(s)	123, 384, 425, 453, 477, 491, 591, 628, 667
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	2 cut(s)	382, 451
Fnu4HI	GCNGC	2 cut(s)	264, 522
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	264, 522
FspBI	CTAG	2 cut(s)	351, 548
GluI	GCNGC	2 cut(s)	264, 522
GsaI	CCCAGC	3 cut(s)	244, 390, 598
GsuI	CTGGAG	2 cut(s)	382, 525
Hin1I	GRCGYC	1 cut(s)	616
Hin1II	CATG	2 cut(s)	386, 455
HinfI	GANTC	2 cut(s)	192, 347
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	4 cut(s)	205, 257, 332, 620
Hpy99I	CGWCG	1 cut(s)	618
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	7 cut(s)	4, 14, 98, 233, 290, 376, 582
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 104, 269, 373
HpyF3I	CTNAG	2 cut(s)	258, 447
HpySE526I	ACGT	1 cut(s)	616
Hsp92I	GRCGYC	1 cut(s)	616
Hsp92II	CATG	2 cut(s)	386, 455
Kzo9I	GATC	6 cut(s)	109, 244, 355, 465, 573, 610
Lsp1109I	GCAGC	2 cut(s)	275, 508
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	2 cut(s)	351, 548
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	4 cut(s)	182, 409, 479, 514
MalI	GATC	6 cut(s)	111, 246, 357, 467, 575, 612
MboI	GATC	6 cut(s)	109, 244, 355, 465, 573, 610
MboII	GAAGA	2 cut(s)	65, 272
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	7 cut(s)	76, 81, 234, 394, 438, 510, 557
MnlI	CCTC	6 cut(s)	49, 253, 332, 339, 357, 579
MspA1I	CMGCKG	1 cut(s)	521
MspR9I	CCNGG	3 cut(s)	150, 158, 180
MunI	CAATTG	1 cut(s)	81
MvaI	CCWGG	3 cut(s)	150, 158, 180
MwoI	GCNNNNNNNGC	4 cut(s)	65, 104, 269, 373
NdeII	GATC	6 cut(s)	109, 244, 355, 465, 573, 610
NlaIII	CATG	2 cut(s)	386, 455
NlaIV	GGNNCC	2 cut(s)	106, 402
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	386
PaeI	GCATGC	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	192, 347
PkrI	GCNGC	2 cut(s)	265, 523
PpuMI	RGGWCCY	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	497
Psp6I	CCWGG	3 cut(s)	148, 156, 178
PspFI	CCCAGC	3 cut(s)	240, 386, 594
PspGI	CCWGG	3 cut(s)	148, 156, 178
PspN4I	GGNNCC	2 cut(s)	106, 402
PspPI	GGNCC	2 cut(s)	146, 497
PspPPI	RGGWCCY	1 cut(s)	497
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	546
RsaNI	GTAC	1 cut(s)	545
SatI	GCNGC	2 cut(s)	264, 522
Sau3AI	GATC	6 cut(s)	109, 244, 355, 465, 573, 610
Sau96I	GGNCC	2 cut(s)	146, 497
ScrFI	CCNGG	3 cut(s)	150, 158, 180
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	2 cut(s)	146, 497
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SpeI	ACTAGT	1 cut(s)	547
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	7 cut(s)	76, 81, 234, 394, 438, 510, 557
SsiI	CCGC	2 cut(s)	421, 542
SspMI	CTAG	2 cut(s)	351, 548
StyD4I	CCNGG	3 cut(s)	148, 156, 178
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	1 cut(s)	613
TasI	AATT	7 cut(s)	76, 81, 234, 394, 438, 510, 557
TfiI	GAWTC	2 cut(s)	192, 347
TscAI	CASTG	2 cut(s)	193, 365
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	263, 521
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	478, 552
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	2 cut(s)	193, 365
VpaK11BI	GGWCC	2 cut(s)	146, 497
XapI	RAATTY	2 cut(s)	394, 557
XceI	RCATGY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	2 cut(s)	351, 548
ZraI	GACGTC	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.