Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006306

Physical Location & Seq

Genomic Coordinates Forward (+)

9206480 .. 9210903

Gene Structure 4424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10140.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTTCGAACATAATCCTCACAGAGAAAAGAAAATGGAGAAGGGCAAGAGGGAGGTGGTGGTCTCAGCTCTGCAGTTCGCTTGCACCGATGACGTCGCCACCAACGTCGCCACCGCCGAAAGGTTGGTTAGAGCTGCCCATGCGAAGGGTGCAAACATCATTCTTATACAGGAACTTTTTGAGGGACATTACTTCTGTCAGGCACAAAGGGAGGATTTCTTTCAGCGAGCAAAGCCTTACAAGGATCATCCAACCATTCTTAGGATGCAAATACTTGCAAAAGAGTTGGGTGTGGTAATACCAGTTAGCTTTTTCGAAGAGGCAAATAATGCTCATTACAATTCAGTTGCCATTATAGATGCTGATGGGGCAGATCTTGGACTTTATAGGAAGTCCCACATCCCAGACGGACCTGGCTACCAGGAAAAGTTCTACTTCAATCCAGGTGACACTGGATTCAAGGTTTTCAAGACCAAATTCGCAACCATTGGAGTTGCAATTTGCTGGGATCAATGGTTCCCTGAGGCTGCCCGGTGTTTGGTTCTTCAAGGTGCAGAGATATTGTTCTACCCAACTGCTATTGGTTCCGAACCTCAAGATGGAGGGCTTGATTCTCGGGATCACTGGAGGCGAGTGATGCAAGGGCATGCTGGGGCTAATGTGGTCCCTGTAGTAACTTCAAATCGTATAGGAAAGGAGATAATCGAGACCGAGCACGGAAAGAGTGAGGTCACTTTCTATGGTAACTCTTTCATAGCAGGACCCACTGGAGAAATTGTTGCAACTGCTAATGATAAAGAGGAAGCTGTACTAGTAGCACAATTTGACCTAGACAAAATCAAATGGAAGAGACATAGCTGGGGAGTATTCCGTGATCGATCGCCGCCCAGATTTATACAAGGTGCTACTGACATCAGATGGCAGCAATTCCCCGTTGTGATGATTCGTTTTGATACCATGCTTGCTCTAGAATTAATAAAGGAAGTACTTCCTCAGTACAATGCGGCCGCGGTGATTTCAAGAGTCCCCAATGGAAGGATTGGAGGATTTACGATTTACTTTAGAGGAAGTATTATTGGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006576 GO:0006595 GO:0006596 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009308 GO:0009309 GO:0009445 GO:0009446 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0034641 GO:0042401 GO:0044106 GO:0044237 GO:0044249 GO:0044271 GO:0050126 GO:0071704 GO:0097164 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

362

Amino Acids

40.62

Weight (kDa)

7.18

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006306)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27450 AT2G27450 AT2G27450
fragaria_vesca	FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110 FvH4_3g25110
malus_domestica	MD03G1147500.v1.1 MD11G1166200.v1.1
prunus_persica	Prupe.6G132000_v2.0.a1 Prupe.6G132000_v2.0.a1
pyrus_communis	pycom03g10140 pycom11g13820
rosa_chinensis	RchiOBHm_Chr5g0045651 RchiOBHm_Chr5g0046351
rosa_laevigata	RLG00000034368
rosa_multiflora	Rmu_sc0001035.1_g000083
rosa_roxburghii	Rroxscaffold_1G00035570
rosa_rugosa	Rorug05G0224000 Rorug05G0224100
rosa_samantha	Rh5AG304900 Rh5BG313600 Rh5CG339900 Rh5DG324300
rosa_wichuraiana	Rw0G020580 Rw5G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1071
AatII	GACGTC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	1071
AccII	CGCG	1 cut(s)	1010
AciI	CCGC	5 cut(s)	114, 884, 1004, 1008, 1010
AclWI	GGATC	3 cut(s)	252, 516, 627
AcoI	YGGCCR	1 cut(s)	1005
AcsI	RAATTY	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	3 cut(s)	810, 987, 998
AfiI	CCNNNNNNNGG	6 cut(s)	120, 145, 261, 538, 599, 1035
AgsI	TTSAA	6 cut(s)	439, 460, 469, 548, 681, 1020
AhlI	ACTAGT	1 cut(s)	811
AjnI	CCWGG	3 cut(s)	412, 420, 442
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
AluBI	AGCT	5 cut(s)	68, 134, 309, 806, 858
AluI	AGCT	5 cut(s)	68, 134, 309, 806, 858
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	3 cut(s)	67, 701, 844
AlwI	GGATC	3 cut(s)	252, 516, 627
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	1 cut(s)	1005
ApeKI	GCWGC	3 cut(s)	134, 527, 922
ApoI	RAATTY	1 cut(s)	476
AseI	ATTAAT	1 cut(s)	974
Asp700I	GAANNNNTTC	1 cut(s)	987
AspS9I	GGNCC	3 cut(s)	410, 664, 761
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	458, 1024
AsuII	TTCGAA	2 cut(s)	6, 315
AvaI	CYCGRG	1 cut(s)	615
AvaII	GGWCC	3 cut(s)	410, 664, 761
AxyI	CCTNAGG	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	3 cut(s)	121, 514, 934
BccI	CCATC	3 cut(s)	359, 593, 912
BciT130I	CCWGG	3 cut(s)	414, 422, 444
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	3 cut(s)	67, 701, 844
BcuI	ACTAGT	1 cut(s)	811
BfaI	CTAG	3 cut(s)	812, 830, 968
BfmI	CTRYAG	2 cut(s)	71, 669
BfuAI	ACCTGC	1 cut(s)	1071
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	6 cut(s)	135, 528, 884, 923, 1005, 1008
BlsI	GCNGC	6 cut(s)	136, 529, 885, 924, 1006, 1009
BmcAI	AGTACT	1 cut(s)	987
Bme1390I	CCNGG	4 cut(s)	414, 422, 444, 532
Bme18I	GGWCC	3 cut(s)	410, 664, 761
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	3 cut(s)	410, 664, 761
BmiI	GGNNCC	4 cut(s)	518, 586, 666, 763
BmrFI	CCNGG	4 cut(s)	414, 422, 444, 532
BmsI	GCATC	3 cut(s)	255, 349, 627
BpmI	CTGGAG	2 cut(s)	646, 789
Bpu14I	TTCGAA	2 cut(s)	6, 315
BpuEI	CTTGAG	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	532
Bsa29I	ATCGAT	1 cut(s)	877
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	2 cut(s)	67, 701
BsaJI	CCNNGG	1 cut(s)	1008
BsaXI	ACNNNNNCTCC	2 cut(s)	762, 792
Bsc4I	CCNNNNNNNGG	6 cut(s)	120, 145, 261, 538, 599, 1035
Bse1I	ACTGG	4 cut(s)	302, 457, 629, 772
Bse21I	CCTNAGG	1 cut(s)	522
BseBI	CCWGG	3 cut(s)	414, 422, 444
BseCI	ATCGAT	1 cut(s)	877
BseDI	CCNNGG	1 cut(s)	1008
BseGI	GGATG	3 cut(s)	247, 270, 399
BseLI	CCNNNNNNNGG	6 cut(s)	120, 145, 261, 538, 599, 1035
BseMII	CTCAG	3 cut(s)	78, 513, 1007
BseNI	ACTGG	4 cut(s)	302, 457, 629, 772
BseX3I	CGGCCG	1 cut(s)	1005
BseXI	GCAGC	3 cut(s)	121, 514, 934
BseYI	CCCAGC	3 cut(s)	504, 650, 858
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	1 cut(s)	1010
Bsh1285I	CGRYCG	2 cut(s)	881, 1008
BshFI	GGCC	1 cut(s)	1007
BshVI	ATCGAT	1 cut(s)	877
BsiEI	CGRYCG	2 cut(s)	881, 1008
BsiHKAI	GWGCWC	1 cut(s)	717
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	532
BslFI	GGGAC	4 cut(s)	198, 379, 650, 1010
BslI	CCNNNNNNNGG	6 cut(s)	120, 145, 261, 538, 599, 1035
BsmAI	GTCTC	3 cut(s)	67, 701, 844
BsmFI	GGGAC	4 cut(s)	198, 379, 650, 1010
BsnI	GGCC	1 cut(s)	1007
Bso31I	GGTCTC	2 cut(s)	67, 701
BsoBI	CYCGRG	1 cut(s)	615
Bsp119I	TTCGAA	2 cut(s)	6, 315
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	6 cut(s)	244, 373, 508, 619, 874, 878
BspACI	CCGC	5 cut(s)	114, 884, 1004, 1008, 1010
BspANI	GGCC	1 cut(s)	1007
BspCNI	CTCAG	3 cut(s)	77, 514, 1006
BspDI	ATCGAT	1 cut(s)	877
BspFNI	CGCG	1 cut(s)	1010
BspLI	GGNNCC	4 cut(s)	518, 586, 666, 763
BspMAI	CTGCAG	1 cut(s)	75
BspMI	ACCTGC	1 cut(s)	1071
BspPI	GGATC	3 cut(s)	252, 516, 627
BspT104I	TTCGAA	2 cut(s)	6, 315
BspTNI	GGTCTC	2 cut(s)	67, 701
BsrI	ACTGG	4 cut(s)	302, 457, 629, 772
BssECI	CCNNGG	1 cut(s)	1008
BssMI	GATC	6 cut(s)	244, 373, 508, 619, 874, 878
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	3 cut(s)	414, 422, 444
Bst6I	CTCTTC	2 cut(s)	312, 842
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBI	TTCGAA	2 cut(s)	6, 315
BstC8I	GCNNGC	4 cut(s)	82, 228, 648, 963
BstDEI	CTNAG	4 cut(s)	64, 260, 522, 993
BstDSI	CCRYGG	1 cut(s)	1008
BstF5I	GGATG	3 cut(s)	247, 270, 399
BstFNI	CGCG	1 cut(s)	1010
BstKTI	GATC	6 cut(s)	247, 376, 511, 622, 877, 881
BstMAI	GTCTC	3 cut(s)	67, 701, 844
BstMBI	GATC	6 cut(s)	244, 373, 508, 619, 874, 878
BstMCI	CGRYCG	2 cut(s)	881, 1008
BstMWI	GCNNNNNNNGC	6 cut(s)	140, 149, 232, 329, 368, 637
BstNI	CCWGG	3 cut(s)	414, 422, 444
BstNSI	RCATGY	1 cut(s)	650
BstSCI	CCNGG	4 cut(s)	412, 420, 442, 530
BstSFI	CTRYAG	2 cut(s)	71, 669
BstUI	CGCG	1 cut(s)	1010
BstV1I	GCAGC	3 cut(s)	121, 514, 934
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BstZI	CGGCCG	1 cut(s)	1005
Bsu15I	ATCGAT	1 cut(s)	877
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	1007
BsuTUI	ATCGAT	1 cut(s)	877
BtgI	CCRYGG	1 cut(s)	1008
BtsCI	GGATG	3 cut(s)	247, 270, 399
BtsIMutI	CAGTG	3 cut(s)	450, 622, 765
BveI	ACCTGC	1 cut(s)	1071
Cac8I	GCNNGC	4 cut(s)	82, 228, 648, 963
CciNI	GCGGCCGC	1 cut(s)	1005
Cfr13I	GGNCC	3 cut(s)	410, 664, 761
Cfr42I	CCGCGG	1 cut(s)	1011
ClaI	ATCGAT	1 cut(s)	877
Csp6I	GTAC	3 cut(s)	809, 986, 997
CviAII	CATG	3 cut(s)	140, 647, 958
CviQI	GTAC	3 cut(s)	809, 986, 997
DdeI	CTNAG	4 cut(s)	64, 260, 522, 993
DpnI	GATC	6 cut(s)	246, 375, 510, 621, 876, 880
DpnII	GATC	6 cut(s)	244, 373, 508, 619, 874, 878
EaeI	YGGCCR	1 cut(s)	1005
EagI	CGGCCG	1 cut(s)	1005
Eam1104I	CTCTTC	2 cut(s)	312, 842
EarI	CTCTTC	2 cut(s)	312, 842
EclXI	CGGCCG	1 cut(s)	1005
Eco31I	GGTCTC	2 cut(s)	67, 701
Eco47I	GGWCC	3 cut(s)	410, 664, 761
Eco52I	CGGCCG	1 cut(s)	1005
Eco81I	CCTNAGG	1 cut(s)	522
Eco88I	CYCGRG	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	3 cut(s)	412, 420, 442
FaeI	CATG	3 cut(s)	143, 650, 961
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FaqI	GGGAC	4 cut(s)	198, 379, 650, 1010
FatI	CATG	3 cut(s)	139, 646, 957
Fnu4HI	GCNGC	6 cut(s)	135, 528, 884, 923, 1005, 1008
FokI	GGATG	3 cut(s)	234, 277, 386
Fsp4HI	GCNGC	6 cut(s)	135, 528, 884, 923, 1005, 1008
FspBI	CTAG	3 cut(s)	812, 830, 968
GluI	GCNGC	6 cut(s)	135, 528, 884, 923, 1005, 1008
GsaI	CCCAGC	3 cut(s)	508, 654, 862
GsuI	CTGGAG	2 cut(s)	646, 789
HaeIII	GGCC	1 cut(s)	1007
HapII	CCGG	1 cut(s)	532
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	143, 650, 961
HinfI	GANTC	4 cut(s)	456, 611, 943, 1023
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	2 cut(s)	458, 1024
Hpy188I	TCNGA	2 cut(s)	589, 917
Hpy188III	TCNNGA	6 cut(s)	469, 596, 617, 706, 968, 1020
Hpy99I	CGWCG	2 cut(s)	98, 110
HpyAV	CCTTC	3 cut(s)	34, 139, 1029
HpyCH4IV	ACGT	2 cut(s)	93, 105
HpyCH4V	TGCA	9 cut(s)	73, 84, 152, 268, 278, 497, 554, 640, 782
HpyF10VI	GCNNNNNNNGC	6 cut(s)	140, 149, 232, 329, 368, 637
HpyF3I	CTNAG	4 cut(s)	64, 260, 522, 993
HpySE526I	ACGT	2 cut(s)	93, 105
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	143, 650, 961
KspI	CCGCGG	1 cut(s)	1011
Kzo9I	GATC	6 cut(s)	244, 373, 508, 619, 874, 878
Lsp1109I	GCAGC	3 cut(s)	121, 514, 934
LweI	GCATC	3 cut(s)	255, 349, 627
MaeI	CTAG	3 cut(s)	812, 830, 968
MaeII	ACGT	2 cut(s)	93, 105
MaeIII	GTNAC	4 cut(s)	446, 673, 730, 743
MalI	GATC	6 cut(s)	246, 375, 510, 621, 876, 880
MboI	GATC	6 cut(s)	244, 373, 508, 619, 874, 878
MboII	GAAGA	3 cut(s)	329, 536, 859
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	1 cut(s)	717
MluCI	AATT	7 cut(s)	340, 476, 498, 774, 821, 926, 971
MlyI	GAGTC	1 cut(s)	1032
MmeI	TCCRAC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	987
MseI	TTAA	1 cut(s)	974
MspA1I	CMGCKG	1 cut(s)	1010
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	4 cut(s)	414, 422, 444, 532
MvaI	CCWGG	3 cut(s)	414, 422, 444
MvnI	CGCG	1 cut(s)	1010
MwoI	GCNNNNNNNGC	6 cut(s)	140, 149, 232, 329, 368, 637
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	6 cut(s)	244, 373, 508, 619, 874, 878
NlaIII	CATG	3 cut(s)	143, 650, 961
NlaIV	GGNNCC	4 cut(s)	518, 586, 666, 763
NmuCI	GTSAC	2 cut(s)	446, 730
NotI	GCGGCCGC	1 cut(s)	1005
NspI	RCATGY	1 cut(s)	650
NspV	TTCGAA	2 cut(s)	6, 315
PaeI	GCATGC	1 cut(s)	650
PaqCI	CACCTGC	1 cut(s)	1071
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 102, 114
PdmI	GAANNNNTTC	1 cut(s)	987
PfeI	GAWTC	3 cut(s)	456, 611, 943
PkrI	GCNGC	6 cut(s)	136, 529, 885, 924, 1006, 1009
Ple19I	CGATCG	1 cut(s)	881
PleI	GAGTC	1 cut(s)	1031
PpsI	GAGTC	1 cut(s)	1031
PpuMI	RGGWCCY	1 cut(s)	761
PshBI	ATTAAT	1 cut(s)	974
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	3 cut(s)	412, 420, 442
PspFI	CCCAGC	3 cut(s)	504, 650, 858
PspGI	CCWGG	3 cut(s)	412, 420, 442
PspN4I	GGNNCC	4 cut(s)	518, 586, 666, 763
PspPI	GGNCC	3 cut(s)	410, 664, 761
PspPPI	RGGWCCY	1 cut(s)	761
PstI	CTGCAG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	373
PvuI	CGATCG	1 cut(s)	881
RsaI	GTAC	3 cut(s)	810, 987, 998
RsaNI	GTAC	3 cut(s)	809, 986, 997
SacII	CCGCGG	1 cut(s)	1011
SaqAI	TTAA	1 cut(s)	974
SatI	GCNGC	6 cut(s)	135, 528, 884, 923, 1005, 1008
Sau3AI	GATC	6 cut(s)	244, 373, 508, 619, 874, 878
Sau96I	GGNCC	3 cut(s)	410, 664, 761
ScaI	AGTACT	1 cut(s)	987
SchI	GAGTC	1 cut(s)	1032
ScrFI	CCNGG	4 cut(s)	414, 422, 444, 532
SduI	GDGCHC	1 cut(s)	717
SfaNI	GCATC	3 cut(s)	255, 349, 627
SfcI	CTRYAG	2 cut(s)	71, 669
Sfr303I	CCGCGG	1 cut(s)	1011
SfuI	TTCGAA	2 cut(s)	6, 315
SgrBI	CCGCGG	1 cut(s)	1011
SinI	GGWCC	3 cut(s)	410, 664, 761
SmlI	CTYRAG	1 cut(s)	594
SmoI	CTYRAG	1 cut(s)	594
SpeI	ACTAGT	1 cut(s)	811
SphI	GCATGC	1 cut(s)	650
Sse9I	AATT	7 cut(s)	340, 476, 498, 774, 821, 926, 971
SsiI	CCGC	5 cut(s)	114, 884, 1004, 1008, 1010
SspMI	CTAG	3 cut(s)	812, 830, 968
StyD4I	CCNGG	4 cut(s)	412, 420, 442, 530
TaiI	ACGT	2 cut(s)	96, 108
TaqI	TCGA	4 cut(s)	6, 315, 705, 877
TaqII	GACCGA	1 cut(s)	725
TasI	AATT	7 cut(s)	340, 476, 498, 774, 821, 926, 971
TatI	WGTACW	3 cut(s)	808, 985, 996
TauI	GCSGC	3 cut(s)	886, 1007, 1010
TfiI	GAWTC	3 cut(s)	456, 611, 943
Tru1I	TTAA	1 cut(s)	974
Tru9I	TTAA	1 cut(s)	974
TscAI	CASTG	3 cut(s)	457, 629, 772
TseFI	GTSAC	2 cut(s)	446, 730
TseI	GCWGC	3 cut(s)	134, 527, 922
Tsp45I	GTSAC	2 cut(s)	446, 730
TspDTI	ATGAA	1 cut(s)	742
TspGWI	ACGGA	3 cut(s)	423, 732, 860
TspRI	CASTG	3 cut(s)	457, 629, 772
VpaK11BI	GGWCC	3 cut(s)	410, 664, 761
VspI	ATTAAT	1 cut(s)	974
XapI	RAATTY	1 cut(s)	476
XbaI	TCTAGA	1 cut(s)	967
XceI	RCATGY	1 cut(s)	650
XmnI	GAANNNNTTC	1 cut(s)	987
XspI	CTAG	3 cut(s)	812, 830, 968
ZraI	GACGTC	1 cut(s)	94
ZrmI	AGTACT	1 cut(s)	987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.