Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012760

Physical Location & Seq

Genomic Coordinates Forward (+)

18479406 .. 18480685

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCCAATTTCTTCAATATCTACCTCTGACATTCTAAAACATCCTGTTATGGACTCGAAAGAGAGTGAAAACATAGCAGTTACTAATGCAAAGGCCGCAGCAAAAGGAAAGGCTGCAGAAGGTACTCCTACTGTTGTGGTCGCCACGAAAACCGAAATACAGACTAGAAGAGGATCCAAGAAAGGTCTCGCAATCGTAGACTTAGTCCTGAGGCTTGGTGCCAGTGCAGCTGCTTTTGCTGCTGCTTATACTACAGGCAATTCTGACCAGATTCTTCCCTTCTTCACACAGTTCCTCCAGTTCCATGCTCAATACACTGACCTCCCAACTTTCACGTTCTTTGTGGTTGCAAATGCAGTAGCTGTTGGATATATAGGCCTCTCCATGCCCTTCTCTATTGTATGCATCATTCGACCACGAGCAATAGGGCCAAGGCTTGTACTGGTTATCTTTGACACGGTGATGATTGCTCTACTGATATCTGCTGCCGGAGCTTCTTCTACGATTGTCTACTTGGCTCATAACGGCAATTTGGACTCCAACTGGCTTGCTATTTGCATGCAATATAGTAACTTTTGCCAGACACTTAGTGGGGCTGTTGTGGCTTCCTTCGTCGCTGCGGTCTTTTTCATGATGCTGGTTGTGAATTCTACGTTTACTCTAAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

224

Amino Acids

23.73

Weight (kDa)

9.22

Isoelectric Point (pI)

24.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	61 - 209	6.6e-41	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27370
fragaria_vesca	FvH4_3g25570
malus_domestica	MD03G1149400.v1.1 MD11G1168200.v1.1
prunus_persica	Prupe.6G135300_v2.0.a1
pyrus_communis	pycom03g10330 pycom11g14050
rosa_chinensis	RchiOBHm_Chr5g0046421
rosa_laevigata	RLG00000034409 RLG00000034410
rosa_multiflora	Rmu_sc0003878.1_g000049
rosa_roxburghii	Rroxscaffold_1G00034980
rosa_rugosa	Rorug05G0227900
rosa_samantha	Rh5AG309100 Rh5BG317300 Rh5CG343200 Rh5DG327500
rosa_wichuraiana	Rw0G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccI	GTMKAC	2 cut(s)	198, 510
AciI	CCGC	2 cut(s)	96, 620
AclWI	GGATC	2 cut(s)	168, 181
AcsI	RAATTY	1 cut(s)	646
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	2 cut(s)	124, 441
AgsI	TTSAA	1 cut(s)	15
AluBI	AGCT	3 cut(s)	230, 362, 494
AluI	AGCT	3 cut(s)	230, 362, 494
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	168, 181
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	3 cut(s)	93, 376, 428
ApeKI	GCWGC	8 cut(s)	98, 113, 227, 230, 239, 242, 485, 617
ApoI	RAATTY	1 cut(s)	646
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	472
AxyI	CCTNAGG	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	417
BbvI	GCAGC	8 cut(s)	100, 110, 217, 226, 229, 239, 472, 604
BceAI	ACGGC	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	2 cut(s)	114, 252
BisI	GCNGC	9 cut(s)	96, 99, 114, 228, 231, 240, 243, 486, 618
BlsI	GCNGC	9 cut(s)	97, 100, 115, 229, 232, 241, 244, 487, 619
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	175, 220
BmsI	GCATC	2 cut(s)	414, 624
BpmI	CTGGAG	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bse1I	ACTGG	4 cut(s)	222, 298, 447, 548
Bse21I	CCTNAGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	4 cut(s)	222, 298, 447, 548
BseXI	GCAGC	8 cut(s)	100, 110, 217, 226, 229, 239, 472, 604
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	95, 378, 430
BshNI	GGYRCC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	489
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	95, 378, 430
Bso31I	GGTCTC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	2 cut(s)	96, 620
BspANI	GGCC	3 cut(s)	95, 378, 430
BspCNI	CTCAG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	630
BspLI	GGNNCC	2 cut(s)	175, 220
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	2 cut(s)	168, 181
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	191
BsrI	ACTGG	4 cut(s)	222, 298, 447, 548
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	1 cut(s)	173
BssSI	CACGAG	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	431
Bst2BI	CACGAG	1 cut(s)	417
Bst4CI	ACNGT	3 cut(s)	133, 291, 460
Bst6I	CTCTTC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	549, 560
BstDEI	CTNAG	3 cut(s)	202, 209, 587
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	176
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	6 cut(s)	95, 227, 236, 239, 491, 602
BstNSI	RCATGY	1 cut(s)	562
BstSFI	CTRYAG	2 cut(s)	114, 252
BstV1I	GCAGC	8 cut(s)	100, 110, 217, 226, 229, 239, 472, 604
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
Bsu36I	CCTNAGG	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	95, 378, 430
BtsCI	GGATG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	229, 315
Cac8I	GCNNGC	2 cut(s)	549, 560
CaiI	CAGNNNCTG	1 cut(s)	362
CciI	TCATGA	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	2 cut(s)	123, 440
CviAII	CATG	4 cut(s)	305, 385, 559, 631
CviQI	GTAC	2 cut(s)	123, 440
DdeI	CTNAG	3 cut(s)	202, 209, 587
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
DraIII	CACNNNGTG	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	480
Eco81I	CCTNAGG	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	646
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	431
EcoT22I	ATGCAT	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	4 cut(s)	308, 388, 562, 634
FatI	CATG	4 cut(s)	304, 384, 558, 630
FblI	GTMKAC	2 cut(s)	198, 510
Fnu4HI	GCNGC	9 cut(s)	96, 99, 114, 228, 231, 240, 243, 486, 618
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	9 cut(s)	96, 99, 114, 228, 231, 240, 243, 486, 618
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	9 cut(s)	96, 99, 114, 228, 231, 240, 243, 486, 618
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	3 cut(s)	95, 378, 430
HapII	CCGG	1 cut(s)	489
Hin1II	CATG	4 cut(s)	308, 388, 562, 634
HinfI	GANTC	3 cut(s)	53, 271, 536
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	3 cut(s)	199, 511, 657
Hpy188I	TCNGA	2 cut(s)	28, 265
Hpy188III	TCNNGA	2 cut(s)	208, 631
Hpy8I	GTNNAC	3 cut(s)	199, 511, 657
Hpy99I	CGWCG	1 cut(s)	617
HpyAV	CCTTC	4 cut(s)	113, 289, 400, 619
HpyCH4III	ACNGT	3 cut(s)	133, 291, 460
HpyCH4IV	ACGT	2 cut(s)	335, 653
HpyCH4V	TGCA	8 cut(s)	89, 116, 227, 350, 356, 405, 558, 562
HpyF10VI	GCNNNNNNNGC	6 cut(s)	95, 227, 236, 239, 491, 602
HpyF3I	CTNAG	3 cut(s)	202, 209, 587
HpySE526I	ACGT	2 cut(s)	335, 653
Hsp92II	CATG	4 cut(s)	308, 388, 562, 634
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	8 cut(s)	100, 110, 217, 226, 229, 239, 472, 604
LweI	GCATC	2 cut(s)	414, 624
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	2 cut(s)	335, 653
MaeIII	GTNAC	2 cut(s)	79, 569
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	5 cut(s)	3, 180, 266, 274, 489
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	4 cut(s)	6, 259, 529, 646
MlyI	GAGTC	2 cut(s)	47, 530
MmeI	TCCRAC	2 cut(s)	346, 564
MnlI	CCTC	6 cut(s)	34, 164, 204, 305, 332, 389
Mph1103I	ATGCAT	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	6 cut(s)	95, 227, 236, 239, 491, 602
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	4 cut(s)	308, 388, 562, 634
NlaIV	GGNNCC	2 cut(s)	175, 220
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	1 cut(s)	562
PaeI	GCATGC	1 cut(s)	562
PagI	TCATGA	1 cut(s)	630
PceI	AGGCCT	1 cut(s)	378
PfeI	GAWTC	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	9 cut(s)	97, 100, 115, 229, 232, 241, 244, 487, 619
PleI	GAGTC	2 cut(s)	47, 530
PpsI	GAGTC	2 cut(s)	47, 530
PspN4I	GGNNCC	2 cut(s)	175, 220
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	124, 441
RsaNI	GTAC	2 cut(s)	123, 440
RseI	CAYNNNNRTG	1 cut(s)	461
SatI	GCNGC	9 cut(s)	96, 99, 114, 228, 231, 240, 243, 486, 618
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	2 cut(s)	47, 530
SetI	ASST	9 cut(s)	26, 124, 187, 232, 324, 338, 364, 496, 656
SfaNI	GCATC	2 cut(s)	414, 624
SfcI	CTRYAG	2 cut(s)	114, 252
SmiMI	CAYNNNNRTG	1 cut(s)	461
SphI	GCATGC	1 cut(s)	562
Sse9I	AATT	4 cut(s)	6, 259, 529, 646
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	2 cut(s)	96, 620
SspMI	CTAG	1 cut(s)	165
StuI	AGGCCT	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	3 cut(s)	133, 291, 460
TaiI	ACGT	2 cut(s)	338, 656
TaqI	TCGA	2 cut(s)	56, 412
TasI	AATT	4 cut(s)	6, 259, 529, 646
TatI	WGTACW	1 cut(s)	439
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	271
TscAI	CASTG	2 cut(s)	229, 322
TseI	GCWGC	8 cut(s)	98, 113, 227, 230, 239, 242, 485, 617
TspDTI	ATGAA	1 cut(s)	619
TspRI	CASTG	2 cut(s)	229, 322
Tth111I	GACNNNGTC	1 cut(s)	203
XapI	RAATTY	1 cut(s)	646
XceI	RCATGY	1 cut(s)	562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XmiI	GTMKAC	2 cut(s)	198, 510
XspI	CTAG	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.