Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012760

Physical Location & Seq

Genomic Coordinates Reverse (-)

42290069 .. 42290997

Gene Structure 929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034410

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGACTCGAAAGAGAGTGAAAACATAGTAGTTACGGATGCAAAGGCCGTGGCCAAAGGAAAGGCTGCAGAAGGCGGTGCTCCTCCTACTGCTGTGGTTGCCCCGAAAACCCAAGTACAGACTAGAAGAGGATCCAAGAAAGGTCTAGCAATCGTAGACTTGATCCTGAGGCTTGGTGCCAGTGCAGCTGCTGTTGCTGCTGCTTACAATACAGGAAATGCTCAGCAGATTCTTCCCTTCTTCACACAGTTCCTCCAGTTCCATGCTCAATACAATGATCTCCCGACTTTCACATTTTTTGTGGTTGCAAATGCAGTAGCTGTTGGATATATAGGCCTCTCCATTCCCTTCTCCATTGTCTGCATCATTCGACCACGTCCAAGAGGGCCGAGGCTTCTACTGGTTGTCTTTGACACAGTGATGATTGCTCTATTGCTATCTGCTGCTGGAGCTTCTTCTGCGATAGTCTATTTGGCTCATAACGGAAATTTGGACTCCAACTGGCTTGCTATTTGTATGCAATATAGTGCCTTTTGCCAGACACTTAGTGGGGCTGTTGTGGCTTCATTTGTCGCTGCGGTCTTTTTCATGTTGCTGGTTATGAATTCTACTTTTGCTCTTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

210

Amino Acids

22.1

Weight (kDa)

9.55

Isoelectric Point (pI)

22.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	47 - 195	2.3e-41	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27370
fragaria_vesca	FvH4_3g25570
malus_domestica	MD03G1149400.v1.1 MD11G1168200.v1.1
prunus_persica	Prupe.6G135300_v2.0.a1
pyrus_communis	pycom03g10330 pycom11g14050
rosa_chinensis	RchiOBHm_Chr5g0046421
rosa_laevigata	RLG00000034409 RLG00000034410
rosa_multiflora	Rmu_sc0003878.1_g000049
rosa_roxburghii	Rroxscaffold_1G00034980
rosa_rugosa	Rorug05G0227900
rosa_samantha	Rh5AG309100 Rh5BG317300 Rh5CG343200 Rh5DG327500
rosa_wichuraiana	Rw0G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	2 cut(s)	75, 578
AclWI	GGATC	3 cut(s)	126, 139, 157
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	487, 604
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	1 cut(s)	117
AflII	CTTAAG	1 cut(s)	620
AjiI	CACGTC	1 cut(s)	377
AluBI	AGCT	3 cut(s)	188, 320, 452
AluI	AGCT	3 cut(s)	188, 320, 452
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	126, 139, 157
AlwNI	CAGNNNCTG	2 cut(s)	191, 320
AoxI	GGCC	4 cut(s)	45, 51, 334, 386
ApeKI	GCWGC	7 cut(s)	65, 185, 188, 197, 200, 443, 575
ApoI	RAATTY	2 cut(s)	487, 604
AspS9I	GGNCC	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	7 cut(s)	52, 175, 184, 187, 197, 430, 562
BceAI	ACGGC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	123, 146
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	620
BisI	GCNGC	7 cut(s)	66, 186, 189, 198, 201, 444, 576
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	7 cut(s)	67, 187, 190, 199, 202, 445, 577
BmgBI	CACGTC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	133, 178
BmsI	GCATC	2 cut(s)	28, 372
BpmI	CTGGAG	2 cut(s)	239, 468
Bpu1102I	GCTNAGC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	48, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bse1I	ACTGG	4 cut(s)	180, 256, 405, 506
Bse21I	CCTNAGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	48, 389
BseGI	GGATG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	158, 236
BseNI	ACTGG	4 cut(s)	180, 256, 405, 506
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	7 cut(s)	52, 175, 184, 187, 197, 430, 562
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	4 cut(s)	47, 53, 336, 388
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	82
BsnI	GGCC	4 cut(s)	47, 53, 336, 388
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	131, 162, 277
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	2 cut(s)	75, 578
BspANI	GGCC	4 cut(s)	47, 53, 336, 388
BspCNI	CTCAG	2 cut(s)	159, 235
BspLI	GGNNCC	2 cut(s)	133, 178
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	3 cut(s)	126, 139, 157
BspT107I	GGYRCC	1 cut(s)	176
BspTI	CTTAAG	1 cut(s)	620
BsrI	ACTGG	4 cut(s)	180, 256, 405, 506
BssECI	CCNNGG	2 cut(s)	48, 389
BssMI	GATC	3 cut(s)	131, 162, 277
Bst4CI	ACNGT	2 cut(s)	249, 418
Bst6I	CTCTTC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	3 cut(s)	167, 222, 545
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	3 cut(s)	134, 165, 280
BstMBI	GATC	3 cut(s)	131, 162, 277
BstMWI	GCNNNNNNNGC	7 cut(s)	98, 185, 194, 197, 449, 458, 560
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	7 cut(s)	52, 175, 184, 187, 197, 430, 562
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	167
BsuRI	GGCC	4 cut(s)	47, 53, 336, 388
BtgI	CCRYGG	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	187, 423
Cac8I	GCNNGC	1 cut(s)	507
CaiI	CAGNNNCTG	2 cut(s)	191, 320
Cfr13I	GGNCC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	116
CspCI	CAANNNNNGTGG	2 cut(s)	30, 65
CviAII	CATG	2 cut(s)	263, 589
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	3 cut(s)	167, 222, 545
DpnI	GATC	3 cut(s)	133, 164, 279
DpnII	GATC	3 cut(s)	131, 162, 277
DraIII	CACNNNGTG	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco147I	AGGCCT	1 cut(s)	336
Eco81I	CCTNAGG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	604
FaeI	CATG	2 cut(s)	266, 592
FaiI	YATR	9 cut(s)	26, 264, 330, 332, 480, 518, 525, 590, 602
FatI	CATG	2 cut(s)	262, 588
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	7 cut(s)	66, 186, 189, 198, 201, 444, 576
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	7 cut(s)	66, 186, 189, 198, 201, 444, 576
FspBI	CTAG	2 cut(s)	123, 146
GluI	GCNGC	7 cut(s)	66, 186, 189, 198, 201, 444, 576
GsuI	CTGGAG	2 cut(s)	239, 468
HaeIII	GGCC	4 cut(s)	47, 53, 336, 388
Hin1II	CATG	2 cut(s)	266, 592
HinfI	GANTC	3 cut(s)	5, 229, 494
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	166, 283
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	3 cut(s)	65, 247, 358
HpyCH4III	ACNGT	2 cut(s)	249, 418
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	7 cut(s)	41, 68, 185, 308, 314, 363, 520
HpyF10VI	GCNNNNNNNGC	7 cut(s)	98, 185, 194, 197, 449, 458, 560
HpyF3I	CTNAG	3 cut(s)	167, 222, 545
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	2 cut(s)	266, 592
Kzo9I	GATC	3 cut(s)	131, 162, 277
LmnI	GCTCC	2 cut(s)	85, 449
LpnPI	CCDG	9 cut(s)	179, 193, 198, 269, 386, 432, 487, 551, 581
Lsp1109I	GCAGC	7 cut(s)	52, 175, 184, 187, 197, 430, 562
LweI	GCATC	2 cut(s)	28, 372
MaeI	CTAG	2 cut(s)	123, 146
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	133, 164, 279
MboI	GATC	3 cut(s)	131, 162, 277
MboII	GAAGA	4 cut(s)	138, 224, 232, 447
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	82
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	2 cut(s)	487, 604
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	304, 522
MnlI	CCTC	7 cut(s)	93, 122, 162, 263, 347, 377, 384
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	188
MspCI	CTTAAG	1 cut(s)	620
MwoI	GCNNNNNNNGC	7 cut(s)	98, 185, 194, 197, 449, 458, 560
NdeII	GATC	3 cut(s)	131, 162, 277
NlaIII	CATG	2 cut(s)	266, 592
NlaIV	GGNNCC	2 cut(s)	133, 178
NmeAIII	GCCGAG	1 cut(s)	414
PceI	AGGCCT	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	229
PflFI	GACNNNGTC	1 cut(s)	375
PkrI	GCNGC	7 cut(s)	67, 187, 190, 199, 202, 445, 577
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PspN4I	GGNNCC	2 cut(s)	133, 178
PspPI	GGNCC	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	2 cut(s)	191, 320
PsuI	RGATCY	1 cut(s)	131
PsyI	GACNNNGTC	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	7 cut(s)	66, 186, 189, 198, 201, 444, 576
Sau3AI	GATC	3 cut(s)	131, 162, 277
Sau96I	GGNCC	1 cut(s)	386
SchI	GAGTC	1 cut(s)	488
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	5 cut(s)	145, 190, 322, 379, 454
SfaNI	GCATC	2 cut(s)	28, 372
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	2 cut(s)	487, 604
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	75, 578
SspMI	CTAG	2 cut(s)	123, 146
StuI	AGGCCT	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	249, 418
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	2 cut(s)	8, 370
TasI	AATT	2 cut(s)	487, 604
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	2 cut(s)	187, 423
TseI	GCWGC	7 cut(s)	65, 185, 188, 197, 200, 443, 575
TspDTI	ATGAA	3 cut(s)	555, 577, 617
TspGWI	ACGGA	2 cut(s)	50, 498
TspRI	CASTG	2 cut(s)	187, 423
Tth111I	GACNNNGTC	1 cut(s)	375
Vha464I	CTTAAG	1 cut(s)	620
XapI	RAATTY	2 cut(s)	487, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	2 cut(s)	123, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.