Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012760

Physical Location & Seq

Genomic Coordinates Forward (+)

17999967 .. 18001241

Gene Structure 1275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1168200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGAAGGCGAATTACGGTGCAGAAGGAAAAACTGCTGAAGTTGCTCCTCCTGCTGTGGTCACCACAAAAGCTACCAAAATCGGGAGGAGGATGGAGAAAGGGTTTGGCAATCATAGACTTTGTGCTGCGGCTCGGTGCCGGTTCAGCTGCTCCTGCTGCTGCTTACATTACGGGGAATACCGAACAGATTCTTCCTTTCTTCACGTACTGTGGGATACATTGCCCTCTCCTTGCCCTTCTCTATAATCTGCGGCCTCATGCAATAGGGCTAAGGCTACTGCTCGTTAAACTTGACACAGTGATGGTTGCTCTAATCATAGCAGCAGATGGTGCTTCATCTGCAATTGTGTACTTGGCGCATAACGGGAACATGAACGCAAACTGGCTTGCTATTTGCAGGCAAGACAACGACTTCTGCCAGGCACTCAGTGGGGATCTTGTGGCTTCACTTGTCGCAGCAGTCTTTTTTGTGTTTCTGGTTGTGAATTCTACTTTTGCTCTTAAAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

172

Amino Acids

18.65

Weight (kDa)

9.86

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	85 - 156	3e-17	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27370
fragaria_vesca	FvH4_3g25570
malus_domestica	MD03G1149400.v1.1 MD11G1168200.v1.1
prunus_persica	Prupe.6G135300_v2.0.a1
pyrus_communis	pycom03g10330 pycom11g14050
rosa_chinensis	RchiOBHm_Chr5g0046421
rosa_laevigata	RLG00000034409 RLG00000034410
rosa_multiflora	Rmu_sc0003878.1_g000049
rosa_roxburghii	Rroxscaffold_1G00034980
rosa_rugosa	Rorug05G0227900
rosa_samantha	Rh5AG309100 Rh5BG317300 Rh5CG343200 Rh5DG327500
rosa_wichuraiana	Rw0G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	2 cut(s)	130, 253
AclWI	GGATC	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	431
AfaI	GTAC	2 cut(s)	209, 353
AfiI	CCNNNNNNNGG	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	2 cut(s)	73, 149
AluI	AGCT	2 cut(s)	73, 149
AlwI	GGATC	1 cut(s)	444
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	6 cut(s)	127, 149, 158, 161, 323, 458
ApoI	RAATTY	1 cut(s)	487
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	137
BarI	GAAGNNNNNNTAC	1 cut(s)	30
BbvI	GCAGC	6 cut(s)	114, 136, 145, 148, 335, 470
BccI	CCATC	3 cut(s)	87, 298, 323
BciT130I	CCWGG	1 cut(s)	422
BciVI	GTATCC	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	8 cut(s)	128, 131, 150, 159, 162, 254, 324, 459
BlsI	GCNGC	8 cut(s)	129, 132, 151, 160, 163, 255, 325, 460
Bme1390I	CCNGG	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	422
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	442
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	2 cut(s)	38, 102
BseXI	GCAGC	6 cut(s)	114, 136, 145, 148, 335, 470
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	2 cut(s)	130, 253
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	389
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	3 cut(s)	19, 212, 301
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	390, 401
BstDEI	CTNAG	2 cut(s)	272, 428
BstEII	GGTNACC	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 52, 146, 155, 158, 332, 341
BstNI	CCWGG	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	420
BstV1I	GCAGC	6 cut(s)	114, 136, 145, 148, 335, 470
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	98
BtsIMutI	CAGTG	2 cut(s)	306, 436
Cac8I	GCNNGC	2 cut(s)	390, 401
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	208, 352
CviAII	CATG	2 cut(s)	260, 373
CviJI	RGCY	8 cut(s)	73, 133, 149, 256, 271, 277, 388, 446
CviKI_1	RGCY	8 cut(s)	73, 133, 149, 256, 271, 277, 388, 446
CviQI	GTAC	2 cut(s)	208, 352
DdeI	CTNAG	2 cut(s)	272, 428
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
DraIII	CACNNNGTG	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	420
FaeI	CATG	2 cut(s)	263, 376
FaiI	YATR	6 cut(s)	116, 246, 261, 320, 363, 374
FatI	CATG	2 cut(s)	259, 372
Fnu4HI	GCNGC	8 cut(s)	128, 131, 150, 159, 162, 254, 324, 459
FokI	GGATG	1 cut(s)	105
Fsp4HI	GCNGC	8 cut(s)	128, 131, 150, 159, 162, 254, 324, 459
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	8 cut(s)	128, 131, 150, 159, 162, 254, 324, 459
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	2 cut(s)	263, 376
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	84
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	19, 248
HpyCH4III	ACNGT	3 cut(s)	19, 212, 301
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	22, 263, 344, 399
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 52, 146, 155, 158, 332, 341
HpyF3I	CTNAG	2 cut(s)	272, 428
HpySE526I	ACGT	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	263, 376
HspAI	GCGC	1 cut(s)	359
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	2 cut(s)	51, 157
LpnPI	CCDG	8 cut(s)	65, 154, 168, 370, 385, 407, 434, 464
Lsp1109I	GCAGC	6 cut(s)	114, 136, 145, 148, 335, 470
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	2 cut(s)	185, 193
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	3 cut(s)	12, 345, 487
MnlI	CCTC	5 cut(s)	59, 80, 83, 237, 267
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	2 cut(s)	288, 504
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	7 cut(s)	43, 52, 146, 155, 158, 332, 341
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	263, 376
NlaIV	GGNNCC	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	8 cut(s)	129, 132, 151, 160, 163, 255, 325, 460
Ppu21I	YACGTR	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	420
PspEI	GGTNACC	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	209, 353
RsaNI	GTAC	2 cut(s)	208, 352
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	288, 504
SatI	GCNGC	8 cut(s)	128, 131, 150, 159, 162, 254, 324, 459
Sau3AI	GATC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	422
SetI	ASST	3 cut(s)	75, 151, 209
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	12, 345, 487
SsiI	CCGC	2 cut(s)	130, 253
StyD4I	CCNGG	1 cut(s)	420
TaaI	ACNGT	3 cut(s)	19, 212, 301
TaiI	ACGT	1 cut(s)	209
TasI	AATT	3 cut(s)	12, 345, 487
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	2 cut(s)	133, 256
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	288, 504
Tru9I	TTAA	2 cut(s)	288, 504
TscAI	CASTG	2 cut(s)	306, 436
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	6 cut(s)	127, 149, 158, 161, 323, 458
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	2 cut(s)	327, 389
TspRI	CASTG	2 cut(s)	306, 436
XapI	RAATTY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.