Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00991

Orthogroup ID

OG0012760

Physical Location & Seq

Genomic Coordinates Reverse (-)

13970 .. 14858

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGACTCGAAAGAGAGTGAAAACATAGCAGTTACTGATGCAAAGGCCGCGGCCAAAGGTAAGGCTGCAGAAGGTGCTCATCCTACTGCTGACGTCGCAATGAAAACCAAAACACAGACTAGAAGAGGATCCAAGAAAGGACTAGCAATCGTAGACTTGGTCCTCAGGCTTGGTGCCAGTTCGGCTGCTGTTGCTGCTGCTTACAGTCCGTTAAGCTCTGAGCAGATTCTTCCCTTCTTCACACAGTTCCTCCAGTTCCATGCTGAATACAATGATCTCCCGACTTTCACGTTTTTTGTCGTTGCAAATGCGATTGCTGTTGGATATATTGGCCTCTCCATGCCCTTCTCTATTGTATGCATCATTCGACCACGTGCAATAGGGCCGAGGCTTCTACTAGTTATCTGTGACACGGTGATGATTGCTCTAGTGGTAGCTGCTGCCGGAGCTTCTTCTGCGATAATGTACTTGGCTCATAACGGAAATTTGGACTCGAACTGGCTTGCTGTTTGTATGCAATATACTAACTTTTGCCAGGGACTAAGTGGGGCTGTTGTGGCTTCATTTGTCGCTGCGGTCTTTTTCATGTTGCTGGTTGTGAATTCTGCTTTTGCTCTTAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

208

Amino Acids

21.96

Weight (kDa)

8.93

Isoelectric Point (pI)

26.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	46 - 194	4e-40	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27370
fragaria_vesca	FvH4_3g25570
malus_domestica	MD03G1149400.v1.1 MD11G1168200.v1.1
prunus_persica	Prupe.6G135300_v2.0.a1
pyrus_communis	pycom03g10330 pycom11g14050
rosa_chinensis	RchiOBHm_Chr5g0046421
rosa_laevigata	RLG00000034409 RLG00000034410
rosa_multiflora	Rmu_sc0003878.1_g000049
rosa_roxburghii	Rroxscaffold_1G00034980
rosa_rugosa	Rorug05G0227900
rosa_samantha	Rh5AG309100 Rh5BG317300 Rh5CG343200 Rh5DG327500
rosa_wichuraiana	Rw0G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	50
AciI	CCGC	3 cut(s)	48, 50, 575
AclWI	GGATC	2 cut(s)	123, 136
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	2 cut(s)	484, 601
AcvI	CACGTG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	467
AflII	CTTAAG	1 cut(s)	617
AhlI	ACTAGT	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	3 cut(s)	216, 437, 449
AluI	AGCT	3 cut(s)	216, 437, 449
Alw21I	GWGCWC	1 cut(s)	79
AlwI	GGATC	2 cut(s)	123, 136
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	4 cut(s)	45, 51, 331, 383
ApeKI	GCWGC	7 cut(s)	65, 185, 194, 197, 437, 440, 572
ApoI	RAATTY	2 cut(s)	484, 601
AspS9I	GGNCC	2 cut(s)	160, 383
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	160
AxyI	CCTNAGG	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	7 cut(s)	52, 172, 181, 184, 424, 427, 559
BciT130I	CCWGG	1 cut(s)	536
BcuI	ACTAGT	1 cut(s)	397
BfaI	CTAG	4 cut(s)	120, 143, 398, 428
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	617
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	9 cut(s)	48, 51, 66, 186, 195, 198, 438, 441, 573
BlsI	GCNGC	9 cut(s)	49, 52, 67, 187, 196, 199, 439, 442, 574
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	160, 383
BmiI	GGNNCC	2 cut(s)	130, 175
BmrFI	CCNGG	1 cut(s)	536
BmsI	GCATC	2 cut(s)	28, 369
BpmI	CTGGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	48, 386, 535
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bse1I	ACTGG	3 cut(s)	177, 253, 503
Bse21I	CCTNAGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	48, 386, 535
BseGI	GGATG	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	178, 210
BseNI	ACTGG	3 cut(s)	177, 253, 503
BseXI	GCAGC	7 cut(s)	52, 172, 181, 184, 424, 427, 559
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	4 cut(s)	47, 53, 333, 385
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	552
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	4 cut(s)	47, 53, 333, 385
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	128, 274
BspACI	CCGC	3 cut(s)	48, 50, 575
BspANI	GGCC	4 cut(s)	47, 53, 333, 385
BspCNI	CTCAG	2 cut(s)	177, 211
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	2 cut(s)	130, 175
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	2 cut(s)	123, 136
BspT107I	GGYRCC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	177, 253, 503
BssECI	CCNNGG	3 cut(s)	48, 386, 535
BssMI	GATC	2 cut(s)	128, 274
BssNI	GRCGYC	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	206, 246, 415
Bst6I	CTCTTC	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	617
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	3 cut(s)	164, 219, 542
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	2 cut(s)	131, 277
BstMBI	GATC	2 cut(s)	128, 274
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 74, 95, 182, 191, 194, 446, 455, 557
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	7 cut(s)	52, 172, 181, 184, 424, 427, 559
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
Bsu36I	CCTNAGG	1 cut(s)	164
BsuRI	GGCC	4 cut(s)	47, 53, 333, 385
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	504
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	160, 383
Cfr42I	CCGCGG	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	3 cut(s)	260, 340, 586
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	3 cut(s)	164, 219, 542
DpnI	GATC	2 cut(s)	130, 276
DpnII	GATC	2 cut(s)	128, 274
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	160
Eco72I	CACGTG	1 cut(s)	374
Eco81I	CCTNAGG	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	534
EcoT22I	ATGCAT	1 cut(s)	362
FaeI	CATG	3 cut(s)	263, 343, 589
FaiI	YATR	9 cut(s)	26, 261, 327, 341, 358, 477, 515, 522, 587
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	3 cut(s)	259, 339, 585
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	9 cut(s)	48, 51, 66, 186, 195, 198, 438, 441, 573
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	9 cut(s)	48, 51, 66, 186, 195, 198, 438, 441, 573
FspBI	CTAG	4 cut(s)	120, 143, 398, 428
GluI	GCNGC	9 cut(s)	48, 51, 66, 186, 195, 198, 438, 441, 573
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	47, 53, 333, 385
HapII	CCGG	1 cut(s)	444
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	263, 343, 589
HinfI	GANTC	3 cut(s)	5, 226, 491
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	65, 244, 355
HpyCH4III	ACNGT	3 cut(s)	206, 246, 415
HpyCH4IV	ACGT	3 cut(s)	93, 290, 373
HpyCH4V	TGCA	6 cut(s)	41, 68, 305, 360, 377, 517
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 74, 95, 182, 191, 194, 446, 455, 557
HpyF3I	CTNAG	3 cut(s)	164, 219, 542
HpySE526I	ACGT	3 cut(s)	93, 290, 373
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	263, 343, 589
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	128, 274
LmnI	GCTCC	1 cut(s)	446
LpnPI	CCDG	8 cut(s)	151, 190, 266, 457, 484, 521, 548, 578
Lsp1109I	GCAGC	7 cut(s)	52, 172, 181, 184, 424, 427, 559
LweI	GCATC	2 cut(s)	28, 369
MaeI	CTAG	4 cut(s)	120, 143, 398, 428
MaeII	ACGT	3 cut(s)	93, 290, 373
MaeIII	GTNAC	2 cut(s)	31, 407
MalI	GATC	2 cut(s)	130, 276
MboI	GATC	2 cut(s)	128, 274
MboII	GAAGA	4 cut(s)	135, 221, 229, 444
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	484, 601
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	5 cut(s)	119, 173, 260, 344, 381
Mph1103I	ATGCAT	1 cut(s)	362
MseI	TTAA	2 cut(s)	212, 618
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	50
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	9 cut(s)	47, 74, 95, 182, 191, 194, 446, 455, 557
NdeII	GATC	2 cut(s)	128, 274
NlaIII	CATG	3 cut(s)	263, 343, 589
NlaIV	GGNNCC	2 cut(s)	130, 175
NmeAIII	GCCGAG	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	407
NsiI	ATGCAT	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	226
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	9 cut(s)	49, 52, 67, 187, 196, 199, 439, 442, 574
PleI	GAGTC	1 cut(s)	485
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	485
Ppu21I	YACGTR	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	534
PspCI	CACGTG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	2 cut(s)	130, 175
PspPI	GGNCC	2 cut(s)	160, 383
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	416
SacII	CCGCGG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	212, 618
SatI	GCNGC	9 cut(s)	48, 51, 66, 186, 195, 198, 438, 441, 573
Sau3AI	GATC	2 cut(s)	128, 274
Sau96I	GGNCC	2 cut(s)	160, 383
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	8 cut(s)	61, 76, 96, 218, 293, 376, 439, 451
SfaNI	GCATC	2 cut(s)	28, 369
SfcI	CTRYAG	1 cut(s)	66
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SpeI	ACTAGT	1 cut(s)	397
Sse9I	AATT	2 cut(s)	484, 601
SsiI	CCGC	3 cut(s)	48, 50, 575
SspMI	CTAG	4 cut(s)	120, 143, 398, 428
StyD4I	CCNGG	1 cut(s)	534
TaaI	ACNGT	3 cut(s)	206, 246, 415
TaiI	ACGT	3 cut(s)	96, 293, 376
TaqI	TCGA	3 cut(s)	8, 367, 494
TasI	AATT	2 cut(s)	484, 601
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	2 cut(s)	50, 53
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	212, 618
Tru9I	TTAA	2 cut(s)	212, 618
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	7 cut(s)	65, 185, 194, 197, 437, 440, 572
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	116, 552, 574
TspGWI	ACGGA	2 cut(s)	198, 495
Tth111I	GACNNNGTC	1 cut(s)	158
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	2 cut(s)	484, 601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	4 cut(s)	120, 143, 398, 428
ZraI	GACGTC	1 cut(s)	94
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.