Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G27370 |
| fragaria_vesca | FvH4_3g25570 |
| malus_domestica | MD03G1149400.v1.1 MD11G1168200.v1.1 |
| prunus_persica | Prupe.6G135300_v2.0.a1 |
| pyrus_communis | pycom03g10330 pycom11g14050 |
| rosa_chinensis | RchiOBHm_Chr5g0046421 |
| rosa_laevigata | RLG00000034409 RLG00000034410 |
| rosa_multiflora | Rmu_sc0003878.1_g000049 |
| rosa_roxburghii | Rroxscaffold_1G00034980 |
| rosa_rugosa | Rorug05G0227900 |
| rosa_samantha | Rh5AG309100 Rh5BG317300 Rh5CG343200 Rh5DG327500 |
| rosa_wichuraiana | Rw0G021520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 330 |
| AccB1I | GGYRCC | 1 cut(s) | 191 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 136 |
| AcuI | CTGAAG | 1 cut(s) | 102 |
| AfaI | GTAC | 1 cut(s) | 40 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 136, 283 |
| AluBI | AGCT | 4 cut(s) | 119, 187, 203, 368 |
| AluI | AGCT | 4 cut(s) | 119, 187, 203, 368 |
| Alw21I | GWGCWC | 1 cut(s) | 283 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 368 |
| ApeKI | GCWGC | 6 cut(s) | 181, 184, 203, 212, 215, 353 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 243 |
| AsuHPI | GGTGA | 2 cut(s) | 32, 100 |
| BanI | GGYRCC | 1 cut(s) | 191 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 41, 73 |
| Bbv12I | GWGCWC | 1 cut(s) | 283 |
| BbvI | GCAGC | 6 cut(s) | 168, 190, 196, 199, 202, 340 |
| BccI | CCATC | 2 cut(s) | 141, 310 |
| BciVI | GTATCC | 1 cut(s) | 368 |
| BfmI | CTRYAG | 1 cut(s) | 182 |
| BfuAI | ACCTGC | 1 cut(s) | 330 |
| BfuI | GTATCC | 1 cut(s) | 368 |
| BisI | GCNGC | 6 cut(s) | 182, 185, 204, 213, 216, 354 |
| BlsI | GCNGC | 6 cut(s) | 183, 186, 205, 214, 217, 355 |
| BmiI | GGNNCC | 1 cut(s) | 193 |
| Bpu10I | CCTNAGC | 2 cut(s) | 282, 441 |
| BsaBI | GATNNNNATC | 1 cut(s) | 291 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 142, 172 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 136, 283 |
| Bse118I | RCCGGY | 1 cut(s) | 194 |
| Bse1I | ACTGG | 1 cut(s) | 271 |
| Bse8I | GATNNNNATC | 1 cut(s) | 291 |
| BseGI | GGATG | 1 cut(s) | 152 |
| BseJI | GATNNNNATC | 1 cut(s) | 291 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 136, 283 |
| BseMII | CTCAG | 1 cut(s) | 296 |
| BseNI | ACTGG | 1 cut(s) | 271 |
| BseRI | GAGGAG | 3 cut(s) | 81, 84, 156 |
| BseXI | GCAGC | 6 cut(s) | 168, 190, 196, 199, 202, 340 |
| BsgI | GTGCAG | 2 cut(s) | 84, 241 |
| BshNI | GGYRCC | 1 cut(s) | 191 |
| BsiHKAI | GWGCWC | 1 cut(s) | 283 |
| BsiSI | CCGG | 1 cut(s) | 195 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 136, 283 |
| BsmI | GAATGC | 1 cut(s) | 364 |
| Bsp1286I | GDGCHC | 1 cut(s) | 283 |
| Bsp143I | GATC | 1 cut(s) | 292 |
| BspCNI | CTCAG | 1 cut(s) | 295 |
| BspLI | GGNNCC | 1 cut(s) | 193 |
| BspMAI | CTGCAG | 1 cut(s) | 186 |
| BspMI | ACCTGC | 1 cut(s) | 330 |
| BspT107I | GGYRCC | 1 cut(s) | 191 |
| BsrFI | RCCGGY | 1 cut(s) | 194 |
| BsrI | ACTGG | 1 cut(s) | 271 |
| BssAI | RCCGGY | 1 cut(s) | 194 |
| BssMI | GATC | 1 cut(s) | 292 |
| Bst4CI | ACNGT | 3 cut(s) | 28, 62, 310 |
| BstC8I | GCNNGC | 1 cut(s) | 260 |
| BstDEI | CTNAG | 2 cut(s) | 282, 441 |
| BstEII | GGTNACC | 1 cut(s) | 106 |
| BstF5I | GGATG | 1 cut(s) | 152 |
| BstKTI | GATC | 1 cut(s) | 295 |
| BstMBI | GATC | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 86, 200, 209, 212, 359 |
| BstPI | GGTNACC | 1 cut(s) | 106 |
| BstSFI | CTRYAG | 1 cut(s) | 182 |
| BstV1I | GCAGC | 6 cut(s) | 168, 190, 196, 199, 202, 340 |
| BsuI | GTATCC | 1 cut(s) | 368 |
| BtsCI | GGATG | 1 cut(s) | 152 |
| BveI | ACCTGC | 1 cut(s) | 330 |
| Cac8I | GCNNGC | 1 cut(s) | 260 |
| CaiI | CAGNNNCTG | 1 cut(s) | 368 |
| Cfr10I | RCCGGY | 1 cut(s) | 194 |
| Csp6I | GTAC | 1 cut(s) | 39 |
| CviAII | CATG | 1 cut(s) | 429 |
| CviJI | RGCY | 8 cut(s) | 119, 187, 203, 353, 368, 387, 440, 446 |
| CviKI_1 | RGCY | 8 cut(s) | 119, 187, 203, 353, 368, 387, 440, 446 |
| CviQI | GTAC | 1 cut(s) | 39 |
| DdeI | CTNAG | 2 cut(s) | 282, 441 |
| DpnI | GATC | 1 cut(s) | 294 |
| DpnII | GATC | 1 cut(s) | 292 |
| Eco57I | CTGAAG | 1 cut(s) | 102 |
| Eco91I | GGTNACC | 1 cut(s) | 106 |
| EcoO65I | GGTNACC | 1 cut(s) | 106 |
| FaeI | CATG | 1 cut(s) | 432 |
| FatI | CATG | 1 cut(s) | 428 |
| Fnu4HI | GCNGC | 6 cut(s) | 182, 185, 204, 213, 216, 354 |
| FokI | GGATG | 1 cut(s) | 159 |
| Fsp4HI | GCNGC | 6 cut(s) | 182, 185, 204, 213, 216, 354 |
| GluI | GCNGC | 6 cut(s) | 182, 185, 204, 213, 216, 354 |
| HapII | CCGG | 1 cut(s) | 195 |
| Hin1II | CATG | 1 cut(s) | 432 |
| HinfI | GANTC | 3 cut(s) | 5, 244, 320 |
| HpaII | CCGG | 1 cut(s) | 195 |
| HphI | GGTGA | 2 cut(s) | 32, 100 |
| Hpy188III | TCNNGA | 2 cut(s) | 130, 284 |
| HpyAV | CCTTC | 3 cut(s) | 43, 62, 410 |
| HpyCH4III | ACNGT | 3 cut(s) | 28, 62, 310 |
| HpyCH4V | TGCA | 6 cut(s) | 65, 184, 258, 362, 415, 432 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 86, 200, 209, 212, 359 |
| HpyF3I | CTNAG | 2 cut(s) | 282, 441 |
| Hsp92II | CATG | 1 cut(s) | 432 |
| Kzo9I | GATC | 1 cut(s) | 292 |
| LmnI | GCTCC | 1 cut(s) | 94 |
| LpnPI | CCDG | 6 cut(s) | 111, 143, 208, 269, 284, 325 |
| Lsp1109I | GCAGC | 6 cut(s) | 168, 190, 196, 199, 202, 340 |
| MaeIII | GTNAC | 1 cut(s) | 106 |
| MalI | GATC | 1 cut(s) | 294 |
| MboI | GATC | 1 cut(s) | 292 |
| MboII | GAAGA | 3 cut(s) | 239, 259, 287 |
| MhlI | GDGCHC | 1 cut(s) | 283 |
| MluCI | AATT | 1 cut(s) | 55 |
| MmeI | TCCRAC | 1 cut(s) | 323 |
| MnlI | CCTC | 6 cut(s) | 102, 105, 134, 137, 399, 436 |
| MroXI | GAANNNNTTC | 1 cut(s) | 243 |
| MspA1I | CMGCKG | 1 cut(s) | 203 |
| MspI | CCGG | 1 cut(s) | 195 |
| Mva1269I | GAATGC | 1 cut(s) | 364 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 86, 200, 209, 212, 359 |
| NdeII | GATC | 1 cut(s) | 292 |
| NlaIII | CATG | 1 cut(s) | 432 |
| NlaIV | GGNNCC | 1 cut(s) | 193 |
| NmuCI | GTSAC | 1 cut(s) | 106 |
| PctI | GAATGC | 1 cut(s) | 364 |
| PdmI | GAANNNNTTC | 1 cut(s) | 243 |
| PfeI | GAWTC | 2 cut(s) | 244, 320 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 136 |
| PkrI | GCNGC | 6 cut(s) | 183, 186, 205, 214, 217, 355 |
| PspEI | GGTNACC | 1 cut(s) | 106 |
| PspN4I | GGNNCC | 1 cut(s) | 193 |
| PstI | CTGCAG | 1 cut(s) | 186 |
| PstNI | CAGNNNCTG | 1 cut(s) | 368 |
| PvuII | CAGCTG | 1 cut(s) | 203 |
| RsaI | GTAC | 1 cut(s) | 40 |
| RsaNI | GTAC | 1 cut(s) | 39 |
| SatI | GCNGC | 6 cut(s) | 182, 185, 204, 213, 216, 354 |
| Sau3AI | GATC | 1 cut(s) | 292 |
| SduI | GDGCHC | 1 cut(s) | 283 |
| SetI | ASST | 6 cut(s) | 121, 189, 205, 344, 370, 428 |
| SfcI | CTRYAG | 1 cut(s) | 182 |
| Sse9I | AATT | 1 cut(s) | 55 |
| TaaI | ACNGT | 3 cut(s) | 28, 62, 310 |
| TaqI | TCGA | 1 cut(s) | 422 |
| TasI | AATT | 1 cut(s) | 55 |
| TfiI | GAWTC | 2 cut(s) | 244, 320 |
| TseFI | GTSAC | 1 cut(s) | 106 |
| TseI | GCWGC | 6 cut(s) | 181, 184, 203, 212, 215, 353 |
| Tsp45I | GTSAC | 1 cut(s) | 106 |
| TspGWI | ACGGA | 1 cut(s) | 266 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 136 |
| XmnI | GAANNNNTTC | 1 cut(s) | 243 |