Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012760

Physical Location & Seq

Genomic Coordinates Forward (+)

23678390 .. 23680132

Gene Structure 1743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAAGATAGGAGTCATAGGACTAGTCCTTGGGATGGGTATTGGTGGATGTGTTATCTTGATGGTTGGGTTTGTTTTCCTTTGCTTCTCGTCGAGGAAAAAGAGAGCAACAGAAGAATCTGCTGATACAAATCCTATGTTTGATGAATTTAATGACGTTGAACTTGAGATGGATCAAATTCCCAGGAAATTTTTGTACAGTGAGTTAGCTCGCGCAACCAGAAATTTCGCTGACAGAGAAAAAGTTGGTGGAGGAGGATTTGATGGAGTTTATAGAGGCTTCATAGAAGACTTGAAGTCATATGTTGCCGTTAAGAGAATATCCATAGAGTCTAGCCAAGGACTAAAGGAGTATGAAGCTGAAGTGAAGATCATCAGTCGTCTCCGGCATCGAAATCTTGTGCAACTCATTGGTTGGTGCCACTACGAAGGACAGCTCCTACTAGTCTACAAGTTCATACCCAACGGCAGCTTGGATTCTCATCTATACAATGGAAACAGCTCGTTGACATGGGAAGTAAGATATAGAATTGCTCTAGCATTGGCGTCTGCGTTGTTCTATCTACACGAAGAATCAGTGCGATGTGTGCTGCACTGGAATATTAAATCCAGTAACGTCATGCTGGATTCGAATTTCAACGCCAAACTCGGAGATTTTGGGTTAGCACGATTCGTGGACCATGAAAAAGAGCTGCAAACAACTTCCCTGAGAGGAACTATGAGCTACATGGCTCCGGAATATGTTATTACGGGGATGGCTAGCAAGAGAACGGAAGTCTACAGCTTTGGTATAATTTGCTTGGAGATTGCCTGCGGAAGAAAACTCATCGATCTCAAGTCTGTCAATATGGTCGATTGGGTTTGGCAGCTCTATGAAGAGAAGAAGGTTACTGAAGCAGCCGACCCAAAAGTGTGTGGAAATTATGATGAGAAACAAATGGAGTGTTTGATGATTGTTGGGCTGTGGTGTGCTCATCCCGATTACAAAATGAGGCCTTCGATACAACGGGTAATCCAAGTGCTTAATTTCGAGATTCCATTGCCCATCTTTCAATCCAAGACGCCGGTGGCAACCAATTCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

361

Amino Acids

41.06

Weight (kDa)

6.67

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 339	1.2e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	80 - 340	1.9e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27370
fragaria_vesca	FvH4_3g25570
malus_domestica	MD03G1149400.v1.1 MD11G1168200.v1.1
prunus_persica	Prupe.6G135300_v2.0.a1
pyrus_communis	pycom03g10330 pycom11g14050
rosa_chinensis	RchiOBHm_Chr5g0046421
rosa_laevigata	RLG00000034409 RLG00000034410
rosa_multiflora	Rmu_sc0003878.1_g000049
rosa_roxburghii	Rroxscaffold_1G00034980
rosa_rugosa	Rorug05G0227900
rosa_samantha	Rh5AG309100 Rh5BG317300 Rh5CG343200 Rh5DG327500
rosa_wichuraiana	Rw0G021520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	417
AccI	GTMKAC	2 cut(s)	447, 777
AccII	CGCG	1 cut(s)	213
AccIII	TCCGGA	1 cut(s)	733
AciI	CCGC	1 cut(s)	813
AclWI	GGATC	1 cut(s)	180
AcsI	RAATTY	5 cut(s)	146, 177, 188, 223, 631
AcuI	CTGAAG	2 cut(s)	381, 912
AcyI	GRCGYC	2 cut(s)	545, 1061
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	4 cut(s)	161, 295, 637, 1052
AhdI	GACNNNNNGTC	1 cut(s)	295
AhlI	ACTAGT	2 cut(s)	22, 442
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	9 cut(s)	209, 359, 436, 471, 501, 691, 723, 783, 868
AluI	AGCT	9 cut(s)	209, 359, 436, 471, 501, 691, 723, 783, 868
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	733
AoxI	GGCC	1 cut(s)	992
ApeKI	GCWGC	5 cut(s)	468, 589, 691, 865, 896
ApoI	RAATTY	5 cut(s)	146, 177, 188, 223, 631
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	676
AsuII	TTCGAA	1 cut(s)	629
AsuNHI	GCTAGC	1 cut(s)	758
AvaII	GGWCC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	973
BbvI	GCAGC	5 cut(s)	480, 576, 678, 877, 908
BccI	CCATC	6 cut(s)	28, 55, 163, 257, 748, 1052
BceAI	ACGGC	2 cut(s)	293, 481
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	386
BcuI	ACTAGT	2 cut(s)	22, 442
BfaI	CTAG	5 cut(s)	23, 333, 443, 536, 759
BfmI	CTRYAG	1 cut(s)	778
BisI	GCNGC	5 cut(s)	469, 590, 692, 866, 897
BlsI	GCNGC	5 cut(s)	470, 591, 693, 867, 898
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	676
BmeRI	GACNNNNNGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	676
BmiI	GGNNCC	2 cut(s)	419, 732
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	397
BmtI	GCTAGC	1 cut(s)	762
BpiI	GAAGAC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	629
BpuEI	CTTGAG	2 cut(s)	185, 818
Bsa29I	ATCGAT	1 cut(s)	828
BsaBI	GATNNNNATC	2 cut(s)	129, 480
BsaHI	GRCGYC	2 cut(s)	545, 1061
BsaJI	CCNNGG	3 cut(s)	28, 182, 337
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	1063
Bse1I	ACTGG	2 cut(s)	599, 609
Bse3DI	GCAATG	1 cut(s)	1037
Bse8I	GATNNNNATC	2 cut(s)	129, 480
BseAI	TCCGGA	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	3 cut(s)	28, 182, 337
BseGI	GGATG	4 cut(s)	39, 53, 759, 973
BseJI	GATNNNNATC	2 cut(s)	129, 480
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMI	GCAATG	1 cut(s)	1037
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	2 cut(s)	599, 609
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	5 cut(s)	480, 576, 678, 877, 908
BsgI	GTGCAG	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	994
BshNI	GGYRCC	1 cut(s)	417
BshVI	ATCGAT	1 cut(s)	828
BsiHKAI	GWGCWC	1 cut(s)	973
BsiSI	CCGG	3 cut(s)	385, 734, 1064
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	386
BsmBI	CGTCTC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	994
Bsp119I	TTCGAA	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp13I	TCCGGA	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	172, 369, 829
BspACI	CCGC	1 cut(s)	813
BspANI	GGCC	1 cut(s)	994
BspCNI	CTCAG	1 cut(s)	699
BspDI	ATCGAT	1 cut(s)	828
BspEI	TCCGGA	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	419, 732
BspOI	GCTAGC	1 cut(s)	762
BspPI	GGATC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	629
BspT107I	GGYRCC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	1037
BsrFI	RCCGGY	1 cut(s)	1063
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	599, 609
BssAI	RCCGGY	1 cut(s)	1063
BssECI	CCNNGG	3 cut(s)	28, 182, 337
BssMI	GATC	3 cut(s)	172, 369, 829
BssNI	GRCGYC	2 cut(s)	545, 1061
BssT1I	CCWWGG	2 cut(s)	28, 337
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	870
BstACI	GRCGYC	2 cut(s)	545, 1061
BstAUI	TGTACA	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	629
BstC8I	GCNNGC	3 cut(s)	211, 760, 811
BstDEI	CTNAG	1 cut(s)	707
BstF5I	GGATG	4 cut(s)	39, 53, 759, 973
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	3 cut(s)	175, 372, 832
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	3 cut(s)	172, 369, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	586
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	778
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	5 cut(s)	480, 576, 678, 877, 908
BstV2I	GAAGAC	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	828
BsuRI	GGCC	1 cut(s)	994
BsuTUI	ATCGAT	1 cut(s)	828
BtgZI	GCGATG	1 cut(s)	595
BtsCI	GGATG	4 cut(s)	39, 53, 759, 973
BtsIMutI	CAGTG	3 cut(s)	205, 582, 592
Cac8I	GCNNGC	3 cut(s)	211, 760, 811
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	1063
Cfr13I	GGNCC	1 cut(s)	676
ClaI	ATCGAT	1 cut(s)	828
CseI	GACGC	2 cut(s)	534, 1069
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	5 cut(s)	510, 619, 680, 727, 1083
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	707
DpnI	GATC	3 cut(s)	174, 371, 831
DpnII	GATC	3 cut(s)	172, 369, 829
DriI	GACNNNNNGTC	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	870
Eam1105I	GACNNNNNGTC	1 cut(s)	295
EarI	CTCTTC	1 cut(s)	870
Eco130I	CCWWGG	2 cut(s)	28, 337
Eco147I	AGGCCT	1 cut(s)	994
Eco47I	GGWCC	1 cut(s)	676
Eco57I	CTGAAG	2 cut(s)	381, 912
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	2 cut(s)	28, 337
ErhI	CCWWGG	2 cut(s)	28, 337
Esp3I	CGTCTC	1 cut(s)	386
FaeI	CATG	5 cut(s)	513, 622, 683, 730, 1086
FatI	CATG	5 cut(s)	509, 618, 679, 726, 1082
FauNDI	CATATG	1 cut(s)	301
FblI	GTMKAC	2 cut(s)	447, 777
Fnu4HI	GCNGC	5 cut(s)	469, 590, 692, 866, 897
FokI	GGATG	4 cut(s)	46, 60, 766, 960
Fsp4HI	GCNGC	5 cut(s)	469, 590, 692, 866, 897
FspBI	CTAG	5 cut(s)	23, 333, 443, 536, 759
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	5 cut(s)	469, 590, 692, 866, 897
HaeIII	GGCC	1 cut(s)	994
HapII	CCGG	3 cut(s)	385, 734, 1064
HgaI	GACGC	2 cut(s)	534, 1069
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	2 cut(s)	545, 1061
Hin1II	CATG	5 cut(s)	513, 622, 683, 730, 1086
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	8 cut(s)	12, 116, 329, 476, 572, 626, 669, 1033
HpaII	CCGG	3 cut(s)	385, 734, 1064
Hpy166II	GTNNAC	4 cut(s)	448, 507, 676, 778
Hpy188I	TCNGA	1 cut(s)	650
Hpy188III	TCNNGA	4 cut(s)	58, 734, 977, 1030
Hpy8I	GTNNAC	4 cut(s)	448, 507, 676, 778
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	422, 877, 1005
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	2 cut(s)	156, 615
HpyCH4V	TGCA	3 cut(s)	403, 592, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	586
HpyF3I	CTNAG	1 cut(s)	707
HpySE526I	ACGT	2 cut(s)	156, 615
Hsp92I	GRCGYC	2 cut(s)	545, 1061
Hsp92II	CATG	5 cut(s)	513, 622, 683, 730, 1086
HspAI	GCGC	1 cut(s)	213
Kpn2I	TCCGGA	1 cut(s)	733
Kzo9I	GATC	3 cut(s)	172, 369, 829
LmnI	GCTCC	2 cut(s)	441, 736
Lsp1109I	GCAGC	5 cut(s)	480, 576, 678, 877, 908
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	5 cut(s)	23, 333, 443, 536, 759
MaeII	ACGT	2 cut(s)	156, 615
MaeIII	GTNAC	2 cut(s)	611, 886
MalI	GATC	3 cut(s)	174, 371, 831
MboI	GATC	3 cut(s)	172, 369, 829
MboII	GAAGA	8 cut(s)	16, 125, 299, 379, 581, 828, 887, 892
MhlI	GDGCHC	1 cut(s)	973
MlyI	GAGTC	2 cut(s)	21, 338
MnlI	CCTC	6 cut(s)	87, 245, 248, 269, 704, 984
MroI	TCCGGA	1 cut(s)	733
MseI	TTAA	4 cut(s)	150, 312, 603, 1023
MspI	CCGG	3 cut(s)	385, 734, 1064
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	586
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	3 cut(s)	172, 369, 829
NheI	GCTAGC	1 cut(s)	758
NlaIII	CATG	5 cut(s)	513, 622, 683, 730, 1086
NlaIV	GGNNCC	2 cut(s)	419, 732
NspV	TTCGAA	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	994
PfeI	GAWTC	6 cut(s)	116, 476, 572, 626, 669, 1033
PkrI	GCNGC	5 cut(s)	470, 591, 693, 867, 898
PleI	GAGTC	2 cut(s)	20, 337
PpsI	GAGTC	2 cut(s)	20, 337
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	419, 732
PspPI	GGNCC	1 cut(s)	676
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	4 cut(s)	150, 312, 603, 1023
SatI	GCNGC	5 cut(s)	469, 590, 692, 866, 897
Sau3AI	GATC	3 cut(s)	172, 369, 829
Sau96I	GGNCC	1 cut(s)	676
SchI	GAGTC	2 cut(s)	21, 338
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	973
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	778
SfuI	TTCGAA	1 cut(s)	629
SgrAI	CRCCGGYG	1 cut(s)	1063
SinI	GGWCC	1 cut(s)	676
SmlI	CTYRAG	2 cut(s)	164, 833
SmoI	CTYRAG	2 cut(s)	164, 833
SpeI	ACTAGT	2 cut(s)	22, 442
SseBI	AGGCCT	1 cut(s)	994
SsiI	CCGC	1 cut(s)	813
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	5 cut(s)	23, 333, 443, 536, 759
StuI	AGGCCT	1 cut(s)	994
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	28, 337
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	2 cut(s)	159, 618
TaqI	TCGA	7 cut(s)	92, 391, 629, 828, 852, 998, 1029
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	6 cut(s)	116, 476, 572, 626, 669, 1033
Tru1I	TTAA	4 cut(s)	150, 312, 603, 1023
Tru9I	TTAA	4 cut(s)	150, 312, 603, 1023
TscAI	CASTG	3 cut(s)	205, 582, 599
TseI	GCWGC	5 cut(s)	468, 589, 691, 865, 896
TspDTI	ATGAA	7 cut(s)	17, 159, 271, 369, 445, 696, 888
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	3 cut(s)	205, 582, 599
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	5 cut(s)	146, 177, 188, 223, 631
XcmI	CCANNNNNNNNNTGG	2 cut(s)	469, 1063
XmiI	GTMKAC	2 cut(s)	447, 777
XspI	CTAG	5 cut(s)	23, 333, 443, 536, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.