Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Forward (+)

21128976 .. 21134341

Gene Structure 5366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28130.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAATGCTCTCCTTCTTCTTCTTCTTCTTCTCTAAGCAGCTTCTGCATACTGCGAAAGCCTTGCCCATCTCTACCGTCATTCACCACCTTTTATAGGAAGCAGCAGCAGCAGCGACCCCTTACCCAACTCTCTGCAGTTTCCTACAACAAGTTCATTCACTTCGCTTTGGACGAATCCAAACGCCACACCCACTTGGTCCCTTCTCCCCTCCAGGAAAGATACAATTCCATGATTTCAATGGATGGTGATGCAGAACTTCAAATGTTATCATTCAAAGCTGCTAAGATTAGGCTTTTACGTAGTCTATGTATTGAGACCCAAACAATGCAGGTTTTGGATTTCGCTGTCTTCCCAGAACCAGAATATGATATGCCAATATTTTGTGCCAACTTCTTCACCAGTGCGAATGTAAACATAGTTGTGTTGGACCTCAATCCTTTGCACAACGTCATTATTGAAAGAGAATACAGAGATAAATACTACAAAAGCCTAATACCTCTTGGTGTTAAATATGCTGAGCTTTTACCATGGGGTGGAAAGCTTACTAGTGAGTCATTGAAATTTTTTTCACCCATTGTGATATGGACAAGATTTACGTCAAGTTCAAACAATTATGAGATTTTATATTCTGCTTTCATGGATTATTACAAGGCGTGGCTTGAGCTGATGGACCAAGCAGTAGTGGAGACAAATGCCTCTCAAATTAAACGTAACCATGAAGCACAACATCGATATCTAACTTGGAGAGCAGAGAAGGATCCTGGACATGGAGTTCTCAAAAGGTTGATTGGGGAGACACAAGCAAAGGATTTGCTGGTGAACTTCCTGTTCAATGGAATTGCTAACCTAGGAAGCAAAAGTTTCCTGGAGTACTTCCCAGAGTACTGCTGTGAGGATGGAACTATAAATCAGAATCGTAGTATAATCGGAAAGTCTTACGAAAATCGGCCGTGGGATAGGAAAGGAGAATTTGTTAGTAACAATTTTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

333

Amino Acids

38.42

Weight (kDa)

7.04

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	60 - 253	1.6e-47	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	536
AclWI	GGATC	2 cut(s)	755, 768
AcoI	YGGCCR	1 cut(s)	950
AcsI	RAATTY	2 cut(s)	563, 971
AfaI	GTAC	2 cut(s)	875, 887
AfiI	CCNNNNNNNGG	3 cut(s)	96, 536, 770
AgsI	TTSAA	8 cut(s)	240, 263, 277, 461, 562, 609, 835, 992
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	3 cut(s)	213, 763, 867
AloI	GAACNNNNNNTCC	2 cut(s)	759, 791
AluBI	AGCT	5 cut(s)	42, 281, 523, 544, 667
AluI	AGCT	5 cut(s)	42, 281, 523, 544, 667
Alw26I	GTCTC	3 cut(s)	311, 683, 791
AlwI	GGATC	2 cut(s)	755, 768
AlwNI	CAGNNNCTG	1 cut(s)	45
AoxI	GGCC	1 cut(s)	950
ApeKI	GCWGC	6 cut(s)	39, 103, 106, 109, 112, 281
ApoI	RAATTY	2 cut(s)	563, 971
AspA2I	CCTAGG	1 cut(s)	850
AspS9I	GGNCC	3 cut(s)	199, 430, 673
AsuHPI	GGTGA	5 cut(s)	76, 260, 391, 564, 832
AvaII	GGWCC	3 cut(s)	199, 430, 673
AvrII	CCTAGG	1 cut(s)	850
BamHI	GGATCC	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	6 cut(s)	51, 115, 118, 121, 124, 268
BccI	CCATC	4 cut(s)	76, 239, 664, 893
BceAI	ACGGC	1 cut(s)	937
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	3 cut(s)	215, 765, 869
BcoDI	GTCTC	3 cut(s)	311, 683, 791
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	2 cut(s)	549, 851
BfmI	CTRYAG	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 282
BlnI	CCTAGG	1 cut(s)	850
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	6 cut(s)	41, 105, 108, 111, 114, 283
BmcAI	AGTACT	2 cut(s)	875, 887
Bme1390I	CCNGG	3 cut(s)	215, 765, 869
Bme18I	GGWCC	3 cut(s)	199, 430, 673
BmgT120I	GGNCC	3 cut(s)	199, 430, 673
BmiI	GGNNCC	2 cut(s)	201, 762
BmrFI	CCNGG	3 cut(s)	215, 765, 869
BmsI	GCATC	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	2 cut(s)	197, 890
Bpu1102I	GCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	683
Bsa29I	ATCGAT	1 cut(s)	733
BsaAI	YACGTR	1 cut(s)	302
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	3 cut(s)	530, 850, 953
BsaXI	ACNNNNNCTCC	2 cut(s)	960, 990
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 536, 770
Bse1I	ACTGG	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	215, 765, 869
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	3 cut(s)	530, 850, 953
BseGI	GGATG	2 cut(s)	250, 904
BseLI	CCNNNNNNNGG	3 cut(s)	96, 536, 770
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	402
BseX3I	CGGCCG	1 cut(s)	950
BseXI	GCAGC	6 cut(s)	51, 115, 118, 121, 124, 268
Bsh1285I	CGRYCG	1 cut(s)	953
BshFI	GGCC	1 cut(s)	952
BshVI	ATCGAT	1 cut(s)	733
BsiEI	CGRYCG	1 cut(s)	953
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	96, 536, 770
BsmAI	GTCTC	3 cut(s)	311, 683, 791
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	952
Bso31I	GGTCTC	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	760
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp19I	CCATGG	1 cut(s)	530
BspANI	GGCC	1 cut(s)	952
BspCNI	CTCAG	1 cut(s)	511
BspDI	ATCGAT	1 cut(s)	733
BspLI	GGNNCC	2 cut(s)	201, 762
BspMAI	CTGCAG	1 cut(s)	139
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	755, 768
BspTNI	GGTCTC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	530, 850, 953
BssMI	GATC	1 cut(s)	760
BssT1I	CCWWGG	2 cut(s)	530, 850
Bst2UI	CCWGG	3 cut(s)	215, 765, 869
Bst4CI	ACNGT	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	302
BstDEI	CTNAG	3 cut(s)	35, 285, 519
BstDSI	CCRYGG	2 cut(s)	530, 953
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstF5I	GGATG	2 cut(s)	250, 904
BstKTI	GATC	1 cut(s)	763
BstMAI	GTCTC	3 cut(s)	311, 683, 791
BstMBI	GATC	1 cut(s)	760
BstMCI	CGRYCG	1 cut(s)	953
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 109, 112
BstNI	CCWGG	3 cut(s)	215, 765, 869
BstSCI	CCNGG	3 cut(s)	213, 763, 867
BstSFI	CTRYAG	1 cut(s)	135
BstSNI	TACGTA	1 cut(s)	302
BstV1I	GCAGC	6 cut(s)	51, 115, 118, 121, 124, 268
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BstZI	CGGCCG	1 cut(s)	950
Bsu15I	ATCGAT	1 cut(s)	733
BsuRI	GGCC	1 cut(s)	952
BsuTUI	ATCGAT	1 cut(s)	733
BtgI	CCRYGG	2 cut(s)	530, 953
BtsCI	GGATG	2 cut(s)	250, 904
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	45
Cfr13I	GGNCC	3 cut(s)	199, 430, 673
ClaI	ATCGAT	1 cut(s)	733
Csp6I	GTAC	2 cut(s)	874, 886
CviAII	CATG	5 cut(s)	232, 531, 640, 719, 770
CviQI	GTAC	2 cut(s)	874, 886
DdeI	CTNAG	3 cut(s)	35, 285, 519
DpnI	GATC	1 cut(s)	762
DpnII	GATC	1 cut(s)	760
EaeI	YGGCCR	1 cut(s)	950
EagI	CGGCCG	1 cut(s)	950
EclXI	CGGCCG	1 cut(s)	950
Eco105I	TACGTA	1 cut(s)	302
Eco130I	CCWWGG	2 cut(s)	530, 850
Eco31I	GGTCTC	1 cut(s)	311
Eco32I	GATATC	1 cut(s)	737
Eco47I	GGWCC	3 cut(s)	199, 430, 673
Eco52I	CGGCCG	1 cut(s)	950
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoRII	CCWGG	3 cut(s)	213, 763, 867
EcoRV	GATATC	1 cut(s)	737
EcoT14I	CCWWGG	2 cut(s)	530, 850
ErhI	CCWWGG	2 cut(s)	530, 850
FaeI	CATG	5 cut(s)	235, 534, 643, 722, 773
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	5 cut(s)	231, 530, 639, 718, 769
Fnu4HI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 282
FokI	GGATG	2 cut(s)	257, 911
Fsp4HI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 282
FspBI	CTAG	2 cut(s)	549, 851
GluI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 282
GsuI	CTGGAG	2 cut(s)	197, 890
HaeIII	GGCC	1 cut(s)	952
Hin1II	CATG	5 cut(s)	235, 534, 643, 722, 773
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	176, 554, 916
HphI	GGTGA	5 cut(s)	76, 260, 391, 564, 832
Hpy166II	GTNNAC	2 cut(s)	415, 823
Hpy188I	TCNGA	2 cut(s)	915, 932
Hpy8I	GTNNAC	2 cut(s)	415, 823
HpyAV	CCTTC	3 cut(s)	24, 213, 751
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4IV	ACGT	4 cut(s)	301, 450, 599, 712
HpyCH4V	TGCA	5 cut(s)	48, 137, 254, 331, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 109, 112
HpyF3I	CTNAG	3 cut(s)	35, 285, 519
HpySE526I	ACGT	4 cut(s)	301, 450, 599, 712
Hsp92II	CATG	5 cut(s)	235, 534, 643, 722, 773
Kzo9I	GATC	1 cut(s)	760
Lsp1109I	GCAGC	6 cut(s)	51, 115, 118, 121, 124, 268
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	549, 851
MaeII	ACGT	4 cut(s)	301, 450, 599, 712
MaeIII	GTNAC	2 cut(s)	713, 980
MalI	GATC	1 cut(s)	762
MboI	GATC	1 cut(s)	760
MboII	GAAGA	7 cut(s)	9, 12, 15, 18, 21, 343, 388
MflI	RGATCY	1 cut(s)	760
MluCI	AATT	8 cut(s)	226, 563, 613, 705, 840, 971, 985, 994
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	221, 443, 510, 709, 889
MseI	TTAA	2 cut(s)	510, 708
MslI	CAYNNNNRTG	1 cut(s)	422
MspR9I	CCNGG	3 cut(s)	215, 765, 869
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	3 cut(s)	215, 765, 869
MwoI	GCNNNNNNNGC	3 cut(s)	45, 109, 112
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	1 cut(s)	760
NlaIII	CATG	5 cut(s)	235, 534, 643, 722, 773
NlaIV	GGNNCC	2 cut(s)	201, 762
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	176, 916
PflMI	CCANNNNNTGG	1 cut(s)	536
PfoI	TCCNGGA	3 cut(s)	213, 763, 867
PkrI	GCNGC	6 cut(s)	41, 105, 108, 111, 114, 283
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
Ppu21I	YACGTR	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	213, 763, 867
PspGI	CCWGG	3 cut(s)	213, 763, 867
PspN4I	GGNNCC	2 cut(s)	201, 762
PspPI	GGNCC	3 cut(s)	199, 430, 673
PstI	CTGCAG	1 cut(s)	139
PstNI	CAGNNNCTG	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	760
RsaI	GTAC	2 cut(s)	875, 887
RsaNI	GTAC	2 cut(s)	874, 886
RseI	CAYNNNNRTG	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	510, 708
SatI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 282
Sau3AI	GATC	1 cut(s)	760
Sau96I	GGNCC	3 cut(s)	199, 430, 673
ScaI	AGTACT	2 cut(s)	875, 887
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	3 cut(s)	215, 765, 869
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	135
SinI	GGWCC	3 cut(s)	199, 430, 673
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SnaBI	TACGTA	1 cut(s)	302
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	8 cut(s)	226, 563, 613, 705, 840, 971, 985, 994
SspI	AATATT	1 cut(s)	381
SspMI	CTAG	2 cut(s)	549, 851
StyD4I	CCNGG	3 cut(s)	213, 763, 867
StyI	CCWWGG	2 cut(s)	530, 850
TaaI	ACNGT	1 cut(s)	78
TaiI	ACGT	4 cut(s)	304, 453, 602, 715
TaqI	TCGA	1 cut(s)	733
TasI	AATT	8 cut(s)	226, 563, 613, 705, 840, 971, 985, 994
TatI	WGTACW	2 cut(s)	873, 885
TfiI	GAWTC	2 cut(s)	176, 916
Tru1I	TTAA	2 cut(s)	510, 708
Tru9I	TTAA	2 cut(s)	510, 708
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	6 cut(s)	39, 103, 106, 109, 112, 281
TspDTI	ATGAA	3 cut(s)	145, 628, 735
TspRI	CASTG	1 cut(s)	409
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	3 cut(s)	199, 430, 673
XagI	CCTNNNNNAGG	1 cut(s)	94
XapI	RAATTY	2 cut(s)	563, 971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmaJI	CCTAGG	1 cut(s)	850
XspI	CTAG	2 cut(s)	549, 851
ZrmI	AGTACT	2 cut(s)	875, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.