Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Forward (+)

53493397 .. 53498619

Gene Structure 5223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG358900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAATGCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTTAAGCAGCTTTTCCATACTGCGAAAGCCTTGCCCATTTGTACCACCATTTACCGCCGTTTATAGGAAGCAGCAGCAGCAGCGGCGACCCCTTATCCAACTCTCCGCCGTTTCTTACAACAAATTCATTCACTTCGCTTTGGATGAATCCAAACGCCGCACCCATTTGGCCCCTTCTCCCCTCCAGGAAAGATATAATTCCATGGTTTCCATGGATGGTAATGCAGAACTTCAAATGTCATCCTTCAAAGCTACTAAGATTAGGCTTTTACGTAGCCTATGTATTGAGACTCGAACAATGCAGGTTTTGGATTTTGCTGTCTTCCCAGAACCAGAATTTGATATGCCAATCTTTTGTGCCAACTTCTTCACCAGTGCGGATGTCAACATAGTTGTGCTGGACCTCAACCCTTTGCACAACGTTATTATTGAAAGAGAATACAGAGATAAATACTACAAAGGCCTAATACCTCTTGGTGTCAAATATGCTGAGCTTTTACCATGGGGTGGGAAGCTTACTAGCGAGTCATTGAAATTTTTTTCACCCATTGTTATATGGACAAGATTTACGTCAAGTCCAGAAAAATATGAGGTTTTATATTCGGCTTTCATGGATTATTACAAGGCATGGCTCGAGCTGATGGACCAAGCAGTAGTGGAGACAAATGCCTCTCAAATTAAACGTAACCGTGAAGCGCAACATCGATATCTAACTTGGAGAGCAGAAAAGGATCCTGGACATGGAGTTCTGAAAAGGTTGATTGGGGAGACACAAGCAAAGGATTTGCTGGTGAACTTCCTGTTCAATGGAATTGATAAACTAGGAAGCAAAAGTTTCCTGGAGTACTTTCCCGAGTACTGCTGTGAGGATGGGACTATAAATCACAAACGTAGTATAATTGGAAAGTCTTATGAAAGTCGCCCGTGGGATAGAAAAGGAGAGTTTGTTAGTAGCAATTTTGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

336

Amino Acids

38.81

Weight (kDa)

8.74

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	64 - 283	1.9e-57	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	334
AccB7I	CCANNNNNTGG	1 cut(s)	548
AciI	CCGC	5 cut(s)	96, 124, 147, 199, 419
AclI	AACGTT	1 cut(s)	462
AclWI	GGATC	2 cut(s)	767, 780
AcsI	RAATTY	3 cut(s)	164, 377, 575
AfaI	GTAC	3 cut(s)	84, 887, 899
AfiI	CCNNNNNNNGG	3 cut(s)	105, 548, 782
AgsI	TTSAA	6 cut(s)	275, 289, 473, 574, 847, 1004
AjnI	CCWGG	3 cut(s)	225, 775, 879
AloI	GAACNNNNNNTCC	2 cut(s)	771, 803
AluBI	AGCT	5 cut(s)	51, 293, 535, 556, 679
AluI	AGCT	5 cut(s)	51, 293, 535, 556, 679
Alw26I	GTCTC	3 cut(s)	323, 695, 803
AlwI	GGATC	2 cut(s)	767, 780
Ama87I	CYCGRG	2 cut(s)	674, 893
AoxI	GGCC	2 cut(s)	210, 502
ApeKI	GCWGC	5 cut(s)	48, 112, 115, 118, 121
ApoI	RAATTY	3 cut(s)	164, 377, 575
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	3 cut(s)	211, 442, 685
AsuHPI	GGTGA	3 cut(s)	403, 576, 844
AvaI	CYCGRG	2 cut(s)	674, 893
AvaII	GGWCC	2 cut(s)	442, 685
BamHI	GGATCC	1 cut(s)	772
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	5 cut(s)	60, 124, 127, 130, 133
BccI	CCATC	3 cut(s)	251, 676, 905
BceAI	ACGGC	2 cut(s)	83, 134
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	3 cut(s)	227, 777, 881
BcoDI	GTCTC	3 cut(s)	323, 695, 803
BfaI	CTAG	2 cut(s)	561, 863
BfuAI	ACCTGC	1 cut(s)	334
BisI	GCNGC	7 cut(s)	49, 113, 116, 119, 122, 125, 199
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	7 cut(s)	50, 114, 117, 120, 123, 126, 200
BmcAI	AGTACT	2 cut(s)	887, 899
Bme1390I	CCNGG	3 cut(s)	227, 777, 881
Bme18I	GGWCC	2 cut(s)	442, 685
BmeT110I	CYCGRG	2 cut(s)	674, 893
BmgT120I	GGNCC	3 cut(s)	211, 442, 685
BmiI	GGNNCC	2 cut(s)	213, 774
BmrFI	CCNGG	3 cut(s)	227, 777, 881
BpiI	GAAGAC	1 cut(s)	355
BpmI	CTGGAG	2 cut(s)	209, 902
Bpu1102I	GCTNAGC	1 cut(s)	531
Bsa29I	ATCGAT	1 cut(s)	745
BsaAI	YACGTR	1 cut(s)	314
BsaJI	CCNNGG	4 cut(s)	243, 252, 542, 965
BsaXI	ACNNNNNCTCC	2 cut(s)	972, 1002
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 548, 782
Bse1I	ACTGG	1 cut(s)	414
BseBI	CCWGG	3 cut(s)	227, 777, 881
BseCI	ATCGAT	1 cut(s)	745
BseDI	CCNNGG	4 cut(s)	243, 252, 542, 965
BseGI	GGATG	5 cut(s)	190, 262, 281, 427, 916
BseLI	CCNNNNNNNGG	3 cut(s)	105, 548, 782
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	5 cut(s)	60, 124, 127, 130, 133
BshFI	GGCC	2 cut(s)	212, 504
BshVI	ATCGAT	1 cut(s)	745
BsiHKCI	CYCGRG	2 cut(s)	674, 893
BslFI	GGGAC	1 cut(s)	928
BslI	CCNNNNNNNGG	3 cut(s)	105, 548, 782
BsmAI	GTCTC	3 cut(s)	323, 695, 803
BsmFI	GGGAC	1 cut(s)	928
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	212, 504
BsoBI	CYCGRG	2 cut(s)	674, 893
Bsp143I	GATC	1 cut(s)	772
Bsp1720I	GCTNAGC	1 cut(s)	531
Bsp19I	CCATGG	3 cut(s)	243, 252, 542
BspACI	CCGC	5 cut(s)	96, 124, 147, 199, 419
BspANI	GGCC	2 cut(s)	212, 504
BspCNI	CTCAG	1 cut(s)	523
BspDI	ATCGAT	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	213, 774
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	2 cut(s)	767, 780
BspQI	GCTCTTC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	4 cut(s)	243, 252, 542, 965
BssMI	GATC	1 cut(s)	772
BssT1I	CCWWGG	3 cut(s)	243, 252, 542
Bst2UI	CCWGG	3 cut(s)	227, 777, 881
Bst4CI	ACNGT	1 cut(s)	731
Bst6I	CTCTTC	2 cut(s)	16, 43
BstBAI	YACGTR	1 cut(s)	314
BstDEI	CTNAG	2 cut(s)	297, 531
BstDSI	CCRYGG	4 cut(s)	243, 252, 542, 965
BstF5I	GGATG	5 cut(s)	190, 262, 281, 427, 916
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	1 cut(s)	775
BstMAI	GTCTC	3 cut(s)	323, 695, 803
BstMBI	GATC	1 cut(s)	772
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 121, 124
BstNI	CCWGG	3 cut(s)	227, 777, 881
BstSCI	CCNGG	3 cut(s)	225, 775, 879
BstSNI	TACGTA	1 cut(s)	314
BstV1I	GCAGC	5 cut(s)	60, 124, 127, 130, 133
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	772
BstYI	RGATCY	1 cut(s)	772
Bsu15I	ATCGAT	1 cut(s)	745
BsuRI	GGCC	2 cut(s)	212, 504
BsuTUI	ATCGAT	1 cut(s)	745
BtgI	CCRYGG	4 cut(s)	243, 252, 542, 965
BtsCI	GGATG	5 cut(s)	190, 262, 281, 427, 916
BtsIMutI	CAGTG	1 cut(s)	421
BveI	ACCTGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	3 cut(s)	211, 442, 685
ClaI	ATCGAT	1 cut(s)	745
Csp6I	GTAC	3 cut(s)	83, 886, 898
CviAII	CATG	6 cut(s)	244, 253, 543, 652, 669, 782
CviQI	GTAC	3 cut(s)	83, 886, 898
DdeI	CTNAG	2 cut(s)	297, 531
DpnI	GATC	1 cut(s)	774
DpnII	GATC	1 cut(s)	772
Eam1104I	CTCTTC	2 cut(s)	16, 43
EarI	CTCTTC	2 cut(s)	16, 43
EciI	GGCGGA	1 cut(s)	136
Eco105I	TACGTA	1 cut(s)	314
Eco130I	CCWWGG	3 cut(s)	243, 252, 542
Eco147I	AGGCCT	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	749
Eco47I	GGWCC	2 cut(s)	442, 685
Eco88I	CYCGRG	2 cut(s)	674, 893
EcoRII	CCWGG	3 cut(s)	225, 775, 879
EcoRV	GATATC	1 cut(s)	749
EcoT14I	CCWWGG	3 cut(s)	243, 252, 542
ErhI	CCWWGG	3 cut(s)	243, 252, 542
FaeI	CATG	6 cut(s)	247, 256, 546, 655, 672, 785
FaqI	GGGAC	1 cut(s)	928
FatI	CATG	6 cut(s)	243, 252, 542, 651, 668, 781
Fnu4HI	GCNGC	7 cut(s)	49, 113, 116, 119, 122, 125, 199
FokI	GGATG	5 cut(s)	197, 268, 269, 434, 923
Fsp4HI	GCNGC	7 cut(s)	49, 113, 116, 119, 122, 125, 199
FspBI	CTAG	2 cut(s)	561, 863
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	7 cut(s)	49, 113, 116, 119, 122, 125, 199
GsuI	CTGGAG	2 cut(s)	209, 902
HaeIII	GGCC	2 cut(s)	212, 504
HhaI	GCGC	1 cut(s)	739
Hin1II	CATG	6 cut(s)	247, 256, 546, 655, 672, 785
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	3 cut(s)	188, 331, 566
HphI	GGTGA	3 cut(s)	403, 576, 844
Hpy166II	GTNNAC	2 cut(s)	427, 835
Hpy188I	TCNGA	1 cut(s)	792
Hpy188III	TCNNGA	2 cut(s)	620, 893
Hpy8I	GTNNAC	2 cut(s)	427, 835
HpyAV	CCTTC	2 cut(s)	225, 295
HpyCH4III	ACNGT	1 cut(s)	731
HpyCH4IV	ACGT	5 cut(s)	313, 462, 611, 724, 931
HpyCH4V	TGCA	3 cut(s)	266, 343, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 121, 124
HpyF3I	CTNAG	2 cut(s)	297, 531
HpySE526I	ACGT	5 cut(s)	313, 462, 611, 724, 931
Hsp92II	CATG	6 cut(s)	247, 256, 546, 655, 672, 785
HspAI	GCGC	1 cut(s)	737
Kzo9I	GATC	1 cut(s)	772
LguI	GCTCTTC	1 cut(s)	16
Lsp1109I	GCAGC	5 cut(s)	60, 124, 127, 130, 133
MaeI	CTAG	2 cut(s)	561, 863
MaeII	ACGT	5 cut(s)	313, 462, 611, 724, 931
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	1 cut(s)	774
MboI	GATC	1 cut(s)	772
MflI	RGATCY	1 cut(s)	772
MluCI	AATT	8 cut(s)	164, 238, 377, 575, 717, 852, 939, 997
MlyI	GAGTC	2 cut(s)	325, 575
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	7 cut(s)	46, 233, 455, 522, 625, 721, 901
MseI	TTAA	2 cut(s)	44, 720
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	124
MspR9I	CCNGG	3 cut(s)	227, 777, 881
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	3 cut(s)	227, 777, 881
MwoI	GCNNNNNNNGC	3 cut(s)	118, 121, 124
NcoI	CCATGG	3 cut(s)	243, 252, 542
NdeII	GATC	1 cut(s)	772
NlaIII	CATG	6 cut(s)	247, 256, 546, 655, 672, 785
NlaIV	GGNNCC	2 cut(s)	213, 774
PaeR7I	CTCGAG	1 cut(s)	674
PceI	AGGCCT	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	548
PfoI	TCCNGGA	3 cut(s)	225, 775, 879
PkrI	GCNGC	7 cut(s)	50, 114, 117, 120, 123, 126, 200
PleI	GAGTC	2 cut(s)	325, 574
PpsI	GAGTC	2 cut(s)	325, 574
Ppu21I	YACGTR	1 cut(s)	314
Psp1406I	AACGTT	1 cut(s)	462
Psp6I	CCWGG	3 cut(s)	225, 775, 879
PspGI	CCWGG	3 cut(s)	225, 775, 879
PspN4I	GGNNCC	2 cut(s)	213, 774
PspPI	GGNCC	3 cut(s)	211, 442, 685
PspXI	VCTCGAGB	1 cut(s)	674
PsuI	RGATCY	1 cut(s)	772
RsaI	GTAC	3 cut(s)	84, 887, 899
RsaNI	GTAC	3 cut(s)	83, 886, 898
RseI	CAYNNNNRTG	1 cut(s)	434
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	44, 720
SatI	GCNGC	7 cut(s)	49, 113, 116, 119, 122, 125, 199
Sau3AI	GATC	1 cut(s)	772
Sau96I	GGNCC	3 cut(s)	211, 442, 685
ScaI	AGTACT	2 cut(s)	887, 899
SchI	GAGTC	2 cut(s)	325, 575
ScrFI	CCNGG	3 cut(s)	227, 777, 881
Sfr274I	CTCGAG	1 cut(s)	674
SinI	GGWCC	2 cut(s)	442, 685
SlaI	CTCGAG	1 cut(s)	674
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SnaBI	TACGTA	1 cut(s)	314
Sse9I	AATT	8 cut(s)	164, 238, 377, 575, 717, 852, 939, 997
SseBI	AGGCCT	1 cut(s)	504
SsiI	CCGC	5 cut(s)	96, 124, 147, 199, 419
SspMI	CTAG	2 cut(s)	561, 863
StuI	AGGCCT	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	225, 775, 879
StyI	CCWWGG	3 cut(s)	243, 252, 542
TaaI	ACNGT	1 cut(s)	731
TaiI	ACGT	5 cut(s)	316, 465, 614, 727, 934
TaqI	TCGA	3 cut(s)	334, 675, 745
TasI	AATT	8 cut(s)	164, 238, 377, 575, 717, 852, 939, 997
TatI	WGTACW	2 cut(s)	885, 897
TauI	GCSGC	2 cut(s)	127, 201
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	44, 720
Tru9I	TTAA	2 cut(s)	44, 720
TscAI	CASTG	1 cut(s)	421
TseI	GCWGC	5 cut(s)	48, 112, 115, 118, 121
TspDTI	ATGAA	4 cut(s)	157, 201, 640, 969
TspRI	CASTG	1 cut(s)	421
Van91I	CCANNNNNTGG	1 cut(s)	548
VpaK11BI	GGWCC	2 cut(s)	442, 685
XapI	RAATTY	3 cut(s)	164, 377, 575
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	674
XspI	CTAG	2 cut(s)	561, 863
ZrmI	AGTACT	2 cut(s)	887, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.