Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037809.1

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1625

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 439 bp

ggacctcaaccctttgcacaacgttattattgaaagagaatacagagataaatactacaaaggcctaatacctcttggtgtcaaatatgctgagcttttaccatggggtgggaagcttactagcgagtcattgaaatttttttcacccattgttatatggacaagatttacgtcaagtccagaaaaatatgaggttttatattcggctttcatggattattacaaggcatggctcgagctgatggaccaagcagtagtggagacaaatgcctctcaaattaaacgtaaccgtgaagcgcaacatcgatatctaacttggagagcagaaaaggatcttaaaatagatcttctctctgcaaaacagtgctattgtggaattcctaaagggatggtctaccttttatggaagttcattatctttaagctgtaccaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

145

Amino Acids

17.32

Weight (kDa)

9.21

Isoelectric Point (pI)

23.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	394
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	135, 376
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	2 cut(s)	33, 134
AluBI	AGCT	4 cut(s)	95, 116, 239, 425
AluI	AGCT	4 cut(s)	95, 116, 239, 425
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	340
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	1 cut(s)	62
ApoI	RAATTY	2 cut(s)	135, 376
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	2 cut(s)	2, 245
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	234
AvaII	GGWCC	2 cut(s)	2, 245
BccI	CCATC	2 cut(s)	236, 383
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	121
BglII	AGATCT	1 cut(s)	344
BlpI	GCTNAGC	1 cut(s)	91
Bme18I	GGWCC	2 cut(s)	2, 245
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	2, 245
Bpu1102I	GCTNAGC	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseCI	ATCGAT	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	332, 344
Bsp1720I	GCTNAGC	1 cut(s)	91
Bsp19I	CCATGG	1 cut(s)	102
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	83
BspDI	ATCGAT	1 cut(s)	305
BspPI	GGATC	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	2 cut(s)	332, 344
BssT1I	CCWWGG	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	291, 364
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	2 cut(s)	335, 347
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	2 cut(s)	332, 344
BstX2I	RGATCY	2 cut(s)	332, 344
BstYI	RGATCY	2 cut(s)	332, 344
Bsu15I	ATCGAT	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	64
BsuTUI	ATCGAT	1 cut(s)	305
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	369
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	2, 245
ClaI	ATCGAT	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	3 cut(s)	103, 212, 229
CviJI	RGCY	7 cut(s)	64, 95, 116, 207, 233, 239, 425
CviKI_1	RGCY	7 cut(s)	64, 95, 116, 207, 233, 239, 425
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	2 cut(s)	334, 346
DpnII	GATC	2 cut(s)	332, 344
Eco130I	CCWWGG	1 cut(s)	102
Eco147I	AGGCCT	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	2, 245
Eco88I	CYCGRG	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	3 cut(s)	106, 215, 232
FaiI	YATR	9 cut(s)	88, 104, 156, 158, 190, 200, 213, 230, 404
FatI	CATG	3 cut(s)	102, 211, 228
FblI	GTMKAC	1 cut(s)	394
FokI	GGATG	1 cut(s)	401
FspBI	CTAG	1 cut(s)	121
GlaI	GCGC	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	106, 215, 232
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	1 cut(s)	126
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188III	TCNNGA	1 cut(s)	180
Hpy8I	GTNNAC	1 cut(s)	395
HpyCH4III	ACNGT	2 cut(s)	291, 364
HpyCH4IV	ACGT	3 cut(s)	22, 171, 284
HpyCH4V	TGCA	2 cut(s)	17, 357
HpyF3I	CTNAG	1 cut(s)	91
HpySE526I	ACGT	3 cut(s)	22, 171, 284
Hsp92II	CATG	3 cut(s)	106, 215, 232
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	332, 344
LpnPI	CCDG	1 cut(s)	193
MaeI	CTAG	1 cut(s)	121
MaeII	ACGT	3 cut(s)	22, 171, 284
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	2 cut(s)	334, 346
MboI	GATC	2 cut(s)	332, 344
MboII	GAAGA	1 cut(s)	339
MflI	RGATCY	2 cut(s)	332, 344
MluCI	AATT	3 cut(s)	135, 277, 376
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	15, 82, 185, 281
MseI	TTAA	3 cut(s)	280, 337, 421
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	332, 344
NlaIII	CATG	3 cut(s)	106, 215, 232
PaeR7I	CTCGAG	1 cut(s)	234
PceI	AGGCCT	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	108
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp1406I	AACGTT	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	2, 245
PspXI	VCTCGAGB	1 cut(s)	234
PsuI	RGATCY	2 cut(s)	332, 344
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	280, 337, 421
Sau3AI	GATC	2 cut(s)	332, 344
Sau96I	GGNCC	2 cut(s)	2, 245
SchI	GAGTC	1 cut(s)	135
Sfr274I	CTCGAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	2, 245
SlaI	CTCGAG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	135, 277, 376
SseBI	AGGCCT	1 cut(s)	64
SspMI	CTAG	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	291, 364
TaiI	ACGT	3 cut(s)	25, 174, 287
TaqI	TCGA	2 cut(s)	235, 305
TasI	AATT	3 cut(s)	135, 277, 376
Tru1I	TTAA	3 cut(s)	280, 337, 421
Tru9I	TTAA	3 cut(s)	280, 337, 421
TscAI	CASTG	1 cut(s)	369
TspDTI	ATGAA	2 cut(s)	200, 401
TspRI	CASTG	1 cut(s)	369
Van91I	CCANNNNNTGG	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	2, 245
XapI	RAATTY	2 cut(s)	135, 376
XhoI	CTCGAG	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	394
XspI	CTAG	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.