Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Reverse (-)

18389913 .. 18395626

Gene Structure 5714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G258500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAATGTTGTTCTTCTTTAAGCTTTTGCGTACCCAAAAGACCTTTACCATTAATCAGAACTGCATTATTTAGTAGCATTTGCAGTAGCAGTAGGAAGCAGCAGATGCCCATTGTCCAACTCTCTGCAATTTCTTACAAAAAATTCATTAACTCTGCTTTGGATGAAACCAAACGCCACACCCATTTGGCACCTTCTCCCTTGCAGGAAAGATATAATTCTAGGATCTCAATGGATGGTAAATCAGAGATTGAAATGTTGTCATTCGAAGCTACTAAAGTTAGGCTTCTGCGTAGCCTTTGCATTGAGAGTCAAACAATGCAGGTTTTGGATTTTGCTGTCTTCCCAGAACCAGAATTTGATATGCCCATATTTTGTGCCAACTTCTTCAGCAGTGCAAATACGAACATAGTTGTTCTGGACCTCAATCCCTTGCATGATGTCATCAGTCAAAGAGATTACAAAGAAAAATACTATAAAGGCCTAATACCTCTTGGCCTTAAATATGCTGAGCTTTTACCCTGGGGAGGAAAGCTTACTAGCGAGTCATTAAAATTTTTTTCACCAATTGTGATATGGACAAGATTTACATCAAGCTCCTACAAATATGATGTTTTATATTCTGCATTCATGGATTATTACAAGGCGTGGCTTGAGCTGATGGACCAAGCAGTAGTGGAGACAAATGCCTCTAAAATTATGTGTAACCGTGAAGCACAACATAGATATCTAACATGGAGAGCAGAGAAGGATCCTGGGCATGGACTTCTAAAAAAGTTGATTGGGGAGACACAAGCAAAGGACTTGCTGGTGAACTTCCTCTTTAATGGAATTGATGAACTAGGAAGCAAAAGCTTCCTAGATTACTTTCCTGAGTACTGCTGCGAGGACGGGACTATAAATCAGAGTCGCAGTATAATTGGAAAGTCTTTTGAAAGTCGCCCTTGGGATGGGAAAGGAGAATTTATTAGTAACAGTTTTGAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

330

Amino Acids

37.76

Weight (kDa)

6.55

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	190
AclWI	GGATC	3 cut(s)	233, 746, 759
AcsI	RAATTY	4 cut(s)	143, 356, 554, 962
AcuI	CTGAAG	1 cut(s)	373
AfaI	GTAC	2 cut(s)	33, 878
AfiI	CCNNNNNNNGG	3 cut(s)	527, 761, 950
AgsI	TTSAA	3 cut(s)	254, 935, 983
AjnI	CCWGG	2 cut(s)	521, 754
AluBI	AGCT	7 cut(s)	24, 272, 514, 535, 597, 658, 855
AluI	AGCT	7 cut(s)	24, 272, 514, 535, 597, 658, 855
Alw26I	GTCTC	2 cut(s)	674, 782
AlwI	GGATC	3 cut(s)	233, 746, 759
AoxI	GGCC	2 cut(s)	481, 496
ApeKI	GCWGC	2 cut(s)	100, 882
ApoI	RAATTY	4 cut(s)	143, 356, 554, 962
AseI	ATTAAT	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	421, 664
AsuHPI	GGTGA	2 cut(s)	555, 823
AsuII	TTCGAA	1 cut(s)	267
AvaII	GGWCC	2 cut(s)	421, 664
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	112, 869
BccI	CCATC	3 cut(s)	230, 655, 944
BciT130I	CCWGG	2 cut(s)	523, 756
BcoDI	GTCTC	2 cut(s)	674, 782
BfaI	CTAG	4 cut(s)	222, 540, 842, 860
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	101, 883
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	2 cut(s)	102, 884
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	2 cut(s)	523, 756
Bme18I	GGWCC	2 cut(s)	421, 664
BmgT120I	GGNCC	2 cut(s)	421, 664
BmiI	GGNNCC	2 cut(s)	192, 753
BmrFI	CCNGG	2 cut(s)	523, 756
BmsI	GCATC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	334
Bpu1102I	GCTNAGC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	589
BsaJI	CCNNGG	4 cut(s)	521, 522, 755, 944
Bsc4I	CCNNNNNNNGG	3 cut(s)	527, 761, 950
Bse8I	GATNNNNATC	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	523, 756
BseDI	CCNNGG	4 cut(s)	521, 522, 755, 944
BseGI	GGATG	3 cut(s)	169, 241, 955
BseJI	GATNNNNATC	1 cut(s)	589
BseLI	CCNNNNNNNGG	3 cut(s)	527, 761, 950
BseMII	CTCAG	2 cut(s)	501, 864
BseXI	GCAGC	2 cut(s)	112, 869
BshFI	GGCC	2 cut(s)	483, 498
BshNI	GGYRCC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	907
BslI	CCNNNNNNNGG	3 cut(s)	527, 761, 950
BsmAI	GTCTC	2 cut(s)	674, 782
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	483, 498
Bsp119I	TTCGAA	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	225, 751
Bsp1720I	GCTNAGC	1 cut(s)	510
BspANI	GGCC	2 cut(s)	483, 498
BspCNI	CTCAG	2 cut(s)	502, 865
BspLI	GGNNCC	2 cut(s)	192, 753
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	3 cut(s)	233, 746, 759
BspT104I	TTCGAA	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	190
BssECI	CCNNGG	4 cut(s)	521, 522, 755, 944
BssMI	GATC	2 cut(s)	225, 751
BssT1I	CCWWGG	1 cut(s)	944
Bst2UI	CCWGG	2 cut(s)	523, 756
Bst4CI	ACNGT	2 cut(s)	710, 977
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	510, 873
BstF5I	GGATG	3 cut(s)	169, 241, 955
BstKTI	GATC	2 cut(s)	228, 754
BstMAI	GTCTC	2 cut(s)	674, 782
BstMBI	GATC	2 cut(s)	225, 751
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	2 cut(s)	523, 756
BstSCI	CCNGG	2 cut(s)	521, 754
BstV1I	GCAGC	2 cut(s)	112, 869
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	2 cut(s)	225, 751
BstYI	RGATCY	2 cut(s)	225, 751
BsuRI	GGCC	2 cut(s)	483, 498
BtsCI	GGATG	3 cut(s)	169, 241, 955
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	400
BveI	ACCTGC	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	421, 664
Csp6I	GTAC	2 cut(s)	32, 877
CviAII	CATG	4 cut(s)	437, 631, 735, 761
CviQI	GTAC	2 cut(s)	32, 877
DdeI	CTNAG	2 cut(s)	510, 873
DpnI	GATC	2 cut(s)	227, 753
DpnII	GATC	2 cut(s)	225, 751
Eco130I	CCWWGG	1 cut(s)	944
Eco147I	AGGCCT	1 cut(s)	483
Eco32I	GATATC	1 cut(s)	728
Eco47I	GGWCC	2 cut(s)	421, 664
Eco57I	CTGAAG	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	521, 754
EcoRV	GATATC	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	944
ErhI	CCWWGG	1 cut(s)	944
FaeI	CATG	4 cut(s)	440, 634, 738, 764
FalI	AAGNNNNNCTT	4 cut(s)	270, 302, 928, 960
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	4 cut(s)	436, 630, 734, 760
Fnu4HI	GCNGC	2 cut(s)	101, 883
FokI	GGATG	3 cut(s)	176, 248, 962
Fsp4HI	GCNGC	2 cut(s)	101, 883
FspBI	CTAG	4 cut(s)	222, 540, 842, 860
GluI	GCNGC	2 cut(s)	101, 883
HaeIII	GGCC	2 cut(s)	483, 498
Hin1II	CATG	4 cut(s)	440, 634, 738, 764
HindIII	AAGCTT	3 cut(s)	22, 533, 853
HinfI	GANTC	3 cut(s)	310, 545, 907
HphI	GGTGA	2 cut(s)	555, 823
Hpy166II	GTNNAC	1 cut(s)	814
Hpy188I	TCNGA	3 cut(s)	59, 247, 906
Hpy188III	TCNNGA	2 cut(s)	419, 872
Hpy8I	GTNNAC	1 cut(s)	814
HpyAV	CCTTC	2 cut(s)	204, 742
HpyCH4III	ACNGT	2 cut(s)	710, 977
HpyCH4V	TGCA	9 cut(s)	65, 84, 128, 205, 303, 322, 398, 436, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	510, 873
Hsp92II	CATG	4 cut(s)	440, 634, 738, 764
Kzo9I	GATC	2 cut(s)	225, 751
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	2 cut(s)	112, 869
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	4 cut(s)	222, 540, 842, 860
MaeIII	GTNAC	2 cut(s)	704, 971
MalI	GATC	2 cut(s)	227, 753
MboI	GATC	2 cut(s)	225, 751
MboII	GAAGA	3 cut(s)	6, 334, 379
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	2 cut(s)	225, 751
MlyI	GAGTC	3 cut(s)	319, 554, 916
MmeI	TCCRAC	1 cut(s)	142
MnlI	CCTC	6 cut(s)	434, 501, 521, 700, 830, 880
MseI	TTAA	6 cut(s)	20, 53, 150, 501, 551, 825
MspR9I	CCNGG	2 cut(s)	523, 756
MunI	CAATTG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	626
MvaI	CCWGG	2 cut(s)	523, 756
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	2 cut(s)	225, 751
NlaIII	CATG	4 cut(s)	440, 634, 738, 764
NlaIV	GGNNCC	2 cut(s)	192, 753
NspV	TTCGAA	1 cut(s)	267
PasI	CCCWGGG	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	483
PctI	GAATGC	1 cut(s)	626
PkrI	GCNGC	2 cut(s)	102, 884
PleI	GAGTC	3 cut(s)	318, 553, 915
PpsI	GAGTC	3 cut(s)	318, 553, 915
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	521, 754
PspGI	CCWGG	2 cut(s)	521, 754
PspN4I	GGNNCC	2 cut(s)	192, 753
PspPI	GGNCC	2 cut(s)	421, 664
PsuI	RGATCY	2 cut(s)	225, 751
RsaI	GTAC	2 cut(s)	33, 878
RsaNI	GTAC	2 cut(s)	32, 877
SaqAI	TTAA	6 cut(s)	20, 53, 150, 501, 551, 825
SatI	GCNGC	2 cut(s)	101, 883
Sau3AI	GATC	2 cut(s)	225, 751
Sau96I	GGNCC	2 cut(s)	421, 664
ScaI	AGTACT	1 cut(s)	878
SchI	GAGTC	3 cut(s)	319, 554, 916
ScrFI	CCNGG	2 cut(s)	523, 756
SfaNI	GCATC	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	267
SinI	GGWCC	2 cut(s)	421, 664
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SseBI	AGGCCT	1 cut(s)	483
SspMI	CTAG	4 cut(s)	222, 540, 842, 860
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	2 cut(s)	521, 754
StyI	CCWWGG	1 cut(s)	944
TaaI	ACNGT	2 cut(s)	710, 977
TaqI	TCGA	1 cut(s)	267
TatI	WGTACW	1 cut(s)	876
Tru1I	TTAA	6 cut(s)	20, 53, 150, 501, 551, 825
Tru9I	TTAA	6 cut(s)	20, 53, 150, 501, 551, 825
TscAI	CASTG	1 cut(s)	400
TseI	GCWGC	2 cut(s)	100, 882
TspDTI	ATGAA	4 cut(s)	136, 180, 619, 852
TspRI	CASTG	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	421, 664
VspI	ATTAAT	1 cut(s)	53
XapI	RAATTY	4 cut(s)	143, 356, 554, 962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	573
XspI	CTAG	4 cut(s)	222, 540, 842, 860
ZrmI	AGTACT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.