Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Forward (+)

54079108 .. 54083920

Gene Structure 4813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG336300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAATGCTCATCTTCTTCTTCTTCCTCTTCTTTAAGCAGCTTTTCCATACTGCGAAAGCCTTGCCCATTTGTACCACCATTTACCACCGTTTATAGGAAGCAGCAGCAGCGGCGACCCCTTATCCAACTCTCCGCAGTTTCTTACAACAAATTCATTCACTTCGCTTTGGATGAATCCAAACGCCGCACCCATTTGGCCCCTTCTCCCCTCCAGGAAAGATATAATTCCATGGTTTCCATGGATGGTAATGCAGAACTTCAAATGTCATCATTCAAAGCTACTAAGATTAGGCTTTTACGTAGCCTATGTATTGAGACTCAAACAATGCAGGTTTTGGATTTTGCTGTCTTCCCAGAACCAGAATTTGATATGCCAATATTTTGTGCCAACTTCTTCACCAGTGCGGATGTCAACATAGTTGTGCTGGACCTCAACCCTTTGCACAATGTTATTATTGAAAGAGAATACAGAGATAAATACTACAAAGGCCTAATACCTCTTGGTGTCAAATATGCTGAGCTTTTACCATGGGGTGGGAAGCTTACTAGCGAGTCATTGAAATTTTTTTCACCCATTGTTATATGGACAAGATTTACGTCAAGTCCAGAAAAATATGAGGTTTTATATTCGGCTTTCATGGATTATTACAAGGCATGGCTCGAGCTGATGGACCAAGCAGTAGTGGAGACAAATGCCTCTCAAATTAAACGTAACCGTGAAGCGCAACATCGATATCTAACTTGGAGAGCAGAAAAGGTGATTACCATGTTTGCCTGTTTTTTTTCTTCCATACATCCCGCCATCTCTATGAATTTCTTGTTGTTTCTTATAGGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

280

Amino Acids

32.42

Weight (kDa)

8.87

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	60 - 262	3.9e-48	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	5 cut(s)	112, 135, 187, 407, 801
AcsI	RAATTY	4 cut(s)	152, 365, 563, 814
AfaI	GTAC	1 cut(s)	75
AfiI	CCNNNNNNNGG	2 cut(s)	96, 536
AgsI	TTSAA	4 cut(s)	263, 277, 461, 562
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	5 cut(s)	42, 281, 523, 544, 667
AluI	AGCT	5 cut(s)	42, 281, 523, 544, 667
Alw26I	GTCTC	2 cut(s)	311, 683
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	2 cut(s)	198, 490
ApeKI	GCWGC	4 cut(s)	39, 103, 106, 109
ApoI	RAATTY	4 cut(s)	152, 365, 563, 814
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	4 cut(s)	199, 430, 673, 836
AsuHPI	GGTGA	3 cut(s)	391, 564, 772
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	3 cut(s)	430, 673, 836
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	4 cut(s)	51, 115, 118, 121
BccI	CCATC	3 cut(s)	239, 664, 812
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	311, 683
BfaI	CTAG	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 187
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	6 cut(s)	41, 105, 108, 111, 114, 188
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	3 cut(s)	430, 673, 836
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	4 cut(s)	199, 430, 673, 836
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	197
Bpu1102I	GCTNAGC	1 cut(s)	519
Bsa29I	ATCGAT	1 cut(s)	733
BsaAI	YACGTR	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	231, 240, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 536
Bse1I	ACTGG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	3 cut(s)	231, 240, 530
BseGI	GGATG	4 cut(s)	178, 250, 415, 796
BseLI	CCNNNNNNNGG	2 cut(s)	96, 536
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	1 cut(s)	402
BseXI	GCAGC	4 cut(s)	51, 115, 118, 121
BshFI	GGCC	2 cut(s)	200, 492
BshVI	ATCGAT	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	662
BslI	CCNNNNNNNGG	2 cut(s)	96, 536
BsmAI	GTCTC	2 cut(s)	311, 683
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	200, 492
BsoBI	CYCGRG	1 cut(s)	662
Bsp1720I	GCTNAGC	1 cut(s)	519
Bsp19I	CCATGG	3 cut(s)	231, 240, 530
BspACI	CCGC	5 cut(s)	112, 135, 187, 407, 801
BspANI	GGCC	2 cut(s)	200, 492
BspCNI	CTCAG	1 cut(s)	511
BspDI	ATCGAT	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	201
BspMI	ACCTGC	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	231, 240, 530
BssT1I	CCWWGG	3 cut(s)	231, 240, 530
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	91, 719
Bst6I	CTCTTC	1 cut(s)	34
BstBAI	YACGTR	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	285, 519
BstDSI	CCRYGG	3 cut(s)	231, 240, 530
BstF5I	GGATG	4 cut(s)	178, 250, 415, 796
BstHHI	GCGC	1 cut(s)	727
BstMAI	GTCTC	2 cut(s)	311, 683
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 112
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstSNI	TACGTA	1 cut(s)	302
BstV1I	GCAGC	4 cut(s)	51, 115, 118, 121
BstV2I	GAAGAC	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	200, 492
BsuTUI	ATCGAT	1 cut(s)	733
BtgI	CCRYGG	3 cut(s)	231, 240, 530
BtsCI	GGATG	4 cut(s)	178, 250, 415, 796
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	322
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	4 cut(s)	199, 430, 673, 836
ClaI	ATCGAT	1 cut(s)	733
Csp6I	GTAC	1 cut(s)	74
CviAII	CATG	6 cut(s)	232, 241, 531, 640, 657, 769
CviQI	GTAC	1 cut(s)	74
DdeI	CTNAG	2 cut(s)	285, 519
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco105I	TACGTA	1 cut(s)	302
Eco130I	CCWWGG	3 cut(s)	231, 240, 530
Eco147I	AGGCCT	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	737
Eco47I	GGWCC	3 cut(s)	430, 673, 836
Eco88I	CYCGRG	1 cut(s)	662
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	737
EcoT14I	CCWWGG	3 cut(s)	231, 240, 530
ErhI	CCWWGG	3 cut(s)	231, 240, 530
FaeI	CATG	6 cut(s)	235, 244, 534, 643, 660, 772
FatI	CATG	6 cut(s)	231, 240, 530, 639, 656, 768
FauI	CCCGC	1 cut(s)	808
Fnu4HI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 187
FokI	GGATG	4 cut(s)	185, 257, 422, 783
Fsp4HI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 187
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 187
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	200, 492
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	6 cut(s)	235, 244, 534, 643, 660, 772
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	176, 319, 554
HphI	GGTGA	3 cut(s)	391, 564, 772
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188III	TCNNGA	1 cut(s)	608
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	2 cut(s)	91, 719
HpyCH4IV	ACGT	3 cut(s)	301, 599, 712
HpyCH4V	TGCA	3 cut(s)	254, 331, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 112
HpyF3I	CTNAG	2 cut(s)	285, 519
HpySE526I	ACGT	3 cut(s)	301, 599, 712
Hsp92II	CATG	6 cut(s)	235, 244, 534, 643, 660, 772
HspAI	GCGC	1 cut(s)	725
LpnPI	CCDG	9 cut(s)	200, 227, 317, 369, 375, 413, 415, 621, 790
Lsp1109I	GCAGC	4 cut(s)	51, 115, 118, 121
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	3 cut(s)	301, 599, 712
MaeIII	GTNAC	1 cut(s)	713
MboII	GAAGA	8 cut(s)	6, 9, 12, 15, 21, 343, 388, 780
MluCI	AATT	6 cut(s)	152, 226, 365, 563, 705, 814
MlyI	GAGTC	2 cut(s)	313, 563
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	37, 221, 443, 510, 613, 709
MseI	TTAA	3 cut(s)	35, 708, 841
MslI	CAYNNNNRTG	2 cut(s)	422, 809
MspA1I	CMGCKG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	109, 112
NcoI	CCATGG	3 cut(s)	231, 240, 530
NlaIII	CATG	6 cut(s)	235, 244, 534, 643, 660, 772
NlaIV	GGNNCC	1 cut(s)	201
PaeR7I	CTCGAG	1 cut(s)	662
PceI	AGGCCT	1 cut(s)	492
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	6 cut(s)	41, 105, 108, 111, 114, 188
PleI	GAGTC	2 cut(s)	313, 562
PpsI	GAGTC	2 cut(s)	313, 562
Ppu21I	YACGTR	1 cut(s)	302
PpuMI	RGGWCCY	1 cut(s)	836
Psp5II	RGGWCCY	1 cut(s)	836
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	4 cut(s)	199, 430, 673, 836
PspPPI	RGGWCCY	1 cut(s)	836
PspXI	VCTCGAGB	1 cut(s)	662
RsaI	GTAC	1 cut(s)	75
RsaNI	GTAC	1 cut(s)	74
RseI	CAYNNNNRTG	2 cut(s)	422, 809
SaqAI	TTAA	3 cut(s)	35, 708, 841
SatI	GCNGC	6 cut(s)	40, 104, 107, 110, 113, 187
Sau96I	GGNCC	4 cut(s)	199, 430, 673, 836
SchI	GAGTC	2 cut(s)	313, 563
ScrFI	CCNGG	1 cut(s)	215
Sfr274I	CTCGAG	1 cut(s)	662
SinI	GGWCC	3 cut(s)	430, 673, 836
SlaI	CTCGAG	1 cut(s)	662
SmiMI	CAYNNNNRTG	2 cut(s)	422, 809
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SnaBI	TACGTA	1 cut(s)	302
Sse9I	AATT	6 cut(s)	152, 226, 365, 563, 705, 814
SseBI	AGGCCT	1 cut(s)	492
SsiI	CCGC	5 cut(s)	112, 135, 187, 407, 801
SspI	AATATT	1 cut(s)	381
SspMI	CTAG	1 cut(s)	549
StuI	AGGCCT	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	213
StyI	CCWWGG	3 cut(s)	231, 240, 530
TaaI	ACNGT	2 cut(s)	91, 719
TaiI	ACGT	3 cut(s)	304, 602, 715
TaqI	TCGA	2 cut(s)	663, 733
TasI	AATT	6 cut(s)	152, 226, 365, 563, 705, 814
TauI	GCSGC	2 cut(s)	115, 189
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	35, 708, 841
Tru9I	TTAA	3 cut(s)	35, 708, 841
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	4 cut(s)	39, 103, 106, 109
TspDTI	ATGAA	4 cut(s)	145, 189, 628, 827
TspRI	CASTG	1 cut(s)	409
Van91I	CCANNNNNTGG	1 cut(s)	536
VpaK11BI	GGWCC	3 cut(s)	430, 673, 836
XapI	RAATTY	4 cut(s)	152, 365, 563, 814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	662
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.