Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Forward (+)

13136155 .. 13141300

Gene Structure 5146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12530.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGAAGCATACGAGGTGGGGTCCATGTAGATTTCTGCTCACTACCACTTCTGTATTACCGGATAGAAGGGGTTTATTGAATTTTTATGGTTGCTGTTGGTGGTTGATTGCCTCAGTGCAAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTCAATGGAGTGTTCTTCTTCTCTAAGGTTTTGCATACCCAAAAAACCTTTGCCATCAATCAGCACTGTATTGTTCTCTAGTATTTGCAGCAGCAGCAGCAGGAAGCAGCAGAGACTCATTTCCCAACAACTCTCTGCAGTTTCTTACAAGAAATTCATTCACTTTGCTTTGGAGGAAACCAAACTCCACACCCATCTGGAACCTTCTCCCTTGCAGTCCTTTGTACGTCTTCAGGAAAGATATAATTCCAGGATTTCAATGGATGGTAAAGCAGATATTCAAATGTTATCATTCGAAGCTACTAAAATCAGACATCTACGAAGCTTATGCATTGAGAGCCAAACAATGCAGATTTTGGATTTTGCTGTCTTCCCAGAACCTGAATTTGATATGCCCATATTTTGTGCCAACTTCTTCACCAGTGCAAATATAAACATAGTCGTGTTGGACCTCAATCCGTTGCACGATGTAATCAGTCAAAGGCATTACAGAGACAAATACTATAAAAGCCTAATACCTCTTGGTGTTAAATATTCTGAGCTTTTACCCTGGGGAGGAAAGCTTACGAGCGAGTCACTTAAATTCTTTTCACCAATTGTGATATGGACAAGATTTACGTCAAGCCCCAAAAATTATGATGTTTTATATTCTGCATTCATGGATTATTACAAGGCATGGCTTGCGCTGATGGACCAAGCAGTAGTTGAGACAAATGCCTCCCAAATTATATATAACCGTGAAGCGCAACATAGATATCTAACATGGAGAGCAGAGAAGGATCCCGGACACGCACTACTGAAAAAGTTGATTGGGGAGACACAAGCTAAGGACTTGCTGGTGAACTTCCTCTTTAATGGAATTGATGAGCTAGGAAGCAAAACTTTCCTCGATTACTTTCCAGAGTACGGCTATGAGGATGGGACTGTAAACCAGAGTCGCAGTATGATAGGGAAATCTTTTGAAAGTCGTCCCTGGGATACAAAAGGAGAATTTATTAGTAACACAGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

388

Amino Acids

44.63

Weight (kDa)

8.64

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	923, 936
AcsI	RAATTY	5 cut(s)	79, 302, 533, 731, 1139
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	375, 1055
AfiI	CCNNNNNNNGG	2 cut(s)	704, 1055
AgsI	TTSAA	5 cut(s)	79, 153, 408, 431, 1112
AjnI	CCWGG	3 cut(s)	398, 698, 1121
AluBI	AGCT	6 cut(s)	449, 474, 691, 712, 974, 1018
AluI	AGCT	6 cut(s)	449, 474, 691, 712, 974, 1018
Alw26I	GTCTC	4 cut(s)	256, 636, 851, 959
AlwI	GGATC	2 cut(s)	923, 936
AlwNI	CAGNNNCTG	1 cut(s)	530
ApeKI	GCWGC	5 cut(s)	237, 240, 243, 246, 256
ApoI	RAATTY	5 cut(s)	79, 302, 533, 731, 1139
AspLEI	GCGC	2 cut(s)	835, 895
AspS9I	GGNCC	3 cut(s)	20, 598, 841
AsuC2I	CCSGG	1 cut(s)	933
AsuHPI	GGTGA	3 cut(s)	559, 732, 1000
AsuII	TTCGAA	1 cut(s)	444
AvaII	GGWCC	3 cut(s)	20, 598, 841
BamHI	GGATCC	1 cut(s)	928
BbsI	GAAGAC	2 cut(s)	371, 511
BbvI	GCAGC	5 cut(s)	249, 252, 255, 258, 268
BccI	CCATC	5 cut(s)	211, 351, 407, 832, 1061
BceAI	ACGGC	1 cut(s)	1072
BcgI	CGANNNNNNTGC	2 cut(s)	459, 493
BciT130I	CCWGG	3 cut(s)	400, 700, 1123
BciVI	GTATCC	1 cut(s)	1120
BcnI	CCSGG	1 cut(s)	933
BcoDI	GTCTC	4 cut(s)	256, 636, 851, 959
BfaI	CTAG	2 cut(s)	228, 1019
BfmI	CTRYAG	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	1120
BisI	GCNGC	5 cut(s)	238, 241, 244, 247, 257
BlsI	GCNGC	5 cut(s)	239, 242, 245, 248, 258
Bme1390I	CCNGG	4 cut(s)	400, 700, 933, 1123
Bme18I	GGWCC	3 cut(s)	20, 598, 841
BmgT120I	GGNCC	3 cut(s)	20, 598, 841
BmiI	GGNNCC	3 cut(s)	21, 351, 930
BmrFI	CCNGG	4 cut(s)	400, 700, 933, 1123
BpiI	GAAGAC	2 cut(s)	371, 511
Bpu10I	CCTNAGC	1 cut(s)	975
Bpu14I	TTCGAA	1 cut(s)	444
BpuMI	CCSGG	1 cut(s)	933
BsaJI	CCNNGG	4 cut(s)	698, 699, 1121, 1122
BsaWI	WCCGGW	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	704, 1055
Bse1I	ACTGG	1 cut(s)	570
BseBI	CCWGG	3 cut(s)	400, 700, 1123
BseDI	CCNNGG	4 cut(s)	698, 699, 1121, 1122
BseGI	GGATG	2 cut(s)	418, 1072
BseLI	CCNNNNNNNGG	2 cut(s)	704, 1055
BseMII	CTCAG	2 cut(s)	126, 678
BseNI	ACTGG	1 cut(s)	570
BseXI	GCAGC	5 cut(s)	249, 252, 255, 258, 268
BsiSI	CCGG	2 cut(s)	59, 933
BslFI	GGGAC	2 cut(s)	1084, 1104
BslI	CCNNNNNNNGG	2 cut(s)	704, 1055
BsmAI	GTCTC	4 cut(s)	256, 636, 851, 959
BsmFI	GGGAC	2 cut(s)	1084, 1104
BsmI	GAATGC	1 cut(s)	803
Bsp119I	TTCGAA	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	928
BspCNI	CTCAG	2 cut(s)	125, 679
BspLI	GGNNCC	3 cut(s)	21, 351, 930
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	2 cut(s)	923, 936
BspT104I	TTCGAA	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	4 cut(s)	698, 699, 1121, 1122
BssMI	GATC	1 cut(s)	928
Bst2UI	CCWGG	3 cut(s)	400, 700, 1123
Bst4CI	ACNGT	3 cut(s)	217, 887, 1075
Bst6I	CTCTTC	1 cut(s)	154
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	4 cut(s)	112, 173, 687, 975
BstF5I	GGATG	2 cut(s)	418, 1072
BstHHI	GCGC	2 cut(s)	835, 895
BstKTI	GATC	1 cut(s)	931
BstMAI	GTCTC	4 cut(s)	256, 636, 851, 959
BstMBI	GATC	1 cut(s)	928
BstMWI	GCNNNNNNNGC	4 cut(s)	243, 246, 486, 830
BstNI	CCWGG	3 cut(s)	400, 700, 1123
BstSCI	CCNGG	4 cut(s)	398, 698, 931, 1121
BstSFI	CTRYAG	1 cut(s)	285
BstV1I	GCAGC	5 cut(s)	249, 252, 255, 258, 268
BstV2I	GAAGAC	2 cut(s)	371, 511
BstX2I	RGATCY	1 cut(s)	928
BstYI	RGATCY	1 cut(s)	928
BsuI	GTATCC	1 cut(s)	1120
BtsCI	GGATG	2 cut(s)	418, 1072
BtsIMutI	CAGTG	3 cut(s)	120, 213, 577
Cac8I	GCNNGC	1 cut(s)	831
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	2 cut(s)	835, 895
Cfr13I	GGNCC	3 cut(s)	20, 598, 841
Csp6I	GTAC	2 cut(s)	374, 1054
CviAII	CATG	4 cut(s)	24, 808, 825, 912
CviQI	GTAC	2 cut(s)	374, 1054
DdeI	CTNAG	4 cut(s)	112, 173, 687, 975
DpnI	GATC	1 cut(s)	930
DpnII	GATC	1 cut(s)	928
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	905
Eco47I	GGWCC	3 cut(s)	20, 598, 841
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	3 cut(s)	398, 698, 1121
EcoRV	GATATC	1 cut(s)	905
EcoT22I	ATGCAT	1 cut(s)	482
FaeI	CATG	4 cut(s)	27, 811, 828, 915
FalI	AAGNNNNNCTT	2 cut(s)	1015, 1047
FaqI	GGGAC	2 cut(s)	1084, 1104
FatI	CATG	4 cut(s)	23, 807, 824, 911
Fnu4HI	GCNGC	5 cut(s)	238, 241, 244, 247, 257
FokI	GGATG	2 cut(s)	425, 1079
Fsp4HI	GCNGC	5 cut(s)	238, 241, 244, 247, 257
FspBI	CTAG	2 cut(s)	228, 1019
GlaI	GCGC	2 cut(s)	834, 894
GluI	GCNGC	5 cut(s)	238, 241, 244, 247, 257
HapII	CCGG	2 cut(s)	59, 933
HhaI	GCGC	2 cut(s)	835, 895
Hin1II	CATG	4 cut(s)	27, 811, 828, 915
Hin6I	GCGC	2 cut(s)	833, 893
HinP1I	GCGC	2 cut(s)	833, 893
HindIII	AAGCTT	2 cut(s)	472, 710
HinfI	GANTC	3 cut(s)	264, 722, 1084
HpaII	CCGG	2 cut(s)	59, 933
HphI	GGTGA	3 cut(s)	559, 732, 1000
Hpy166II	GTNNAC	2 cut(s)	991, 1078
Hpy188I	TCNGA	2 cut(s)	461, 688
Hpy188III	TCNNGA	3 cut(s)	347, 383, 1049
Hpy8I	GTNNAC	2 cut(s)	991, 1078
HpyAV	CCTTC	3 cut(s)	60, 363, 919
HpyCH4III	ACNGT	3 cut(s)	217, 887, 1075
HpyCH4IV	ACGT	2 cut(s)	376, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	243, 246, 486, 830
HpyF3I	CTNAG	4 cut(s)	112, 173, 687, 975
HpySE526I	ACGT	2 cut(s)	376, 767
Hsp92II	CATG	4 cut(s)	27, 811, 828, 915
HspAI	GCGC	2 cut(s)	833, 893
Kzo9I	GATC	1 cut(s)	928
Lsp1109I	GCAGC	5 cut(s)	249, 252, 255, 258, 268
MaeI	CTAG	2 cut(s)	228, 1019
MaeII	ACGT	2 cut(s)	376, 767
MaeIII	GTNAC	2 cut(s)	723, 1148
MalI	GATC	1 cut(s)	930
MboI	GATC	1 cut(s)	928
MboII	GAAGA	6 cut(s)	141, 156, 159, 371, 511, 556
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	928
MlyI	GAGTC	3 cut(s)	258, 731, 1093
MmeI	TCCRAC	1 cut(s)	576
Mph1103I	ATGCAT	1 cut(s)	482
MseI	TTAA	3 cut(s)	678, 729, 1002
MslI	CAYNNNNRTG	1 cut(s)	590
MspI	CCGG	2 cut(s)	59, 933
MspR9I	CCNGG	4 cut(s)	400, 700, 933, 1123
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	3 cut(s)	400, 700, 1123
MwoI	GCNNNNNNNGC	4 cut(s)	243, 246, 486, 830
NciI	CCSGG	1 cut(s)	933
NdeII	GATC	1 cut(s)	928
NlaIII	CATG	4 cut(s)	27, 811, 828, 915
NlaIV	GGNNCC	3 cut(s)	21, 351, 930
NmuCI	GTSAC	1 cut(s)	723
NsiI	ATGCAT	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	444
PasI	CCCWGGG	2 cut(s)	699, 1122
PctI	GAATGC	1 cut(s)	803
PfoI	TCCNGGA	2 cut(s)	398, 931
PkrI	GCNGC	5 cut(s)	239, 242, 245, 248, 258
PleI	GAGTC	3 cut(s)	258, 730, 1092
PpsI	GAGTC	3 cut(s)	258, 730, 1092
Psp6I	CCWGG	3 cut(s)	398, 698, 1121
PspGI	CCWGG	3 cut(s)	398, 698, 1121
PspN4I	GGNNCC	3 cut(s)	21, 351, 930
PspPI	GGNCC	3 cut(s)	20, 598, 841
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	928
RsaI	GTAC	2 cut(s)	375, 1055
RsaNI	GTAC	2 cut(s)	374, 1054
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	3 cut(s)	678, 729, 1002
SatI	GCNGC	5 cut(s)	238, 241, 244, 247, 257
Sau3AI	GATC	1 cut(s)	928
Sau96I	GGNCC	3 cut(s)	20, 598, 841
SchI	GAGTC	3 cut(s)	258, 731, 1093
ScrFI	CCNGG	4 cut(s)	400, 700, 933, 1123
SfcI	CTRYAG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	444
SinI	GGWCC	3 cut(s)	20, 598, 841
SmiMI	CAYNNNNRTG	1 cut(s)	590
SspI	AATATT	1 cut(s)	683
SspMI	CTAG	2 cut(s)	228, 1019
StyD4I	CCNGG	4 cut(s)	398, 698, 931, 1121
TaaI	ACNGT	3 cut(s)	217, 887, 1075
TaiI	ACGT	2 cut(s)	379, 770
TaqI	TCGA	2 cut(s)	444, 1038
Tru1I	TTAA	3 cut(s)	678, 729, 1002
Tru9I	TTAA	3 cut(s)	678, 729, 1002
TscAI	CASTG	3 cut(s)	120, 220, 577
TseFI	GTSAC	1 cut(s)	723
TseI	GCWGC	5 cut(s)	237, 240, 243, 246, 256
Tsp45I	GTSAC	1 cut(s)	723
TspDTI	ATGAA	3 cut(s)	17, 295, 796
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	3 cut(s)	120, 220, 577
VpaK11BI	GGWCC	3 cut(s)	20, 598, 841
XapI	RAATTY	5 cut(s)	79, 302, 533, 731, 1139
XcmI	CCANNNNNNNNNTGG	2 cut(s)	406, 750
XspI	CTAG	2 cut(s)	228, 1019
Zsp2I	ATGCAT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.