Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Forward (+)

53327954 .. 53333108

Gene Structure 5155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034741

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAATGCTATTCTTCTTCTTCTTCTTCCTCTTCTTTAAGCAGCTTTTCCATACTGCGAAAGCCTTGCCCATTTGTACCACCATTTACCACCTTTTATAGGAAGCAGCAGCAGCAGCGGCGGCGGCCCCTTATCCAACTCTCTGCAATTTCTTACAACAAATTCATTCACTTCGCTTTGGATGAAACCAAACGCCGCACCCATTTGGCCCCTTCTCCCCTCCAGGACAACACATTGGGACAAGTTAACGAAGGGAGTCAAGTAACTGTTTTGAAGGATTTAACACTTGTTTTGGATTTTGCTGTCTTCCCAGAACCAGAATTTGATATGCCAATATTTTGTGCCAACTTCTTCACCAGTGCAGATGTCAACATAGTTGTGCTGGACCTCAACCCTTTGCACAACGTTATTATTGAAAGGGAATACAGAGATAAATACTACAAAGGCCTAATACCTCTTGGTGTCAAATATGCTGAGCTTTTACCATGGGGTGGGAAGCTTACTAGCGAGTCATTGAAATTTTTTTCACCCATTGTTATATGGACAAGATTTACGTCAAGTCCACAAAAATATGAGGTTTTATATTCGGCTTTCATGGATTATTACAAGGCATGGCTCGAGCTGATGGACCAAGCAGTAGTGGAGACAAATGCCTCTCAAATTAAACGTAACCGTGAAGCACAACATCGATATCTAACTTGGAGAGCAGAAAAGGATCCTGGACATGGAGTTCTGAAAAGGTTGATTGGGGAGACACAAGCAAAGGATTTGCTGGTGAACTTCCTGTTCAATGGAATTGATAAACTAGGAAGCAAAAGTTTCCTGGAGTACTTTCCCGAGTACTGCTGTGAGGATGGGACTATAAATCAGAAACGTAGTATAATTGGAAAGTCTTATGAAAGTCGCCCGTGGGATAGAAAAGGAGAGTTTGTTAGTAGTAATTTTGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

318

Amino Acids

36.67

Weight (kDa)

8.44

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	96 - 264	7.6e-48	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	491
AciI	CCGC	4 cut(s)	118, 121, 124, 196
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	2 cut(s)	710, 723
AcsI	RAATTY	3 cut(s)	161, 320, 518
AfaI	GTAC	3 cut(s)	78, 830, 842
AfiI	CCNNNNNNNGG	3 cut(s)	99, 491, 725
AgsI	TTSAA	5 cut(s)	274, 416, 517, 790, 947
AjnI	CCWGG	3 cut(s)	222, 718, 822
AloI	GAACNNNNNNTCC	2 cut(s)	714, 746
AluBI	AGCT	4 cut(s)	45, 478, 499, 622
AluI	AGCT	4 cut(s)	45, 478, 499, 622
Alw26I	GTCTC	2 cut(s)	638, 746
AlwI	GGATC	2 cut(s)	710, 723
Ama87I	CYCGRG	2 cut(s)	617, 836
AoxI	GGCC	3 cut(s)	125, 207, 445
ApeKI	GCWGC	5 cut(s)	42, 106, 109, 112, 115
ApoI	RAATTY	3 cut(s)	161, 320, 518
AspS9I	GGNCC	4 cut(s)	126, 208, 385, 628
AsuHPI	GGTGA	3 cut(s)	346, 519, 787
AvaI	CYCGRG	2 cut(s)	617, 836
AvaII	GGWCC	2 cut(s)	385, 628
BamHI	GGATCC	1 cut(s)	715
BbsI	GAAGAC	1 cut(s)	298
BbvI	GCAGC	5 cut(s)	54, 118, 121, 124, 127
BccI	CCATC	2 cut(s)	619, 848
BcgI	CGANNNNNNTGC	2 cut(s)	48, 82
BciT130I	CCWGG	3 cut(s)	224, 720, 824
BcoDI	GTCTC	2 cut(s)	638, 746
BfaI	CTAG	2 cut(s)	504, 806
BisI	GCNGC	9 cut(s)	43, 107, 110, 113, 116, 119, 122, 125, 196
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	9 cut(s)	44, 108, 111, 114, 117, 120, 123, 126, 197
BmcAI	AGTACT	2 cut(s)	830, 842
Bme1390I	CCNGG	3 cut(s)	224, 720, 824
Bme18I	GGWCC	2 cut(s)	385, 628
BmeT110I	CYCGRG	2 cut(s)	617, 836
BmgT120I	GGNCC	4 cut(s)	126, 208, 385, 628
BmiI	GGNNCC	3 cut(s)	128, 210, 717
BmrFI	CCNGG	3 cut(s)	224, 720, 824
BpiI	GAAGAC	1 cut(s)	298
BpmI	CTGGAG	2 cut(s)	206, 845
Bpu1102I	GCTNAGC	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	688
BsaJI	CCNNGG	2 cut(s)	485, 908
BsaXI	ACNNNNNCTCC	2 cut(s)	915, 945
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 491, 725
Bse1I	ACTGG	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	224, 720, 824
BseCI	ATCGAT	1 cut(s)	688
BseDI	CCNNGG	2 cut(s)	485, 908
BseGI	GGATG	2 cut(s)	187, 859
BseLI	CCNNNNNNNGG	3 cut(s)	99, 491, 725
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	357
BseXI	GCAGC	5 cut(s)	54, 118, 121, 124, 127
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	3 cut(s)	127, 209, 447
BshVI	ATCGAT	1 cut(s)	688
BsiHKCI	CYCGRG	2 cut(s)	617, 836
BslFI	GGGAC	2 cut(s)	252, 871
BslI	CCNNNNNNNGG	3 cut(s)	99, 491, 725
BsmAI	GTCTC	2 cut(s)	638, 746
BsmFI	GGGAC	2 cut(s)	252, 871
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	127, 209, 447
BsoBI	CYCGRG	2 cut(s)	617, 836
Bsp143I	GATC	1 cut(s)	715
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	485
BspACI	CCGC	4 cut(s)	118, 121, 124, 196
BspANI	GGCC	3 cut(s)	127, 209, 447
BspCNI	CTCAG	1 cut(s)	466
BspDI	ATCGAT	1 cut(s)	688
BspLI	GGNNCC	3 cut(s)	128, 210, 717
BspPI	GGATC	2 cut(s)	710, 723
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	2 cut(s)	485, 908
BssMI	GATC	1 cut(s)	715
BssT1I	CCWWGG	1 cut(s)	485
Bst2UI	CCWGG	3 cut(s)	224, 720, 824
Bst4CI	ACNGT	2 cut(s)	268, 674
Bst6I	CTCTTC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	474
BstDSI	CCRYGG	2 cut(s)	485, 908
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	187, 859
BstKTI	GATC	1 cut(s)	718
BstMAI	GTCTC	2 cut(s)	638, 746
BstMBI	GATC	1 cut(s)	715
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 115, 118, 121, 124
BstNI	CCWGG	3 cut(s)	224, 720, 824
BstSCI	CCNGG	3 cut(s)	222, 718, 822
BstV1I	GCAGC	5 cut(s)	54, 118, 121, 124, 127
BstV2I	GAAGAC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
Bsu15I	ATCGAT	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	127, 209, 447
BsuTUI	ATCGAT	1 cut(s)	688
BtgI	CCRYGG	2 cut(s)	485, 908
BtsCI	GGATG	2 cut(s)	187, 859
BtsIMutI	CAGTG	1 cut(s)	364
Cfr13I	GGNCC	4 cut(s)	126, 208, 385, 628
ClaI	ATCGAT	1 cut(s)	688
Csp6I	GTAC	3 cut(s)	77, 829, 841
CviAII	CATG	4 cut(s)	486, 595, 612, 725
CviQI	GTAC	3 cut(s)	77, 829, 841
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	1 cut(s)	717
DpnII	GATC	1 cut(s)	715
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	485
Eco147I	AGGCCT	1 cut(s)	447
Eco32I	GATATC	1 cut(s)	692
Eco47I	GGWCC	2 cut(s)	385, 628
Eco88I	CYCGRG	2 cut(s)	617, 836
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoRII	CCWGG	3 cut(s)	222, 718, 822
EcoRV	GATATC	1 cut(s)	692
EcoT14I	CCWWGG	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	4 cut(s)	489, 598, 615, 728
FaqI	GGGAC	2 cut(s)	252, 871
FatI	CATG	4 cut(s)	485, 594, 611, 724
Fnu4HI	GCNGC	9 cut(s)	43, 107, 110, 113, 116, 119, 122, 125, 196
FokI	GGATG	2 cut(s)	194, 866
Fsp4HI	GCNGC	9 cut(s)	43, 107, 110, 113, 116, 119, 122, 125, 196
FspBI	CTAG	2 cut(s)	504, 806
GluI	GCNGC	9 cut(s)	43, 107, 110, 113, 116, 119, 122, 125, 196
GsuI	CTGGAG	2 cut(s)	206, 845
HaeIII	GGCC	3 cut(s)	127, 209, 447
Hin1II	CATG	4 cut(s)	489, 598, 615, 728
HincII	GTYRAC	2 cut(s)	247, 370
HindII	GTYRAC	2 cut(s)	247, 370
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	2 cut(s)	256, 509
HpaI	GTTAAC	1 cut(s)	247
HphI	GGTGA	3 cut(s)	346, 519, 787
Hpy166II	GTNNAC	4 cut(s)	247, 370, 563, 778
Hpy188I	TCNGA	2 cut(s)	735, 870
Hpy188III	TCNNGA	1 cut(s)	836
Hpy8I	GTNNAC	4 cut(s)	247, 370, 563, 778
HpyAV	CCTTC	3 cut(s)	222, 245, 268
HpyCH4III	ACNGT	2 cut(s)	268, 674
HpyCH4IV	ACGT	4 cut(s)	405, 554, 667, 874
HpyCH4V	TGCA	3 cut(s)	146, 362, 400
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 115, 118, 121, 124
HpyF3I	CTNAG	1 cut(s)	474
HpySE526I	ACGT	4 cut(s)	405, 554, 667, 874
Hsp92II	CATG	4 cut(s)	489, 598, 615, 728
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	715
Lsp1109I	GCAGC	5 cut(s)	54, 118, 121, 124, 127
MaeI	CTAG	2 cut(s)	504, 806
MaeII	ACGT	4 cut(s)	405, 554, 667, 874
MaeIII	GTNAC	2 cut(s)	262, 668
MalI	GATC	1 cut(s)	717
MboI	GATC	1 cut(s)	715
MboII	GAAGA	8 cut(s)	6, 9, 12, 15, 18, 24, 298, 343
MflI	RGATCY	1 cut(s)	715
MluCI	AATT	8 cut(s)	147, 161, 320, 518, 660, 795, 882, 940
MlyI	GAGTC	2 cut(s)	265, 518
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	7 cut(s)	40, 230, 398, 465, 568, 664, 844
MseI	TTAA	4 cut(s)	38, 246, 281, 663
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	118
MspR9I	CCNGG	3 cut(s)	224, 720, 824
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	3 cut(s)	224, 720, 824
MwoI	GCNNNNNNNGC	5 cut(s)	112, 115, 118, 121, 124
NcoI	CCATGG	1 cut(s)	485
NdeII	GATC	1 cut(s)	715
NlaIII	CATG	4 cut(s)	489, 598, 615, 728
NlaIV	GGNNCC	3 cut(s)	128, 210, 717
PaeR7I	CTCGAG	1 cut(s)	617
PceI	AGGCCT	1 cut(s)	447
PctI	GAATGC	1 cut(s)	11
PflMI	CCANNNNNTGG	1 cut(s)	491
PfoI	TCCNGGA	3 cut(s)	222, 718, 822
PkrI	GCNGC	9 cut(s)	44, 108, 111, 114, 117, 120, 123, 126, 197
PleI	GAGTC	2 cut(s)	264, 517
PpsI	GAGTC	2 cut(s)	264, 517
Psp1406I	AACGTT	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	222, 718, 822
PspGI	CCWGG	3 cut(s)	222, 718, 822
PspN4I	GGNNCC	3 cut(s)	128, 210, 717
PspPI	GGNCC	4 cut(s)	126, 208, 385, 628
PspXI	VCTCGAGB	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	3 cut(s)	78, 830, 842
RsaNI	GTAC	3 cut(s)	77, 829, 841
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	4 cut(s)	38, 246, 281, 663
SatI	GCNGC	9 cut(s)	43, 107, 110, 113, 116, 119, 122, 125, 196
Sau3AI	GATC	1 cut(s)	715
Sau96I	GGNCC	4 cut(s)	126, 208, 385, 628
ScaI	AGTACT	2 cut(s)	830, 842
SchI	GAGTC	2 cut(s)	265, 518
ScrFI	CCNGG	3 cut(s)	224, 720, 824
Sfr274I	CTCGAG	1 cut(s)	617
SinI	GGWCC	2 cut(s)	385, 628
SlaI	CTCGAG	1 cut(s)	617
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	8 cut(s)	147, 161, 320, 518, 660, 795, 882, 940
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	4 cut(s)	118, 121, 124, 196
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	2 cut(s)	504, 806
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	3 cut(s)	222, 718, 822
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	2 cut(s)	268, 674
TaiI	ACGT	4 cut(s)	408, 557, 670, 877
TaqI	TCGA	2 cut(s)	618, 688
TasI	AATT	8 cut(s)	147, 161, 320, 518, 660, 795, 882, 940
TatI	WGTACW	2 cut(s)	828, 840
TauI	GCSGC	4 cut(s)	121, 124, 127, 198
Tru1I	TTAA	4 cut(s)	38, 246, 281, 663
Tru9I	TTAA	4 cut(s)	38, 246, 281, 663
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	5 cut(s)	42, 106, 109, 112, 115
TspDTI	ATGAA	4 cut(s)	154, 198, 583, 912
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	385, 628
XagI	CCTNNNNNAGG	1 cut(s)	97
XapI	RAATTY	3 cut(s)	161, 320, 518
XhoI	CTCGAG	1 cut(s)	617
XspI	CTAG	2 cut(s)	504, 806
ZrmI	AGTACT	2 cut(s)	830, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.