Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005084

Physical Location & Seq

Genomic Coordinates Forward (+)

52635893 .. 52640603

Gene Structure 4711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G031720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGAATGCTCTTCTTCTTCCTCTTCCTCTTCTTTAAGCAGCTTTTCCATACTGCGAAAGCCTTGCCCATTTGTACCACCATTTACCACCGTTTATAGGAAGCAGCAGCAGCAGCAGCGGCGACCCCTTATCCAACTCTCCGCAGTTTCTTACAACAAATTCATTCACTTCGCTTTGGATGAATCCAAACGCCGCACCCATTTGGCCCCTTCTCCCCTCCAGGAAAGATATAATTCCATGGTTTCCATGGATGGTAATGCAGAACTTCAAATGTCATCATTCAAAGCTACTAAGATTAGGCTTTTACGTAGCCTATGTATTGAGACTCAAACAATGCAGGTTTTGGATTTTGCTGTCTTCCCAGAACCAGAATTTGATATGCCAATATTTTGTGCCAACTTCTTCACCAGTGCGGATGTCAACATAGTTGTGCTGGACCTCAACCCTTTGCACAACGTTATTATTGAAAGAGAATACAGAGATAAATACTACAAAGGCCTAATACCTCTTGGTGTCAAATATGCTGAGCTTTTACCATGGGGTGGGAAGCTTACTAGCGAGTCATTGAAATTTTTTTCACCCATTGTTATATGGACAAGATTTACGTCAAGTCCAGAAAAATATGAGGTTTTATATTCGGCTTTCATGGATTATTACAAGGCATGGCTCGAGCTGATGGACCAAGCAGTAGTGGAGACAAATGCCTCTCAAATTAAACGTAACCGTGAAGCGCAACATCGATATCTAACTTGGAGAGCAGAAAAGGATCCTGGACATGGAGTTCTGAAAAGGTTGATTGGGGAGACACAAGCAAAGGATTTGCTGGTGAACTTCCTGTTCAATGGAATTGATAAACTAGGAAGCAAAAGTTTCCTGGAGTACTTTCCCGAGTACTGCTGTGAGGATGGGACTATAAATCAGAAACGTAGTATAATTGGAAAGTCTTATGAAAGTCGCCCGTGGGATAGAAAAGGAGAGTTTGTTAGTAGCAATTTTGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010019 GO:0016491 GO:0016627 GO:0016636 GO:0023052 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050619 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00860 ko01110 map00860 map01110

Pfam Domains

Protein Families

Fe_bilin_red

Protein Analysis

334

Amino Acids

38.67

Weight (kDa)

8.58

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe_bilin_red	PF05996	62 - 281	9.8e-58	Ferredoxin-dependent bilin reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09150 AT3G09150 AT3G09150 AT3G09150
fragaria_vesca	FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130 FvH4_3g28130
malus_domestica	MD03G1169100.v1.1
prunus_persica	Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1 Prupe.4G258500_v2.0.a1
pyrus_communis	pycom03g12530
rosa_chinensis	RchiOBHm_Chr5g0050821
rosa_laevigata	RLG00000034741
rosa_multiflora	Rmu_sc0004083.1_g000001 Rmu_sc0007394.1_g000007 Rmu_sc0037809.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029890
rosa_rugosa	Rorug05G0264300.1 Rorug05G0264400.1
rosa_samantha	Rh5AG336300 Rh5BG345900 Rh5CG373600 Rh5DG358900
rosa_wichuraiana	Rw5G031720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	542
AciI	CCGC	4 cut(s)	118, 141, 193, 413
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	2 cut(s)	761, 774
AcsI	RAATTY	3 cut(s)	158, 371, 569
AfaI	GTAC	3 cut(s)	75, 881, 893
AfiI	CCNNNNNNNGG	3 cut(s)	96, 542, 776
AgsI	TTSAA	6 cut(s)	269, 283, 467, 568, 841, 998
AjnI	CCWGG	3 cut(s)	219, 769, 873
AloI	GAACNNNNNNTCC	2 cut(s)	765, 797
AluBI	AGCT	5 cut(s)	42, 287, 529, 550, 673
AluI	AGCT	5 cut(s)	42, 287, 529, 550, 673
Alw26I	GTCTC	3 cut(s)	317, 689, 797
AlwI	GGATC	2 cut(s)	761, 774
Ama87I	CYCGRG	2 cut(s)	668, 887
AoxI	GGCC	2 cut(s)	204, 496
ApeKI	GCWGC	6 cut(s)	39, 103, 106, 109, 112, 115
ApoI	RAATTY	3 cut(s)	158, 371, 569
AspLEI	GCGC	1 cut(s)	733
AspS9I	GGNCC	3 cut(s)	205, 436, 679
AsuHPI	GGTGA	3 cut(s)	397, 570, 838
AvaI	CYCGRG	2 cut(s)	668, 887
AvaII	GGWCC	2 cut(s)	436, 679
BamHI	GGATCC	1 cut(s)	766
BbsI	GAAGAC	1 cut(s)	349
BbvI	GCAGC	6 cut(s)	51, 115, 118, 121, 124, 127
BccI	CCATC	3 cut(s)	245, 670, 899
BcgI	CGANNNNNNTGC	2 cut(s)	45, 79
BciT130I	CCWGG	3 cut(s)	221, 771, 875
BcoDI	GTCTC	3 cut(s)	317, 689, 797
BfaI	CTAG	2 cut(s)	555, 857
BfuAI	ACCTGC	1 cut(s)	328
BisI	GCNGC	8 cut(s)	40, 104, 107, 110, 113, 116, 119, 193
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	8 cut(s)	41, 105, 108, 111, 114, 117, 120, 194
BmcAI	AGTACT	2 cut(s)	881, 893
Bme1390I	CCNGG	3 cut(s)	221, 771, 875
Bme18I	GGWCC	2 cut(s)	436, 679
BmeT110I	CYCGRG	2 cut(s)	668, 887
BmgT120I	GGNCC	3 cut(s)	205, 436, 679
BmiI	GGNNCC	2 cut(s)	207, 768
BmrFI	CCNGG	3 cut(s)	221, 771, 875
BpiI	GAAGAC	1 cut(s)	349
BpmI	CTGGAG	2 cut(s)	203, 896
Bpu1102I	GCTNAGC	1 cut(s)	525
Bsa29I	ATCGAT	1 cut(s)	739
BsaAI	YACGTR	1 cut(s)	308
BsaJI	CCNNGG	4 cut(s)	237, 246, 536, 959
BsaXI	ACNNNNNCTCC	2 cut(s)	966, 996
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 542, 776
Bse1I	ACTGG	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	221, 771, 875
BseCI	ATCGAT	1 cut(s)	739
BseDI	CCNNGG	4 cut(s)	237, 246, 536, 959
BseGI	GGATG	4 cut(s)	184, 256, 421, 910
BseLI	CCNNNNNNNGG	3 cut(s)	96, 542, 776
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	1 cut(s)	408
BseXI	GCAGC	6 cut(s)	51, 115, 118, 121, 124, 127
BshFI	GGCC	2 cut(s)	206, 498
BshVI	ATCGAT	1 cut(s)	739
BsiHKCI	CYCGRG	2 cut(s)	668, 887
BslFI	GGGAC	1 cut(s)	922
BslI	CCNNNNNNNGG	3 cut(s)	96, 542, 776
BsmAI	GTCTC	3 cut(s)	317, 689, 797
BsmFI	GGGAC	1 cut(s)	922
BsmI	GAATGC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	206, 498
BsoBI	CYCGRG	2 cut(s)	668, 887
Bsp143I	GATC	1 cut(s)	766
Bsp1720I	GCTNAGC	1 cut(s)	525
Bsp19I	CCATGG	3 cut(s)	237, 246, 536
BspACI	CCGC	4 cut(s)	118, 141, 193, 413
BspANI	GGCC	2 cut(s)	206, 498
BspCNI	CTCAG	1 cut(s)	517
BspDI	ATCGAT	1 cut(s)	739
BspLI	GGNNCC	2 cut(s)	207, 768
BspMI	ACCTGC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	761, 774
BspQI	GCTCTTC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	4 cut(s)	237, 246, 536, 959
BssMI	GATC	1 cut(s)	766
BssT1I	CCWWGG	3 cut(s)	237, 246, 536
Bst2UI	CCWGG	3 cut(s)	221, 771, 875
Bst4CI	ACNGT	2 cut(s)	91, 725
Bst6I	CTCTTC	3 cut(s)	16, 28, 34
BstBAI	YACGTR	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	291, 525
BstDSI	CCRYGG	4 cut(s)	237, 246, 536, 959
BstF5I	GGATG	4 cut(s)	184, 256, 421, 910
BstHHI	GCGC	1 cut(s)	733
BstKTI	GATC	1 cut(s)	769
BstMAI	GTCTC	3 cut(s)	317, 689, 797
BstMBI	GATC	1 cut(s)	766
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 112, 115, 118
BstNI	CCWGG	3 cut(s)	221, 771, 875
BstSCI	CCNGG	3 cut(s)	219, 769, 873
BstSNI	TACGTA	1 cut(s)	308
BstV1I	GCAGC	6 cut(s)	51, 115, 118, 121, 124, 127
BstV2I	GAAGAC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
Bsu15I	ATCGAT	1 cut(s)	739
BsuRI	GGCC	2 cut(s)	206, 498
BsuTUI	ATCGAT	1 cut(s)	739
BtgI	CCRYGG	4 cut(s)	237, 246, 536, 959
BtsCI	GGATG	4 cut(s)	184, 256, 421, 910
BtsIMutI	CAGTG	1 cut(s)	415
BveI	ACCTGC	1 cut(s)	328
CfoI	GCGC	1 cut(s)	733
Cfr13I	GGNCC	3 cut(s)	205, 436, 679
ClaI	ATCGAT	1 cut(s)	739
Csp6I	GTAC	3 cut(s)	74, 880, 892
CviAII	CATG	6 cut(s)	238, 247, 537, 646, 663, 776
CviQI	GTAC	3 cut(s)	74, 880, 892
DdeI	CTNAG	2 cut(s)	291, 525
DpnI	GATC	1 cut(s)	768
DpnII	GATC	1 cut(s)	766
Eam1104I	CTCTTC	3 cut(s)	16, 28, 34
EarI	CTCTTC	3 cut(s)	16, 28, 34
Eco105I	TACGTA	1 cut(s)	308
Eco130I	CCWWGG	3 cut(s)	237, 246, 536
Eco147I	AGGCCT	1 cut(s)	498
Eco32I	GATATC	1 cut(s)	743
Eco47I	GGWCC	2 cut(s)	436, 679
Eco88I	CYCGRG	2 cut(s)	668, 887
EcoRII	CCWGG	3 cut(s)	219, 769, 873
EcoRV	GATATC	1 cut(s)	743
EcoT14I	CCWWGG	3 cut(s)	237, 246, 536
ErhI	CCWWGG	3 cut(s)	237, 246, 536
FaeI	CATG	6 cut(s)	241, 250, 540, 649, 666, 779
FaqI	GGGAC	1 cut(s)	922
FatI	CATG	6 cut(s)	237, 246, 536, 645, 662, 775
Fnu4HI	GCNGC	8 cut(s)	40, 104, 107, 110, 113, 116, 119, 193
FokI	GGATG	4 cut(s)	191, 263, 428, 917
Fsp4HI	GCNGC	8 cut(s)	40, 104, 107, 110, 113, 116, 119, 193
FspBI	CTAG	2 cut(s)	555, 857
GlaI	GCGC	1 cut(s)	732
GluI	GCNGC	8 cut(s)	40, 104, 107, 110, 113, 116, 119, 193
GsuI	CTGGAG	2 cut(s)	203, 896
HaeIII	GGCC	2 cut(s)	206, 498
HhaI	GCGC	1 cut(s)	733
Hin1II	CATG	6 cut(s)	241, 250, 540, 649, 666, 779
Hin6I	GCGC	1 cut(s)	731
HinP1I	GCGC	1 cut(s)	731
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	3 cut(s)	182, 325, 560
HphI	GGTGA	3 cut(s)	397, 570, 838
Hpy166II	GTNNAC	2 cut(s)	421, 829
Hpy188I	TCNGA	2 cut(s)	786, 921
Hpy188III	TCNNGA	2 cut(s)	614, 887
Hpy8I	GTNNAC	2 cut(s)	421, 829
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	2 cut(s)	91, 725
HpyCH4IV	ACGT	5 cut(s)	307, 456, 605, 718, 925
HpyCH4V	TGCA	3 cut(s)	260, 337, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 112, 115, 118
HpyF3I	CTNAG	2 cut(s)	291, 525
HpySE526I	ACGT	5 cut(s)	307, 456, 605, 718, 925
Hsp92II	CATG	6 cut(s)	241, 250, 540, 649, 666, 779
HspAI	GCGC	1 cut(s)	731
Kzo9I	GATC	1 cut(s)	766
LguI	GCTCTTC	1 cut(s)	16
Lsp1109I	GCAGC	6 cut(s)	51, 115, 118, 121, 124, 127
MaeI	CTAG	2 cut(s)	555, 857
MaeII	ACGT	5 cut(s)	307, 456, 605, 718, 925
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	1 cut(s)	768
MboI	GATC	1 cut(s)	766
MboII	GAAGA	7 cut(s)	3, 6, 9, 15, 21, 349, 394
MflI	RGATCY	1 cut(s)	766
MluCI	AATT	8 cut(s)	158, 232, 371, 569, 711, 846, 933, 991
MlyI	GAGTC	2 cut(s)	319, 569
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	8 cut(s)	31, 37, 227, 449, 516, 619, 715, 895
MseI	TTAA	2 cut(s)	35, 714
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	118
MspR9I	CCNGG	3 cut(s)	221, 771, 875
Mva1269I	GAATGC	1 cut(s)	11
MvaI	CCWGG	3 cut(s)	221, 771, 875
MwoI	GCNNNNNNNGC	4 cut(s)	109, 112, 115, 118
NcoI	CCATGG	3 cut(s)	237, 246, 536
NdeII	GATC	1 cut(s)	766
NlaIII	CATG	6 cut(s)	241, 250, 540, 649, 666, 779
NlaIV	GGNNCC	2 cut(s)	207, 768
PaeR7I	CTCGAG	1 cut(s)	668
PceI	AGGCCT	1 cut(s)	498
PciSI	GCTCTTC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	542
PfoI	TCCNGGA	3 cut(s)	219, 769, 873
PkrI	GCNGC	8 cut(s)	41, 105, 108, 111, 114, 117, 120, 194
PleI	GAGTC	2 cut(s)	319, 568
PpsI	GAGTC	2 cut(s)	319, 568
Ppu21I	YACGTR	1 cut(s)	308
Psp1406I	AACGTT	1 cut(s)	456
Psp6I	CCWGG	3 cut(s)	219, 769, 873
PspGI	CCWGG	3 cut(s)	219, 769, 873
PspN4I	GGNNCC	2 cut(s)	207, 768
PspPI	GGNCC	3 cut(s)	205, 436, 679
PspXI	VCTCGAGB	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	766
RsaI	GTAC	3 cut(s)	75, 881, 893
RsaNI	GTAC	3 cut(s)	74, 880, 892
RseI	CAYNNNNRTG	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	35, 714
SatI	GCNGC	8 cut(s)	40, 104, 107, 110, 113, 116, 119, 193
Sau3AI	GATC	1 cut(s)	766
Sau96I	GGNCC	3 cut(s)	205, 436, 679
ScaI	AGTACT	2 cut(s)	881, 893
SchI	GAGTC	2 cut(s)	319, 569
ScrFI	CCNGG	3 cut(s)	221, 771, 875
Sfr274I	CTCGAG	1 cut(s)	668
SinI	GGWCC	2 cut(s)	436, 679
SlaI	CTCGAG	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SnaBI	TACGTA	1 cut(s)	308
Sse9I	AATT	8 cut(s)	158, 232, 371, 569, 711, 846, 933, 991
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	4 cut(s)	118, 141, 193, 413
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	2 cut(s)	555, 857
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	3 cut(s)	219, 769, 873
StyI	CCWWGG	3 cut(s)	237, 246, 536
TaaI	ACNGT	2 cut(s)	91, 725
TaiI	ACGT	5 cut(s)	310, 459, 608, 721, 928
TaqI	TCGA	2 cut(s)	669, 739
TasI	AATT	8 cut(s)	158, 232, 371, 569, 711, 846, 933, 991
TatI	WGTACW	2 cut(s)	879, 891
TauI	GCSGC	2 cut(s)	121, 195
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	35, 714
Tru9I	TTAA	2 cut(s)	35, 714
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	6 cut(s)	39, 103, 106, 109, 112, 115
TspDTI	ATGAA	4 cut(s)	151, 195, 634, 963
TspRI	CASTG	1 cut(s)	415
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	436, 679
XapI	RAATTY	3 cut(s)	158, 371, 569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XhoI	CTCGAG	1 cut(s)	668
XspI	CTAG	2 cut(s)	555, 857
ZrmI	AGTACT	2 cut(s)	881, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.