FvH4_3g29090
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014700
Physical Location & Seq
Reverse (-)
22195029 .. 22197595
2567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29090.t1

Sequence Viewer

Length: 1356 bp
ATGGACGGTTCAGGTTTAGGAGGTGGATTTTTGTCCGGTCCTAGTGGAGGGACACTAGACCTTGAATCGTCGATTCCTAGACACCAGGAGAAGCAAATGGGTCATCCGGTGTTAGCACATCATCAACGTGTGAATGTGATGAGTGGCGTTGGAGTTGATCGCTGCCCTGTGGGGCTTGTAGAGGTGAAAGGGTCAATACCAAGAGGTGCTTCGATGAATGTTGTAAAAGGGAAGGGGGTTGCACCTTTTTATACTAGTAATGCTTACAATTTGAGTGAAGAGGATGAGCCTAGTTATAATGAAGATGGGAATGATGAGAGCCTTGAAGGAGTCAAGGGTAAAAAGGGGTCAACATGGCAGCGAATGAAATGGACAGATAGAGTGGTTAGGCTTCTTATATCAGTGGTTGCTTGTGTGGGTGATGATGGTGTTGAAGGTGGTGAAGGCCTTAAGAGGAAGTCTGCAGTTTTACAGAAAAAGGGTAAGTGGAAGACTGTGTCAAAGATAATGATCGGTAAAGGATGCCATGTATCACCTCAGCAGTGCGAGGACAAGTTTAATGATTTGAACAAGAGGTATAAGAGGTTAAATGATATTCTTGGGAGGGGAACTAGCTGTAGAGTGGTGGAGAATCCTTCTCTCATGGACTCAATGCCCCATCTCTCTGCCAAGGCGAAAGATGATGTTAGAAAGATATTGAGTTCAAAACAGTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGTGGATACCTGGTTGCCATGATCTTGACCTCCAAGGTGATCCTTTACGTCCCGGGAGATGCTCAACAGACAATAATGTTTCTGAGGAAGAAGGAGTTGAAGAACACCATGACACTGAGGATGATGGTTCAGATAACGAAGATAATAATGCTGACGGTAGTGATAGGGACCGGATGGGTAGAACGGGTGACAGGAAGAGGTCTAGTGAAGAGGATGACCATTTCTGGCAACATGTTTCTCTGGATACTTTTGAAGTTGAAATGGCTGAGGTTCTTCAAGACCCAACAAAGTCTTTATGGGAGCGAAGAGAGTGGATCAACAAACAGAAGTTGCGACTCCAACAGCAAAGAGTCAACTGCGAGGCTGAAGATTTGGAGCTTGAGAAGCAGAGATATAGATGGCTAAGATATCGTAGCAAGAAAGACAGGGAACTCGAGAGGTTGAGGCTGGAGAATGAGAGAATGAAATTAGAGAATGAGAAAAGAGTACTGCAACTGAGGCAGAAAGAACTGGAAATAGATGTGAGGAGGTCAGAAGCTTCTTTAGAACCTTCTGTTGGTATTGACAGATTGCTAGGAAGAGATCTTGACTTGGGCAGACATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

452

Amino Acids

51.28

Weight (kDa)

6.08

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 121 - 210 6.7e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 297, 720
AclWI GGATC 2 cut(s) 782, 1070
AcuI CTGAAG 1 cut(s) 1134
AfaI GTAC 1 cut(s) 1236
AfiI CCNNNNNNNGG 2 cut(s) 47, 1304
AflII CTTAAG 1 cut(s) 449
AflIII ACRYGT 2 cut(s) 127, 979
AgsI TTSAA 9 cut(s) 65, 326, 434, 568, 705, 848, 1001, 1007, 1025
AhlI ACTAGT 1 cut(s) 254
AjnI CCWGG 2 cut(s) 84, 757
AjuI GAANNNNNNNTTGG 4 cut(s) 193, 225, 1287, 1319
AluBI AGCT 3 cut(s) 615, 1126, 1286
AluI AGCT 3 cut(s) 615, 1126, 1286
AlwI GGATC 2 cut(s) 782, 1070
Ama87I CYCGRG 2 cut(s) 800, 1181
AoxI GGCC 1 cut(s) 445
ApeKI GCWGC 2 cut(s) 162, 358
AspS9I GGNCC 2 cut(s) 38, 916
AsuC2I CCSGG 2 cut(s) 801, 802
AsuHPI GGTGA 6 cut(s) 196, 431, 452, 525, 797, 947
AvaI CYCGRG 2 cut(s) 800, 1181
AvaII GGWCC 2 cut(s) 38, 916
BbsI GAAGAC 1 cut(s) 497
BbvCI CCTCAGC 2 cut(s) 537, 1014
BbvI GCAGC 2 cut(s) 149, 370
BccI CCATC 6 cut(s) 299, 419, 666, 866, 916, 1140
BciT130I CCWGG 2 cut(s) 86, 759
BciVI GTATCC 2 cut(s) 747, 985
BcnI CCSGG 2 cut(s) 801, 802
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 8 cut(s) 42, 56, 78, 255, 291, 612, 951, 1322
BfmI CTRYAG 2 cut(s) 462, 616
BfrI CTTAAG 1 cut(s) 449
BfuI GTATCC 2 cut(s) 747, 985
BglII AGATCT 1 cut(s) 1330
BisI GCNGC 2 cut(s) 163, 359
BlsI GCNGC 2 cut(s) 164, 360
BmcAI AGTACT 1 cut(s) 1236
Bme1390I CCNGG 4 cut(s) 86, 759, 801, 802
Bme18I GGWCC 2 cut(s) 38, 916
BmeT110I CYCGRG 2 cut(s) 800, 1181
BmgT120I GGNCC 2 cut(s) 38, 916
BmiI GGNNCC 1 cut(s) 917
BmrFI CCNGG 4 cut(s) 86, 759, 801, 802
BmsI GCATC 2 cut(s) 512, 797
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 1217
Bpu10I CCTNAGC 2 cut(s) 537, 1014
BpuEI CTTGAG 1 cut(s) 1148
BpuMI CCSGG 2 cut(s) 801, 802
BsaBI GATNNNNATC 1 cut(s) 509
BsaJI CCNNGG 3 cut(s) 669, 781, 800
BsaWI WCCGGW 3 cut(s) 35, 106, 918
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 1304
Bse1I ACTGG 1 cut(s) 1263
Bse8I GATNNNNATC 1 cut(s) 509
BseBI CCWGG 2 cut(s) 86, 759
BseDI CCNNGG 3 cut(s) 669, 781, 800
BseGI GGATG 6 cut(s) 103, 289, 527, 874, 927, 967
BseJI GATNNNNATC 1 cut(s) 509
BseLI CCNNNNNNNGG 2 cut(s) 47, 1304
BseMII CTCAG 5 cut(s) 551, 822, 855, 1005, 1235
BseNI ACTGG 1 cut(s) 1263
BseRI GAGGAG 1 cut(s) 1288
BseXI GCAGC 2 cut(s) 149, 370
BshFI GGCC 1 cut(s) 447
BsiHKCI CYCGRG 2 cut(s) 800, 1181
BsiSI CCGG 4 cut(s) 36, 107, 801, 919
BslFI GGGAC 3 cut(s) 64, 783, 929
BslI CCNNNNNNNGG 2 cut(s) 47, 1304
BsmFI GGGAC 3 cut(s) 64, 783, 929
BsnI GGCC 1 cut(s) 447
BsoBI CYCGRG 2 cut(s) 800, 1181
Bsp143I GATC 6 cut(s) 157, 510, 769, 787, 1062, 1330
BspANI GGCC 1 cut(s) 447
BspCNI CTCAG 5 cut(s) 550, 823, 856, 1006, 1236
BspLI GGNNCC 1 cut(s) 917
BspMAI CTGCAG 1 cut(s) 466
BspPI GGATC 2 cut(s) 782, 1070
BspTI CTTAAG 1 cut(s) 449
BsrI ACTGG 1 cut(s) 1263
BssECI CCNNGG 3 cut(s) 669, 781, 800
BssMI GATC 6 cut(s) 157, 510, 769, 787, 1062, 1330
BssT1I CCWWGG 2 cut(s) 669, 781
Bst2UI CCWGG 2 cut(s) 86, 759
Bst4CI ACNGT 5 cut(s) 8, 496, 711, 750, 905
Bst6I CTCTTC 5 cut(s) 273, 938, 951, 1048, 1321
BstAFI CTTAAG 1 cut(s) 449
BstDEI CTNAG 6 cut(s) 537, 831, 864, 1014, 1151, 1244
BstENI CCTNNNNNAGG 1 cut(s) 45
BstF5I GGATG 6 cut(s) 103, 289, 527, 874, 927, 967
BstKTI GATC 6 cut(s) 160, 513, 772, 790, 1065, 1333
BstMBI GATC 6 cut(s) 157, 510, 769, 787, 1062, 1330
BstMWI GCNNNNNNNGC 2 cut(s) 1132, 1246
BstNI CCWGG 2 cut(s) 86, 759
BstNSI RCATGY 1 cut(s) 983
BstSCI CCNGG 4 cut(s) 84, 757, 799, 800
BstSFI CTRYAG 2 cut(s) 462, 616
BstV1I GCAGC 2 cut(s) 149, 370
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 1330
BstYI RGATCY 1 cut(s) 1330
BsuI GTATCC 2 cut(s) 747, 985
BsuRI GGCC 1 cut(s) 447
BtsCI GGATG 6 cut(s) 103, 289, 527, 874, 927, 967
BtsI GCAGTG 1 cut(s) 548
BtsIMutI CAGTG 4 cut(s) 408, 548, 755, 861
Cfr13I GGNCC 2 cut(s) 38, 916
Cfr9I CCCGGG 1 cut(s) 800
CsiI ACCWGGT 1 cut(s) 757
Csp6I GTAC 1 cut(s) 1235
CviAII CATG 6 cut(s) 354, 527, 643, 767, 857, 980
CviQI GTAC 1 cut(s) 1235
DdeI CTNAG 6 cut(s) 537, 831, 864, 1014, 1151, 1244
DpnI GATC 6 cut(s) 159, 512, 771, 789, 1064, 1332
DpnII GATC 6 cut(s) 157, 510, 769, 787, 1062, 1330
Eam1104I CTCTTC 5 cut(s) 273, 938, 951, 1048, 1321
EarI CTCTTC 5 cut(s) 273, 938, 951, 1048, 1321
Eco130I CCWWGG 2 cut(s) 669, 781
Eco147I AGGCCT 1 cut(s) 447
Eco32I GATATC 1 cut(s) 1157
Eco47I GGWCC 2 cut(s) 38, 916
Eco57I CTGAAG 1 cut(s) 1134
Eco88I CYCGRG 2 cut(s) 800, 1181
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 84, 757
EcoRV GATATC 1 cut(s) 1157
EcoT14I CCWWGG 2 cut(s) 669, 781
ErhI CCWWGG 2 cut(s) 669, 781
FaeI CATG 6 cut(s) 357, 530, 646, 770, 860, 983
FalI AAGNNNNNCTT 2 cut(s) 193, 225
FaqI GGGAC 3 cut(s) 64, 783, 929
FatI CATG 6 cut(s) 353, 526, 642, 766, 856, 979
Fnu4HI GCNGC 2 cut(s) 163, 359
FokI GGATG 6 cut(s) 90, 296, 534, 881, 934, 974
Fsp4HI GCNGC 2 cut(s) 163, 359
FspBI CTAG 8 cut(s) 42, 56, 78, 255, 291, 612, 951, 1322
GluI GCNGC 2 cut(s) 163, 359
GsuI CTGGAG 1 cut(s) 1217
HaeIII GGCC 1 cut(s) 447
HapII CCGG 4 cut(s) 36, 107, 801, 919
Hin1II CATG 6 cut(s) 357, 530, 646, 770, 860, 983
HincII GTYRAC 2 cut(s) 351, 1102
HindII GTYRAC 2 cut(s) 351, 1102
HindIII AAGCTT 1 cut(s) 1284
HinfI GANTC 7 cut(s) 65, 73, 330, 631, 647, 1083, 1098
HpaII CCGG 4 cut(s) 36, 107, 801, 919
HphI GGTGA 6 cut(s) 196, 431, 452, 525, 797, 947
Hpy166II GTNNAC 2 cut(s) 351, 1102
Hpy188I TCNGA 3 cut(s) 832, 880, 1282
Hpy188III TCNNGA 5 cut(s) 773, 989, 1025, 1183, 1334
Hpy8I GTNNAC 2 cut(s) 351, 1102
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 7 cut(s) 226, 320, 428, 437, 645, 833, 1308
HpyCH4III ACNGT 5 cut(s) 8, 496, 711, 750, 905
HpyCH4IV ACGT 2 cut(s) 127, 796
HpyCH4V TGCA 3 cut(s) 242, 464, 1240
HpyF10VI GCNNNNNNNGC 2 cut(s) 1132, 1246
HpyF3I CTNAG 6 cut(s) 537, 831, 864, 1014, 1151, 1244
HpySE526I ACGT 2 cut(s) 127, 796
Hsp92II CATG 6 cut(s) 357, 530, 646, 770, 860, 983
Kzo9I GATC 6 cut(s) 157, 510, 769, 787, 1062, 1330
LmnI GCTCC 2 cut(s) 1048, 1123
Lsp1109I GCAGC 2 cut(s) 149, 370
LweI GCATC 2 cut(s) 512, 797
MabI ACCWGGT 1 cut(s) 757
MaeI CTAG 8 cut(s) 42, 56, 78, 255, 291, 612, 951, 1322
MaeII ACGT 2 cut(s) 127, 796
MaeIII GTNAC 1 cut(s) 935
MalI GATC 6 cut(s) 159, 512, 771, 789, 1064, 1332
MboI GATC 6 cut(s) 157, 510, 769, 787, 1062, 1330
MflI RGATCY 1 cut(s) 1330
MluCI AATT 2 cut(s) 268, 1214
MlyI GAGTC 4 cut(s) 339, 641, 1077, 1107
MmeI TCCRAC 2 cut(s) 130, 1111
MseI TTAA 3 cut(s) 450, 558, 587
MslI CAYNNNNRTG 1 cut(s) 126
MspCI CTTAAG 1 cut(s) 449
MspI CCGG 4 cut(s) 36, 107, 801, 919
MspR9I CCNGG 4 cut(s) 86, 759, 801, 802
MvaI CCWGG 2 cut(s) 86, 759
MwoI GCNNNNNNNGC 2 cut(s) 1132, 1246
NciI CCSGG 2 cut(s) 801, 802
NdeII GATC 6 cut(s) 157, 510, 769, 787, 1062, 1330
NlaIII CATG 6 cut(s) 357, 530, 646, 770, 860, 983
NlaIV GGNNCC 1 cut(s) 917
NmuCI GTSAC 1 cut(s) 935
NspI RCATGY 1 cut(s) 983
PaeR7I CTCGAG 1 cut(s) 1181
PceI AGGCCT 1 cut(s) 447
PciI ACATGT 1 cut(s) 979
PfeI GAWTC 3 cut(s) 65, 73, 631
PflFI GACNNNGTC 1 cut(s) 496
PkrI GCNGC 2 cut(s) 164, 360
PleI GAGTC 4 cut(s) 338, 641, 1077, 1106
PpsI GAGTC 4 cut(s) 338, 641, 1077, 1106
PscI ACATGT 1 cut(s) 979
PsiI TTATAA 2 cut(s) 297, 720
Psp6I CCWGG 2 cut(s) 84, 757
PspGI CCWGG 2 cut(s) 84, 757
PspN4I GGNNCC 1 cut(s) 917
PspPI GGNCC 2 cut(s) 38, 916
PstI CTGCAG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 1330
PsyI GACNNNGTC 1 cut(s) 496
RsaI GTAC 1 cut(s) 1236
RsaNI GTAC 1 cut(s) 1235
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 3 cut(s) 450, 558, 587
SatI GCNGC 2 cut(s) 163, 359
Sau3AI GATC 6 cut(s) 157, 510, 769, 787, 1062, 1330
Sau96I GGNCC 2 cut(s) 38, 916
ScaI AGTACT 1 cut(s) 1236
SchI GAGTC 4 cut(s) 339, 641, 1077, 1107
ScrFI CCNGG 4 cut(s) 86, 759, 801, 802
SexAI ACCWGGT 1 cut(s) 757
SfaNI GCATC 2 cut(s) 512, 797
SfcI CTRYAG 2 cut(s) 462, 616
Sfr274I CTCGAG 1 cut(s) 1181
SinI GGWCC 2 cut(s) 38, 916
SlaI CTCGAG 1 cut(s) 1181
SmaI CCCGGG 1 cut(s) 802
SmiMI CAYNNNNRTG 1 cut(s) 126
SmlI CTYRAG 3 cut(s) 449, 1127, 1181
SmoI CTYRAG 3 cut(s) 449, 1127, 1181
SpeI ACTAGT 1 cut(s) 254
Sse9I AATT 2 cut(s) 268, 1214
SseBI AGGCCT 1 cut(s) 447
SspMI CTAG 8 cut(s) 42, 56, 78, 255, 291, 612, 951, 1322
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 4 cut(s) 84, 757, 799, 800
StyI CCWWGG 2 cut(s) 669, 781
TaaI ACNGT 5 cut(s) 8, 496, 711, 750, 905
TaiI ACGT 2 cut(s) 130, 799
TaqI TCGA 3 cut(s) 71, 212, 1182
TasI AATT 2 cut(s) 268, 1214
TatI WGTACW 1 cut(s) 1234
TfiI GAWTC 3 cut(s) 65, 73, 631
Tru1I TTAA 3 cut(s) 450, 558, 587
Tru9I TTAA 3 cut(s) 450, 558, 587
TscAI CASTG 4 cut(s) 408, 548, 755, 868
TseFI GTSAC 1 cut(s) 935
TseI GCWGC 2 cut(s) 162, 358
Tsp45I GTSAC 1 cut(s) 935
TspDTI ATGAA 4 cut(s) 230, 315, 380, 1226
TspMI CCCGGG 1 cut(s) 800
TspRI CASTG 4 cut(s) 408, 548, 755, 868
Tth111I GACNNNGTC 1 cut(s) 496
Vha464I CTTAAG 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 38, 916
XagI CCTNNNNNAGG 1 cut(s) 45
XceI RCATGY 1 cut(s) 983
XhoI CTCGAG 1 cut(s) 1181
XmaI CCCGGG 1 cut(s) 800
XspI CTAG 8 cut(s) 42, 56, 78, 255, 291, 612, 951, 1322
ZrmI AGTACT 1 cut(s) 1236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.