Rh5BG362800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014700
Physical Location & Seq
Reverse (-)
56768751 .. 56772540
3790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG362800.1

Sequence Viewer

Length: 1371 bp
ATGGATGGTTCAGGTTTGGGAGGTGGATTTTTGTCTGGTCCAAGTGGGGGGACGCTAGACCTTGAATCGGGGATCCCTAGACACCAGGAGAAGCAGTTGGGTCTTCCGGGGTTGGCACATCATCAACATCATGGGATTGTGATGAGTGGTGTTGGGGTTGGGGTTGATCACCGTCCTGTAGGGCTTGCAGAGGTGAAAGGGTCGATACCAAGAGGTGCTTCGATGAATGTTGTAAAAGGAAAGGCCGTTGCACCTTTTAATACCAATAATGCTTACAATTTGAGTGAAGAAGATGAGCCAAGTTATACAGAAGATGGGAATGGTGAGAACGTTGAAGGAGCCAAGGGTAAAAAGGGATCCACATGGCAGCGAATGAAATGGACGGATAGAGTGGTTAGGCTTCTTATATCGGTGGTTGCTTGTGTGGATGATGATGGTACAGTTGAAGGTGGTGGTGAAGGCCTTAAGAGGAAATCTGCAGTTTTACAGAAAAAGGGTAAATGGAAGACTGTGTCAAAGATAATGATTGGTAAAGGTTGCCATGTATCACCTCAGCAGTGCGAGGACAAGTTTAATGATTTGAACAAGAGGTATAAGAGGTTGAATGATATTCTTGGGAGGGGAACTAGTTGTAGAGTGGTGGAGAATCCTGCTCTTATGGACTCAATGCCCCATCTCTCCGCCAAGGCGAAAGATGACGTTAGAAAGATTTTGAGTTCAAAACAGTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGTGGATACCTGGTTGTCATGATCTTGACCTCAAAGGTCATCCTTTACCTCCCGGGAGATGCTCAACAGACAATAATGTTTCTGAGGAAGAAGGGGCTGAAGAACACCATGACACTGAGGATGATGAGTTAGATGACGAAGATAATAATGCTGATGGTATTGATAGAGATCGGATGGGTAGAATGGGTGACAGGACGAGATCTAGTGAAGAAGATGACCATTTCTGGCAACAGGTTTCTCTGGATAGTTTTGAAGTTGAAATGGCTGAGGTTCTTCAAGACCCAACAAAGTCTCTATGGGAGCGAAGAGAGTGGATCAAGAAACAGAAGTTGCAACTCCAACAGCAAAGAGTCAGCTGCGAGGCTGAAGCTTTGGAGCTTGAGAAGCAGAGGTATAAATGGCTAAGATACCGTAGCAAGAAAGACAGGGAACTGGAAAGGTTGAGGCTGGAGAATGAGAGAATGAGATTAGAGAATGACAAAAGGGTACTGCAACTGAGGCAGAAGGAAGTGGAAATAGATTTGAGGCTGTCAGAAGCTTCTTTAGAACCTTCTGTTGGTATTGACAGATTGCTAGGAAGAGATCTTGACTTGGGGAGGCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

456

Amino Acids

51.4

Weight (kDa)

5.91

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 124 - 215 5.4e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 735
AciI CCGC 1 cut(s) 681
AclI AACGTT 1 cut(s) 330
AclWI GGATC 5 cut(s) 67, 80, 351, 364, 1085
AcuI CTGAAG 2 cut(s) 882, 1149
AfaI GTAC 2 cut(s) 439, 1251
AfiI CCNNNNNNNGG 3 cut(s) 47, 67, 1319
AflII CTTAAG 1 cut(s) 464
AgsI TTSAA 9 cut(s) 65, 335, 446, 583, 604, 720, 1016, 1022, 1040
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 2 cut(s) 84, 772
AjuI GAANNNNNNNTTGG 4 cut(s) 202, 234, 1302, 1334
AluBI AGCT 4 cut(s) 1119, 1133, 1141, 1301
AluI AGCT 4 cut(s) 1119, 1133, 1141, 1301
Alw26I GTCTC 1 cut(s) 1059
AlwI GGATC 5 cut(s) 67, 80, 351, 364, 1085
Ama87I CYCGRG 1 cut(s) 815
AoxI GGCC 2 cut(s) 243, 460
ApeKI GCWGC 2 cut(s) 367, 1119
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 3 cut(s) 108, 816, 817
AsuHPI GGTGA 6 cut(s) 161, 205, 335, 467, 540, 962
AvaI CYCGRG 1 cut(s) 815
AvaII GGWCC 1 cut(s) 38
BamHI GGATCC 2 cut(s) 72, 356
BbsI GAAGAC 2 cut(s) 95, 512
BbvCI CCTCAGC 2 cut(s) 552, 1029
BbvI GCAGC 2 cut(s) 379, 1106
BccI CCATC 5 cut(s) 308, 428, 681, 911, 931
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 2 cut(s) 86, 774
BciVI GTATCC 1 cut(s) 762
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 3 cut(s) 108, 816, 817
BcoDI GTCTC 1 cut(s) 1059
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 5 cut(s) 56, 78, 627, 966, 1337
BfmI CTRYAG 2 cut(s) 177, 477
BfrI CTTAAG 1 cut(s) 464
BfuI GTATCC 1 cut(s) 762
BglII AGATCT 2 cut(s) 962, 1345
BisI GCNGC 2 cut(s) 368, 1120
BlsI GCNGC 2 cut(s) 369, 1121
Bme1390I CCNGG 5 cut(s) 86, 108, 774, 816, 817
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 815
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 3 cut(s) 74, 340, 358
BmrFI CCNGG 5 cut(s) 86, 108, 774, 816, 817
BmsI GCATC 1 cut(s) 812
BpiI GAAGAC 2 cut(s) 95, 512
BpmI CTGGAG 1 cut(s) 1232
Bpu10I CCTNAGC 2 cut(s) 552, 1029
BpuEI CTTGAG 1 cut(s) 1163
BpuMI CCSGG 3 cut(s) 108, 816, 817
BsaBI GATNNNNATC 1 cut(s) 930
BsaJI CCNNGG 4 cut(s) 107, 342, 684, 815
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 67, 1319
Bse1I ACTGG 1 cut(s) 1200
Bse8I GATNNNNATC 1 cut(s) 930
BseBI CCWGG 2 cut(s) 86, 774
BseDI CCNNGG 4 cut(s) 107, 342, 684, 815
BseGI GGATG 5 cut(s) 10, 433, 802, 889, 942
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 3 cut(s) 47, 67, 1319
BseMII CTCAG 5 cut(s) 566, 837, 870, 1020, 1250
BseNI ACTGG 1 cut(s) 1200
BseXI GCAGC 2 cut(s) 379, 1106
BshFI GGCC 2 cut(s) 245, 462
BsiHKCI CYCGRG 1 cut(s) 815
BsiSI CCGG 2 cut(s) 107, 816
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 47, 67, 1319
BsmAI GTCTC 1 cut(s) 1059
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 2 cut(s) 245, 462
BsoBI CYCGRG 1 cut(s) 815
Bsp143I GATC 8 cut(s) 72, 166, 356, 784, 931, 962, 1077, 1345
BspACI CCGC 1 cut(s) 681
BspANI GGCC 2 cut(s) 245, 462
BspCNI CTCAG 5 cut(s) 565, 838, 871, 1021, 1251
BspHI TCATGA 1 cut(s) 781
BspLI GGNNCC 3 cut(s) 74, 340, 358
BspMAI CTGCAG 1 cut(s) 481
BspPI GGATC 5 cut(s) 67, 80, 351, 364, 1085
BspTI CTTAAG 1 cut(s) 464
BsrI ACTGG 1 cut(s) 1200
BssECI CCNNGG 4 cut(s) 107, 342, 684, 815
BssMI GATC 8 cut(s) 72, 166, 356, 784, 931, 962, 1077, 1345
BssT1I CCWWGG 2 cut(s) 342, 684
Bst2UI CCWGG 2 cut(s) 86, 774
Bst4CI ACNGT 6 cut(s) 173, 442, 511, 726, 765, 1175
Bst6I CTCTTC 2 cut(s) 1063, 1336
BstAFI CTTAAG 1 cut(s) 464
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 6 cut(s) 552, 846, 879, 1029, 1166, 1259
BstF5I GGATG 5 cut(s) 10, 433, 802, 889, 942
BstKTI GATC 8 cut(s) 75, 169, 359, 787, 934, 965, 1080, 1348
BstMAI GTCTC 1 cut(s) 1059
BstMBI GATC 8 cut(s) 72, 166, 356, 784, 931, 962, 1077, 1345
BstMWI GCNNNNNNNGC 2 cut(s) 1147, 1261
BstNI CCWGG 2 cut(s) 86, 774
BstSCI CCNGG 5 cut(s) 84, 106, 772, 814, 815
BstSFI CTRYAG 2 cut(s) 177, 477
BstV1I GCAGC 2 cut(s) 379, 1106
BstV2I GAAGAC 2 cut(s) 95, 512
BstX2I RGATCY 4 cut(s) 72, 356, 962, 1345
BstYI RGATCY 4 cut(s) 72, 356, 962, 1345
BsuI GTATCC 1 cut(s) 762
BsuRI GGCC 2 cut(s) 245, 462
BtsCI GGATG 5 cut(s) 10, 433, 802, 889, 942
BtsI GCAGTG 1 cut(s) 563
BtsIMutI CAGTG 3 cut(s) 563, 770, 876
Cac8I GCNNGC 1 cut(s) 186
CciI TCATGA 1 cut(s) 781
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 815
CseI GACGC 1 cut(s) 61
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 2 cut(s) 438, 1250
CviAII CATG 5 cut(s) 131, 363, 542, 782, 872
CviQI GTAC 2 cut(s) 438, 1250
DdeI CTNAG 6 cut(s) 552, 846, 879, 1029, 1166, 1259
DpnI GATC 8 cut(s) 74, 168, 358, 786, 933, 964, 1079, 1347
DpnII GATC 8 cut(s) 72, 166, 356, 784, 931, 962, 1077, 1345
Eam1104I CTCTTC 2 cut(s) 1063, 1336
EarI CTCTTC 2 cut(s) 1063, 1336
EciI GGCGGA 1 cut(s) 670
Eco130I CCWWGG 2 cut(s) 342, 684
Eco147I AGGCCT 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 882, 1149
Eco88I CYCGRG 1 cut(s) 815
EcoRII CCWGG 2 cut(s) 84, 772
EcoT14I CCWWGG 2 cut(s) 342, 684
ErhI CCWWGG 2 cut(s) 342, 684
FaeI CATG 5 cut(s) 134, 366, 545, 785, 875
FalI AAGNNNNNCTT 2 cut(s) 202, 234
FaqI GGGAC 1 cut(s) 64
FatI CATG 5 cut(s) 130, 362, 541, 781, 871
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 368, 1120
FokI GGATG 5 cut(s) 17, 440, 789, 896, 949
Fsp4HI GCNGC 2 cut(s) 368, 1120
FspBI CTAG 5 cut(s) 56, 78, 627, 966, 1337
GluI GCNGC 2 cut(s) 368, 1120
GsuI CTGGAG 1 cut(s) 1232
HaeIII GGCC 2 cut(s) 245, 462
HapII CCGG 2 cut(s) 107, 816
HgaI GACGC 1 cut(s) 61
Hin1II CATG 5 cut(s) 134, 366, 545, 785, 875
HindIII AAGCTT 2 cut(s) 1131, 1299
HinfI GANTC 4 cut(s) 65, 646, 662, 1113
HpaII CCGG 2 cut(s) 107, 816
HphI GGTGA 6 cut(s) 161, 205, 335, 467, 540, 962
Hpy188I TCNGA 3 cut(s) 847, 936, 1297
Hpy188III TCNNGA 6 cut(s) 782, 788, 1004, 1040, 1081, 1349
HpyAV CCTTC 6 cut(s) 329, 440, 452, 848, 1261, 1323
HpyCH4III ACNGT 6 cut(s) 173, 442, 511, 726, 765, 1175
HpyCH4IV ACGT 2 cut(s) 330, 699
HpyCH4V TGCA 5 cut(s) 188, 251, 479, 1096, 1255
HpyF10VI GCNNNNNNNGC 2 cut(s) 1147, 1261
HpyF3I CTNAG 6 cut(s) 552, 846, 879, 1029, 1166, 1259
HpySE526I ACGT 2 cut(s) 330, 699
Hsp92II CATG 5 cut(s) 134, 366, 545, 785, 875
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 8 cut(s) 72, 166, 356, 784, 931, 962, 1077, 1345
LmnI GCTCC 3 cut(s) 338, 1063, 1138
Lsp1109I GCAGC 2 cut(s) 379, 1106
LweI GCATC 1 cut(s) 812
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 5 cut(s) 56, 78, 627, 966, 1337
MaeII ACGT 2 cut(s) 330, 699
MaeIII GTNAC 1 cut(s) 950
MalI GATC 8 cut(s) 74, 168, 358, 786, 933, 964, 1079, 1347
MboI GATC 8 cut(s) 72, 166, 356, 784, 931, 962, 1077, 1345
MflI RGATCY 4 cut(s) 72, 356, 962, 1345
MluCI AATT 1 cut(s) 277
MlyI GAGTC 2 cut(s) 656, 1122
MmeI TCCRAC 1 cut(s) 1126
MseI TTAA 3 cut(s) 258, 465, 573
MspA1I CMGCKG 1 cut(s) 1119
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 2 cut(s) 107, 816
MspR9I CCNGG 5 cut(s) 86, 108, 774, 816, 817
MvaI CCWGG 2 cut(s) 86, 774
MwoI GCNNNNNNNGC 2 cut(s) 1147, 1261
NciI CCSGG 3 cut(s) 108, 816, 817
NdeII GATC 8 cut(s) 72, 166, 356, 784, 931, 962, 1077, 1345
NlaIII CATG 5 cut(s) 134, 366, 545, 785, 875
NlaIV GGNNCC 3 cut(s) 74, 340, 358
NmuCI GTSAC 1 cut(s) 950
PagI TCATGA 1 cut(s) 781
PceI AGGCCT 1 cut(s) 462
PfeI GAWTC 2 cut(s) 65, 646
PflFI GACNNNGTC 1 cut(s) 511
PkrI GCNGC 2 cut(s) 369, 1121
PleI GAGTC 2 cut(s) 656, 1121
PpsI GAGTC 2 cut(s) 656, 1121
PsiI TTATAA 1 cut(s) 735
Psp1406I AACGTT 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 84, 772
PspGI CCWGG 2 cut(s) 84, 772
PspN4I GGNNCC 3 cut(s) 74, 340, 358
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 4 cut(s) 72, 356, 962, 1345
PsyI GACNNNGTC 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 1119
RsaI GTAC 2 cut(s) 439, 1251
RsaNI GTAC 2 cut(s) 438, 1250
SaqAI TTAA 3 cut(s) 258, 465, 573
SatI GCNGC 2 cut(s) 368, 1120
Sau3AI GATC 8 cut(s) 72, 166, 356, 784, 931, 962, 1077, 1345
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 656, 1122
ScrFI CCNGG 5 cut(s) 86, 108, 774, 816, 817
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 1 cut(s) 812
SfcI CTRYAG 2 cut(s) 177, 477
SinI GGWCC 1 cut(s) 38
SmaI CCCGGG 1 cut(s) 817
SmlI CTYRAG 2 cut(s) 464, 1142
SmoI CTYRAG 2 cut(s) 464, 1142
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 1 cut(s) 277
SseBI AGGCCT 1 cut(s) 462
SsiI CCGC 1 cut(s) 681
SspMI CTAG 5 cut(s) 56, 78, 627, 966, 1337
StuI AGGCCT 1 cut(s) 462
StyD4I CCNGG 5 cut(s) 84, 106, 772, 814, 815
StyI CCWWGG 2 cut(s) 342, 684
TaaI ACNGT 6 cut(s) 173, 442, 511, 726, 765, 1175
TaiI ACGT 2 cut(s) 333, 702
TaqI TCGA 2 cut(s) 203, 221
TasI AATT 1 cut(s) 277
TfiI GAWTC 2 cut(s) 65, 646
Tru1I TTAA 3 cut(s) 258, 465, 573
Tru9I TTAA 3 cut(s) 258, 465, 573
TscAI CASTG 3 cut(s) 563, 770, 883
TseFI GTSAC 1 cut(s) 950
TseI GCWGC 2 cut(s) 367, 1119
Tsp45I GTSAC 1 cut(s) 950
TspDTI ATGAA 2 cut(s) 239, 389
TspGWI ACGGA 1 cut(s) 398
TspMI CCCGGG 1 cut(s) 815
TspRI CASTG 3 cut(s) 563, 770, 883
Tth111I GACNNNGTC 1 cut(s) 511
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 38
XmaI CCCGGG 1 cut(s) 815
XspI CTAG 5 cut(s) 56, 78, 627, 966, 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.