Rh5AG350700
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0014700
Physical Location & Seq
Reverse (-)
58088809 .. 58091121
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG350700.1

Sequence Viewer

Length: 1362 bp
ATGGATGGTTCAGGTTTGGGAGGTGGATTTCTGTCTGGTCCAAGTGGGGGGACGCTAGACCTTGAATCGGCGATCCCTAGACACCAGGAGAAGCAGTTGGGTCTTCCGGGGTTGGCACATCATCAACATCATGGGATTGTGATGAGTGGTGTTGGGGTTGATCACCGTCCTGTAGGGCTTGCAGAGGTGAAAGGGTCGATACCAAGAGGTGCTTCGATGAATGTTGTAAAAGGGAAGGCCGTTGCACCTTTTAGTACCAATAATGCTTACAATTTGAGTGAAGAAGATGAGCCAAGTTATACAGAAGATGGGAATGGTGAGAACGTTGAAGGAGCCAAGGGTAAAAAGGGATCCACATGGCAGCGAATGAAATGGACGGATAGAGTGGTTAGGCTTCTTATATCGGTGGTTGCTTGTGTGGATGATGATGGTACAGTTGAAGGTGGTGGTGAAGGCCTTAAGAGGAAATCTGCAGTTTTACAGAAAAAGGGTAAGTGGAAGACTGTGTCAAAGATAATGATTGGTAAAGGTTGCCATGTGTCACCTCAGCAGTGCGAGGACAAGTTTAATGATTTGAACAAGAGGTATAAGAGGTTGAATGATATTCTTGGGAGGGGAACTAGTTGTAGAGTGGTGGAGAATCCTACTCTTATGGACTCAATGCCCCATCTCTCCGCCAAGGCGAAAGATGACGTTAGAAAGATTTTGAGTTCAAAACAGTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGTGGATACCTGGTTGTCATGATCTTGACCTCAAAGGTCATCCTTTACCTCCCGGGAGATGCTCAACAGACAATAATGTTTCTGAGGAAGAAGGGGCTGAAGAACACCATGACACTGATGATGAGTTAGATGACGAAGATAATAATGCTGATGGTATTGATAGGGATCGGATGGGTAGAATGGGTGACAGGACGAGATCTAGTGAAGAAGATGACCATTTCTGGCAACAGGTTTCTCTGGATAGTTTTGAAGTTGAAATGGCTGAGGTTCTTCAAGACCCAACAAAGTCTCTATGGGAGCGAAGAGAGTGGATCAAGAAACAGAAGTTGCAACTCCAACAGCAAAGAGTCAGCTGCGAGGCTGAAGCTTTGGAGCTTGAGAAGCAGAGGTATAAATGGCTAAGATACCGTAGCAAGAAAGACAGGGAACTGGAGAGGTTGAGGCTGGAGAATGAGAGAATGAGATTAGAGAATGACAAAAGGGTACTGCAACTGAGGCAGAAGGAACTGGAAATAGATGTGAGGCTGTCAGAAGCCTCTTTAGAACCTTCTGTTGGTATTGACAGATTGCTAGGAAGAGATCTTGACTTGGGGAGGCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

453

Amino Acids

51.14

Weight (kDa)

5.98

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 122 - 213 5.6e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
AciI CCGC 1 cut(s) 675
AclI AACGTT 1 cut(s) 324
AclWI GGATC 5 cut(s) 67, 345, 358, 930, 1076
AcuI CTGAAG 2 cut(s) 876, 1140
AfaI GTAC 3 cut(s) 256, 433, 1242
AfiI CCNNNNNNNGG 3 cut(s) 47, 67, 1310
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 9 cut(s) 65, 329, 440, 577, 598, 714, 1007, 1013, 1031
AhlI ACTAGT 1 cut(s) 620
AjnI CCWGG 2 cut(s) 84, 766
AjuI GAANNNNNNNTTGG 4 cut(s) 196, 228, 1293, 1325
AluBI AGCT 3 cut(s) 1110, 1124, 1132
AluI AGCT 3 cut(s) 1110, 1124, 1132
Alw26I GTCTC 1 cut(s) 1050
AlwI GGATC 5 cut(s) 67, 345, 358, 930, 1076
Ama87I CYCGRG 1 cut(s) 809
AoxI GGCC 2 cut(s) 237, 454
ApeKI GCWGC 2 cut(s) 361, 1110
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 3 cut(s) 108, 810, 811
AsuHPI GGTGA 6 cut(s) 155, 199, 329, 461, 534, 953
AvaI CYCGRG 1 cut(s) 809
AvaII GGWCC 1 cut(s) 38
BamHI GGATCC 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 95, 506
BbvCI CCTCAGC 2 cut(s) 546, 1020
BbvI GCAGC 2 cut(s) 373, 1097
BccI CCATC 5 cut(s) 302, 422, 675, 902, 922
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 86, 768
BciVI GTATCC 1 cut(s) 756
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 3 cut(s) 108, 810, 811
BcoDI GTCTC 1 cut(s) 1050
BcuI ACTAGT 1 cut(s) 620
BfaI CTAG 5 cut(s) 56, 78, 621, 957, 1328
BfmI CTRYAG 2 cut(s) 171, 471
BfrI CTTAAG 1 cut(s) 458
BfuI GTATCC 1 cut(s) 756
BglII AGATCT 2 cut(s) 953, 1336
BisI GCNGC 2 cut(s) 362, 1111
BlsI GCNGC 2 cut(s) 363, 1112
Bme1390I CCNGG 5 cut(s) 86, 108, 768, 810, 811
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 809
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 334, 352
BmrFI CCNGG 5 cut(s) 86, 108, 768, 810, 811
BmsI GCATC 1 cut(s) 806
BpiI GAAGAC 2 cut(s) 95, 506
BpmI CTGGAG 2 cut(s) 1208, 1223
Bpu10I CCTNAGC 2 cut(s) 546, 1020
BpuEI CTTGAG 1 cut(s) 1154
BpuMI CCSGG 3 cut(s) 108, 810, 811
BsaBI GATNNNNATC 1 cut(s) 921
BsaJI CCNNGG 4 cut(s) 107, 336, 678, 809
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 67, 1310
Bse1I ACTGG 2 cut(s) 1191, 1269
Bse8I GATNNNNATC 1 cut(s) 921
BseBI CCWGG 2 cut(s) 86, 768
BseDI CCNNGG 4 cut(s) 107, 336, 678, 809
BseGI GGATG 4 cut(s) 10, 427, 796, 933
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 3 cut(s) 47, 67, 1310
BseMII CTCAG 4 cut(s) 560, 831, 1011, 1241
BseNI ACTGG 2 cut(s) 1191, 1269
BseXI GCAGC 2 cut(s) 373, 1097
BshFI GGCC 2 cut(s) 239, 456
BsiHKCI CYCGRG 1 cut(s) 809
BsiSI CCGG 2 cut(s) 107, 810
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 47, 67, 1310
BsmAI GTCTC 1 cut(s) 1050
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 2 cut(s) 239, 456
BsoBI CYCGRG 1 cut(s) 809
Bsp143I GATC 8 cut(s) 72, 160, 350, 778, 922, 953, 1068, 1336
BspACI CCGC 1 cut(s) 675
BspANI GGCC 2 cut(s) 239, 456
BspCNI CTCAG 4 cut(s) 559, 832, 1012, 1242
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 2 cut(s) 334, 352
BspMAI CTGCAG 1 cut(s) 475
BspPI GGATC 5 cut(s) 67, 345, 358, 930, 1076
BspTI CTTAAG 1 cut(s) 458
BsrI ACTGG 2 cut(s) 1191, 1269
BssECI CCNNGG 4 cut(s) 107, 336, 678, 809
BssMI GATC 8 cut(s) 72, 160, 350, 778, 922, 953, 1068, 1336
BssT1I CCWWGG 2 cut(s) 336, 678
Bst2UI CCWGG 2 cut(s) 86, 768
Bst4CI ACNGT 6 cut(s) 167, 436, 505, 720, 759, 1166
Bst6I CTCTTC 2 cut(s) 1054, 1327
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 5 cut(s) 546, 840, 1020, 1157, 1250
BstF5I GGATG 4 cut(s) 10, 427, 796, 933
BstKTI GATC 8 cut(s) 75, 163, 353, 781, 925, 956, 1071, 1339
BstMAI GTCTC 1 cut(s) 1050
BstMBI GATC 8 cut(s) 72, 160, 350, 778, 922, 953, 1068, 1336
BstMWI GCNNNNNNNGC 2 cut(s) 1138, 1252
BstNI CCWGG 2 cut(s) 86, 768
BstSCI CCNGG 5 cut(s) 84, 106, 766, 808, 809
BstSFI CTRYAG 2 cut(s) 171, 471
BstV1I GCAGC 2 cut(s) 373, 1097
BstV2I GAAGAC 2 cut(s) 95, 506
BstX2I RGATCY 3 cut(s) 350, 953, 1336
BstYI RGATCY 3 cut(s) 350, 953, 1336
BsuI GTATCC 1 cut(s) 756
BsuRI GGCC 2 cut(s) 239, 456
BtsCI GGATG 4 cut(s) 10, 427, 796, 933
BtsI GCAGTG 1 cut(s) 557
BtsIMutI CAGTG 3 cut(s) 557, 764, 870
Cac8I GCNNGC 1 cut(s) 180
CciI TCATGA 1 cut(s) 775
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 809
CseI GACGC 1 cut(s) 61
CsiI ACCWGGT 1 cut(s) 766
Csp6I GTAC 3 cut(s) 255, 432, 1241
CviAII CATG 5 cut(s) 131, 357, 536, 776, 866
CviQI GTAC 3 cut(s) 255, 432, 1241
DdeI CTNAG 5 cut(s) 546, 840, 1020, 1157, 1250
DpnI GATC 8 cut(s) 74, 162, 352, 780, 924, 955, 1070, 1338
DpnII GATC 8 cut(s) 72, 160, 350, 778, 922, 953, 1068, 1336
Eam1104I CTCTTC 2 cut(s) 1054, 1327
EarI CTCTTC 2 cut(s) 1054, 1327
EciI GGCGGA 1 cut(s) 664
Eco130I CCWWGG 2 cut(s) 336, 678
Eco147I AGGCCT 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 876, 1140
Eco88I CYCGRG 1 cut(s) 809
EcoRII CCWGG 2 cut(s) 84, 766
EcoT14I CCWWGG 2 cut(s) 336, 678
ErhI CCWWGG 2 cut(s) 336, 678
FaeI CATG 5 cut(s) 134, 360, 539, 779, 869
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FaqI GGGAC 1 cut(s) 64
FatI CATG 5 cut(s) 130, 356, 535, 775, 865
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 362, 1111
FokI GGATG 4 cut(s) 17, 434, 783, 940
Fsp4HI GCNGC 2 cut(s) 362, 1111
FspBI CTAG 5 cut(s) 56, 78, 621, 957, 1328
GluI GCNGC 2 cut(s) 362, 1111
GsuI CTGGAG 2 cut(s) 1208, 1223
HaeIII GGCC 2 cut(s) 239, 456
HapII CCGG 2 cut(s) 107, 810
HgaI GACGC 1 cut(s) 61
Hin1II CATG 5 cut(s) 134, 360, 539, 779, 869
HindIII AAGCTT 1 cut(s) 1122
HinfI GANTC 4 cut(s) 65, 640, 656, 1104
HpaII CCGG 2 cut(s) 107, 810
HphI GGTGA 6 cut(s) 155, 199, 329, 461, 534, 953
Hpy188I TCNGA 3 cut(s) 841, 927, 1288
Hpy188III TCNNGA 6 cut(s) 776, 782, 995, 1031, 1072, 1340
HpyAV CCTTC 7 cut(s) 229, 323, 434, 446, 842, 1252, 1314
HpyCH4III ACNGT 6 cut(s) 167, 436, 505, 720, 759, 1166
HpyCH4IV ACGT 2 cut(s) 324, 693
HpyCH4V TGCA 5 cut(s) 182, 245, 473, 1087, 1246
HpyF10VI GCNNNNNNNGC 2 cut(s) 1138, 1252
HpyF3I CTNAG 5 cut(s) 546, 840, 1020, 1157, 1250
HpySE526I ACGT 2 cut(s) 324, 693
Hsp92II CATG 5 cut(s) 134, 360, 539, 779, 869
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 8 cut(s) 72, 160, 350, 778, 922, 953, 1068, 1336
LmnI GCTCC 3 cut(s) 332, 1054, 1129
Lsp1109I GCAGC 2 cut(s) 373, 1097
LweI GCATC 1 cut(s) 806
MabI ACCWGGT 1 cut(s) 766
MaeI CTAG 5 cut(s) 56, 78, 621, 957, 1328
MaeII ACGT 2 cut(s) 324, 693
MaeIII GTNAC 2 cut(s) 540, 941
MalI GATC 8 cut(s) 74, 162, 352, 780, 924, 955, 1070, 1338
MboI GATC 8 cut(s) 72, 160, 350, 778, 922, 953, 1068, 1336
MflI RGATCY 3 cut(s) 350, 953, 1336
MluCI AATT 1 cut(s) 271
MlyI GAGTC 2 cut(s) 650, 1113
MmeI TCCRAC 1 cut(s) 1117
MseI TTAA 2 cut(s) 459, 567
MspA1I CMGCKG 1 cut(s) 1110
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 2 cut(s) 107, 810
MspR9I CCNGG 5 cut(s) 86, 108, 768, 810, 811
MvaI CCWGG 2 cut(s) 86, 768
MwoI GCNNNNNNNGC 2 cut(s) 1138, 1252
NciI CCSGG 3 cut(s) 108, 810, 811
NdeII GATC 8 cut(s) 72, 160, 350, 778, 922, 953, 1068, 1336
NlaIII CATG 5 cut(s) 134, 360, 539, 779, 869
NlaIV GGNNCC 2 cut(s) 334, 352
NmuCI GTSAC 2 cut(s) 540, 941
PagI TCATGA 1 cut(s) 775
PceI AGGCCT 1 cut(s) 456
PfeI GAWTC 2 cut(s) 65, 640
PflFI GACNNNGTC 1 cut(s) 505
PkrI GCNGC 2 cut(s) 363, 1112
PleI GAGTC 2 cut(s) 650, 1112
PpsI GAGTC 2 cut(s) 650, 1112
PsiI TTATAA 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 84, 766
PspGI CCWGG 2 cut(s) 84, 766
PspN4I GGNNCC 2 cut(s) 334, 352
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 475
PsuI RGATCY 3 cut(s) 350, 953, 1336
PsyI GACNNNGTC 1 cut(s) 505
PvuII CAGCTG 1 cut(s) 1110
RsaI GTAC 3 cut(s) 256, 433, 1242
RsaNI GTAC 3 cut(s) 255, 432, 1241
SaqAI TTAA 2 cut(s) 459, 567
SatI GCNGC 2 cut(s) 362, 1111
Sau3AI GATC 8 cut(s) 72, 160, 350, 778, 922, 953, 1068, 1336
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 650, 1113
ScrFI CCNGG 5 cut(s) 86, 108, 768, 810, 811
SexAI ACCWGGT 1 cut(s) 766
SfaNI GCATC 1 cut(s) 806
SfcI CTRYAG 2 cut(s) 171, 471
SinI GGWCC 1 cut(s) 38
SmaI CCCGGG 1 cut(s) 811
SmlI CTYRAG 2 cut(s) 458, 1133
SmoI CTYRAG 2 cut(s) 458, 1133
SpeI ACTAGT 1 cut(s) 620
Sse9I AATT 1 cut(s) 271
SseBI AGGCCT 1 cut(s) 456
SsiI CCGC 1 cut(s) 675
SspMI CTAG 5 cut(s) 56, 78, 621, 957, 1328
StuI AGGCCT 1 cut(s) 456
StyD4I CCNGG 5 cut(s) 84, 106, 766, 808, 809
StyI CCWWGG 2 cut(s) 336, 678
TaaI ACNGT 6 cut(s) 167, 436, 505, 720, 759, 1166
TaiI ACGT 2 cut(s) 327, 696
TaqI TCGA 2 cut(s) 197, 215
TasI AATT 1 cut(s) 271
TfiI GAWTC 2 cut(s) 65, 640
Tru1I TTAA 2 cut(s) 459, 567
Tru9I TTAA 2 cut(s) 459, 567
TscAI CASTG 3 cut(s) 557, 764, 877
TseFI GTSAC 2 cut(s) 540, 941
TseI GCWGC 2 cut(s) 361, 1110
Tsp45I GTSAC 2 cut(s) 540, 941
TspDTI ATGAA 2 cut(s) 233, 383
TspGWI ACGGA 1 cut(s) 392
TspMI CCCGGG 1 cut(s) 809
TspRI CASTG 3 cut(s) 557, 764, 877
Tth111I GACNNNGTC 1 cut(s) 505
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 38
XmaI CCCGGG 1 cut(s) 809
XspI CTAG 5 cut(s) 56, 78, 621, 957, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.