Rh5CG387500
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014700
Physical Location & Seq
Reverse (-)
51016872 .. 51018754
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG387500.1

Sequence Viewer

Length: 1362 bp
ATGGATGGTTCAGGTTTGGGAGGTGGATTTTTGTCTGGTCCAAGTGGGGGGACACTAGACCTTGAATCGGCGATCCCCAGACACCAGGAGAAGCAGTTGGGTCATCCGGGGTTAGCACATCATCAACATCATGGGATTGTGATGGGTGGTGTTGGGGTTGATCACCGCCCTGTAGGGCTTGTAGAGGTGAAAGGGTCGATACCAAGAGGTGCTTCGATGAATGTTGTAAAAGGGAAGGCGGTTGCACCTTTTAATAGCAATAATGCTTACAATTTGAGTGAAGAAGATGAGCCAAGTTATACAGAAGATGGGAATGGTGAGAACGTCGAAGGAGCCACGGGTAAAAAGGGATCCACATGGCAGCGAATGAAATGGACGGATAGAGTGGTTAGGCTTCTTATATCGGTGGTTGCTTGTGTGGATGATGATGGTACGGTTGAAGGTGGTGAAGGCCTTAAGAGGAAATCTGCAGTTTTACAGAAAAAGGGTAAGTGGAAGACTGTGTCAAAGATAATGATTGGTAAAGGTTGCCATGTGTCACCTCAGCAGTGCGAGGACAAGTTTAATGATTTGAACAAGAGGTATAAAAGGTTGAATGATATTCTTGGGAGGGGAACTAGTTGTAGAGTGGTGGAGAATCCTACTCTTATGGACTCAATGCCCCATCTCTCCGCCAAGGCGAAAGATGACGTTAGAAAGATTTTGAGTTCAAAACAGTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGTGGATACCTGGTTGTCATGATCTTGACCTCAAGGGTCATCCTTTACCTCCCGGGAGATGCTCAACAGACAATAATGTTTCTGAGGAAGAAGGGGCTGAAGAACACCATGACACTGAGGATGATGAGTTAGATGACGAAGATAATAATGCTGATGGTATTGATAGGGATCGGATGGGTAGAATGGGTGACAGGACGAGATCTAGTGAAGAGGATGACCATTTCTGGCAACATGTTTCTCTGGATAGTTTTGAAGTTGAAATGGCTGAGGTTCTTCAAGACCCAACAAAGTCTCTATGGGAGCGAAGAGAGTGGATCAAGAAACAGAAGTTGCAACTCCAACAGCAAAGAGTCAGCTGCGAGGCTGAAGCTTTGGAGATTGAGAAGCAGAGGTATAAATGGCTAAGATACCGTAGCAAGAAAGACAGGGAACTGGAGAGGTTGAGGCTGGAGAATGAGAGAATGAAATTAGAGAATGAGAAAAGGGTACTGCAACTGAGGCAGAAGGAACTGGAAATAGATGTGAGGAGGTCAGAAGCTTCTTTAGAACCTTCTGTTGGTATTGACAGATTGCTAGGAAGAGATCTTGACTTGGGGAGGCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

453

Amino Acids

51.25

Weight (kDa)

5.98

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 122 - 212 4e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 726
AciI CCGC 3 cut(s) 166, 239, 672
AclWI GGATC 5 cut(s) 67, 345, 358, 930, 1076
AcuI CTGAAG 2 cut(s) 873, 1140
AfaI GTAC 2 cut(s) 433, 1242
AfiI CCNNNNNNNGG 3 cut(s) 47, 67, 1310
AflII CTTAAG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 985
AgsI TTSAA 8 cut(s) 65, 440, 574, 595, 711, 1007, 1013, 1031
AhlI ACTAGT 1 cut(s) 617
AjnI CCWGG 2 cut(s) 84, 763
AjuI GAANNNNNNNTTGG 4 cut(s) 196, 228, 1293, 1325
AluBI AGCT 3 cut(s) 1110, 1124, 1292
AluI AGCT 3 cut(s) 1110, 1124, 1292
Alw26I GTCTC 1 cut(s) 1050
AlwI GGATC 5 cut(s) 67, 345, 358, 930, 1076
Ama87I CYCGRG 1 cut(s) 806
AoxI GGCC 1 cut(s) 451
ApeKI GCWGC 2 cut(s) 361, 1110
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 3 cut(s) 108, 807, 808
AsuHPI GGTGA 6 cut(s) 155, 199, 329, 458, 531, 953
AvaI CYCGRG 1 cut(s) 806
AvaII GGWCC 1 cut(s) 38
BamHI GGATCC 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 503
BbvCI CCTCAGC 2 cut(s) 543, 1020
BbvI GCAGC 2 cut(s) 373, 1097
BccI CCATC 6 cut(s) 136, 302, 422, 672, 902, 922
BciT130I CCWGG 2 cut(s) 86, 765
BciVI GTATCC 1 cut(s) 753
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 3 cut(s) 108, 807, 808
BcoDI GTCTC 1 cut(s) 1050
BcuI ACTAGT 1 cut(s) 617
BfaI CTAG 4 cut(s) 56, 618, 957, 1328
BfmI CTRYAG 2 cut(s) 171, 468
BfrI CTTAAG 1 cut(s) 455
BfuI GTATCC 1 cut(s) 753
BglII AGATCT 2 cut(s) 953, 1336
BisI GCNGC 2 cut(s) 362, 1111
BlsI GCNGC 2 cut(s) 363, 1112
Bme1390I CCNGG 5 cut(s) 86, 108, 765, 807, 808
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 806
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 334, 352
BmrFI CCNGG 5 cut(s) 86, 108, 765, 807, 808
BmsI GCATC 1 cut(s) 803
BpiI GAAGAC 1 cut(s) 503
BpmI CTGGAG 2 cut(s) 1208, 1223
Bpu10I CCTNAGC 2 cut(s) 543, 1020
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 3 cut(s) 108, 807, 808
BsaBI GATNNNNATC 1 cut(s) 921
BsaJI CCNNGG 4 cut(s) 107, 336, 675, 806
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 67, 1310
Bse1I ACTGG 2 cut(s) 1191, 1269
Bse8I GATNNNNATC 1 cut(s) 921
BseBI CCWGG 2 cut(s) 86, 765
BseDI CCNNGG 4 cut(s) 107, 336, 675, 806
BseGI GGATG 7 cut(s) 10, 103, 427, 793, 880, 933, 973
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 3 cut(s) 47, 67, 1310
BseMII CTCAG 5 cut(s) 557, 828, 861, 1011, 1241
BseNI ACTGG 2 cut(s) 1191, 1269
BseRI GAGGAG 1 cut(s) 1294
BseXI GCAGC 2 cut(s) 373, 1097
BshFI GGCC 1 cut(s) 453
BsiHKCI CYCGRG 1 cut(s) 806
BsiSI CCGG 2 cut(s) 107, 807
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 47, 67, 1310
BsmAI GTCTC 1 cut(s) 1050
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 453
BsoBI CYCGRG 1 cut(s) 806
Bsp143I GATC 8 cut(s) 72, 160, 350, 775, 922, 953, 1068, 1336
BspACI CCGC 3 cut(s) 166, 239, 672
BspANI GGCC 1 cut(s) 453
BspCNI CTCAG 5 cut(s) 556, 829, 862, 1012, 1242
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 2 cut(s) 334, 352
BspMAI CTGCAG 1 cut(s) 472
BspPI GGATC 5 cut(s) 67, 345, 358, 930, 1076
BspTI CTTAAG 1 cut(s) 455
BsrI ACTGG 2 cut(s) 1191, 1269
BssECI CCNNGG 4 cut(s) 107, 336, 675, 806
BssMI GATC 8 cut(s) 72, 160, 350, 775, 922, 953, 1068, 1336
BssT1I CCWWGG 1 cut(s) 675
Bst2UI CCWGG 2 cut(s) 86, 765
Bst4CI ACNGT 5 cut(s) 436, 502, 717, 756, 1166
Bst6I CTCTTC 3 cut(s) 957, 1054, 1327
BstAFI CTTAAG 1 cut(s) 455
BstDEI CTNAG 6 cut(s) 543, 837, 870, 1020, 1157, 1250
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 7 cut(s) 10, 103, 427, 793, 880, 933, 973
BstKTI GATC 8 cut(s) 75, 163, 353, 778, 925, 956, 1071, 1339
BstMAI GTCTC 1 cut(s) 1050
BstMBI GATC 8 cut(s) 72, 160, 350, 775, 922, 953, 1068, 1336
BstMWI GCNNNNNNNGC 1 cut(s) 1252
BstNI CCWGG 2 cut(s) 86, 765
BstNSI RCATGY 1 cut(s) 989
BstSCI CCNGG 5 cut(s) 84, 106, 763, 805, 806
BstSFI CTRYAG 2 cut(s) 171, 468
BstV1I GCAGC 2 cut(s) 373, 1097
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 3 cut(s) 350, 953, 1336
BstYI RGATCY 3 cut(s) 350, 953, 1336
BsuI GTATCC 1 cut(s) 753
BsuRI GGCC 1 cut(s) 453
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 7 cut(s) 10, 103, 427, 793, 880, 933, 973
BtsI GCAGTG 1 cut(s) 554
BtsIMutI CAGTG 3 cut(s) 554, 761, 867
CciI TCATGA 1 cut(s) 772
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 806
CsiI ACCWGGT 1 cut(s) 763
Csp6I GTAC 2 cut(s) 432, 1241
CviAII CATG 6 cut(s) 131, 357, 533, 773, 863, 986
CviQI GTAC 2 cut(s) 432, 1241
DdeI CTNAG 6 cut(s) 543, 837, 870, 1020, 1157, 1250
DpnI GATC 8 cut(s) 74, 162, 352, 777, 924, 955, 1070, 1338
DpnII GATC 8 cut(s) 72, 160, 350, 775, 922, 953, 1068, 1336
Eam1104I CTCTTC 3 cut(s) 957, 1054, 1327
EarI CTCTTC 3 cut(s) 957, 1054, 1327
EciI GGCGGA 1 cut(s) 661
Eco130I CCWWGG 1 cut(s) 675
Eco147I AGGCCT 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 873, 1140
Eco88I CYCGRG 1 cut(s) 806
EcoRII CCWGG 2 cut(s) 84, 763
EcoT14I CCWWGG 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 6 cut(s) 134, 360, 536, 776, 866, 989
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FaqI GGGAC 1 cut(s) 64
FatI CATG 6 cut(s) 130, 356, 532, 772, 862, 985
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 362, 1111
FokI GGATG 7 cut(s) 17, 90, 434, 780, 887, 940, 980
Fsp4HI GCNGC 2 cut(s) 362, 1111
FspBI CTAG 4 cut(s) 56, 618, 957, 1328
GluI GCNGC 2 cut(s) 362, 1111
GsuI CTGGAG 2 cut(s) 1208, 1223
HaeIII GGCC 1 cut(s) 453
HapII CCGG 2 cut(s) 107, 807
Hin1II CATG 6 cut(s) 134, 360, 536, 776, 866, 989
HindIII AAGCTT 2 cut(s) 1122, 1290
HinfI GANTC 4 cut(s) 65, 637, 653, 1104
HpaII CCGG 2 cut(s) 107, 807
HphI GGTGA 6 cut(s) 155, 199, 329, 458, 531, 953
Hpy188I TCNGA 3 cut(s) 838, 927, 1288
Hpy188III TCNNGA 6 cut(s) 773, 779, 995, 1031, 1072, 1340
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 7 cut(s) 229, 323, 434, 443, 839, 1252, 1314
HpyCH4III ACNGT 5 cut(s) 436, 502, 717, 756, 1166
HpyCH4IV ACGT 2 cut(s) 324, 690
HpyCH4V TGCA 4 cut(s) 245, 470, 1087, 1246
HpyF10VI GCNNNNNNNGC 1 cut(s) 1252
HpyF3I CTNAG 6 cut(s) 543, 837, 870, 1020, 1157, 1250
HpySE526I ACGT 2 cut(s) 324, 690
Hsp92II CATG 6 cut(s) 134, 360, 536, 776, 866, 989
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 8 cut(s) 72, 160, 350, 775, 922, 953, 1068, 1336
LmnI GCTCC 2 cut(s) 332, 1054
Lsp1109I GCAGC 2 cut(s) 373, 1097
LweI GCATC 1 cut(s) 803
MabI ACCWGGT 1 cut(s) 763
MaeI CTAG 4 cut(s) 56, 618, 957, 1328
MaeII ACGT 2 cut(s) 324, 690
MaeIII GTNAC 2 cut(s) 537, 941
MalI GATC 8 cut(s) 74, 162, 352, 777, 924, 955, 1070, 1338
MboI GATC 8 cut(s) 72, 160, 350, 775, 922, 953, 1068, 1336
MflI RGATCY 3 cut(s) 350, 953, 1336
MluCI AATT 2 cut(s) 271, 1220
MlyI GAGTC 2 cut(s) 647, 1113
MmeI TCCRAC 1 cut(s) 1117
MseI TTAA 3 cut(s) 252, 456, 564
MspA1I CMGCKG 1 cut(s) 1110
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 2 cut(s) 107, 807
MspR9I CCNGG 5 cut(s) 86, 108, 765, 807, 808
MvaI CCWGG 2 cut(s) 86, 765
MwoI GCNNNNNNNGC 1 cut(s) 1252
NciI CCSGG 3 cut(s) 108, 807, 808
NdeII GATC 8 cut(s) 72, 160, 350, 775, 922, 953, 1068, 1336
NlaIII CATG 6 cut(s) 134, 360, 536, 776, 866, 989
NlaIV GGNNCC 2 cut(s) 334, 352
NmuCI GTSAC 2 cut(s) 537, 941
NspI RCATGY 1 cut(s) 989
PagI TCATGA 1 cut(s) 772
PceI AGGCCT 1 cut(s) 453
PciI ACATGT 1 cut(s) 985
PfeI GAWTC 2 cut(s) 65, 637
PflFI GACNNNGTC 1 cut(s) 502
PkrI GCNGC 2 cut(s) 363, 1112
PleI GAGTC 2 cut(s) 647, 1112
PpsI GAGTC 2 cut(s) 647, 1112
PscI ACATGT 1 cut(s) 985
PsiI TTATAA 1 cut(s) 726
Psp6I CCWGG 2 cut(s) 84, 763
PspGI CCWGG 2 cut(s) 84, 763
PspN4I GGNNCC 2 cut(s) 334, 352
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 472
PsuI RGATCY 3 cut(s) 350, 953, 1336
PsyI GACNNNGTC 1 cut(s) 502
PvuII CAGCTG 1 cut(s) 1110
RsaI GTAC 2 cut(s) 433, 1242
RsaNI GTAC 2 cut(s) 432, 1241
SaqAI TTAA 3 cut(s) 252, 456, 564
SatI GCNGC 2 cut(s) 362, 1111
Sau3AI GATC 8 cut(s) 72, 160, 350, 775, 922, 953, 1068, 1336
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 647, 1113
ScrFI CCNGG 5 cut(s) 86, 108, 765, 807, 808
SexAI ACCWGGT 1 cut(s) 763
SfaNI GCATC 1 cut(s) 803
SfcI CTRYAG 2 cut(s) 171, 468
SinI GGWCC 1 cut(s) 38
SmaI CCCGGG 1 cut(s) 808
SmlI CTYRAG 2 cut(s) 455, 785
SmoI CTYRAG 2 cut(s) 455, 785
SpeI ACTAGT 1 cut(s) 617
Sse9I AATT 2 cut(s) 271, 1220
SseBI AGGCCT 1 cut(s) 453
SsiI CCGC 3 cut(s) 166, 239, 672
SspMI CTAG 4 cut(s) 56, 618, 957, 1328
StuI AGGCCT 1 cut(s) 453
StyD4I CCNGG 5 cut(s) 84, 106, 763, 805, 806
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 5 cut(s) 436, 502, 717, 756, 1166
TaiI ACGT 2 cut(s) 327, 693
TaqI TCGA 3 cut(s) 197, 215, 327
TasI AATT 2 cut(s) 271, 1220
TfiI GAWTC 2 cut(s) 65, 637
Tru1I TTAA 3 cut(s) 252, 456, 564
Tru9I TTAA 3 cut(s) 252, 456, 564
TscAI CASTG 3 cut(s) 554, 761, 874
TseFI GTSAC 2 cut(s) 537, 941
TseI GCWGC 2 cut(s) 361, 1110
Tsp45I GTSAC 2 cut(s) 537, 941
TspDTI ATGAA 3 cut(s) 233, 383, 1232
TspGWI ACGGA 1 cut(s) 392
TspMI CCCGGG 1 cut(s) 806
TspRI CASTG 3 cut(s) 554, 761, 874
Tth111I GACNNNGTC 1 cut(s) 502
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 38
XceI RCATGY 1 cut(s) 989
XmaI CCCGGG 1 cut(s) 806
XspI CTAG 4 cut(s) 56, 618, 957, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.