MD03G1179000.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0014700
Physical Location & Seq
Reverse (-)
24588258 .. 24591865
3608 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1179000.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGGATGGTTCAGAGTTGGGAGGTGGGTTTTTGTCTGGTCCTAGTGGGGGGATACTAGACCTTGAATCGCCGGTTCCTAGACGCCAAGAGATGCAGTTGGGTCATCAATTGTTAGGACATCAACAACATCACATGAATGTGATGGGGGGCGTTGCAGGCGATCGCCATCCCATTGGGCTTGTGGAAGTGAAAGGGTCAATCCCAAAAGTTGGTTCGATTATTGGCAAAGGGAAGGTTGTTGCTTCCTTTAATGCCAATAACGGTTACAACTTAAGTGATGAAGATGAACAAAATTATACAGATGATGAGAGCATTGAGGGTGCCAAGGGCAAAAAGGGATGTCCGTGGCAGCGAATGAAGTGGACAGATAATGTGGTCAGGCTTCTTATAGATGTTGTTGCTTGCGTGGGTGATGATGGTTCGGTTGAAGGCGGTGAGGGGCTTAAGAGGAAATCTGGGATATTACAGAAGAAGGGTAAGTGGAAGACTGTGTCAAAACTAATGATTAGTAAAGGTTGTCATGTCTCTCCTCAGCAGTGTGAAGACAAGTTTAATGACTTGAACAAAAGGTATAAGAGGTTGAACGATATTCTCGGGAGAGGAACTAGTTGTAGAGTGGTAGAGAATCCTGCTCTTATGGATGCAATGCCCCACCTCTCTGCCAAGTTGAAGGATGACGTTAGGAAGATACTGAGCTCAAAACACTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGAGGACACCTGACTGCCAAGATCTCGATCACCATGGTTATTCTCTACCTCTTGGGAGGTGCTCGAAAGACGATAATGGATCCGCAGAAGAAGAAGCTGAAGAAAACCATGATAGTGAGGATGATGAATTAGACAATGAAGATGATAATGATGCCAATAACGATAGGGAGAGAATGAGAAAAATGGGTGAGATGAAGAGGGCTAGGGAAGAAGATGGCCATTTGTGGCCGCAATATGTTCTTCTCGATAGTTTTCAAGTTGAAATGGGTGAGATTTTTCAAGACCCAACGAAGTCTTTATGGGAGCGAAGAGATTGGATCAAGAAACAGAAGCAGCAACTCCAAGAGCAAAGAGTCAGCTTCCAGGCTGAAGCTTTGGAGATTGAGAAGCAGAGGTATAAATGGCTAAGATATTGTAGCAAGAAAGACAGGGAACTGGAGAGGTTGAGACTAGAGAATGAGAGAATGAAATTAGAGAACGAGAGAAGGGTACTGCAACTGAGACAGAAGGAACTGGAAATAGATTTGAGGAGGTCAGAAGCTTCCTTAGAGCCTTCCTCACTTGGGCTAGGAAGAGACCATATTGATTTGGGAAGGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

448

Amino Acids

51.09

Weight (kDa)

5.98

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 118 - 208 1.1e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 714
AccB1I GGYRCC 1 cut(s) 320
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 3 cut(s) 432, 825, 971
AclWI GGATC 3 cut(s) 816, 829, 1067
AcoI YGGCCR 2 cut(s) 958, 968
AcuI CTGAAG 2 cut(s) 861, 1131
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 1 cut(s) 1233
AfiI CCNNNNNNNGG 3 cut(s) 47, 209, 1305
AflII CTTAAG 2 cut(s) 271, 443
AgsI TTSAA 8 cut(s) 65, 428, 562, 583, 670, 998, 1004, 1022
AhlI ACTAGT 1 cut(s) 605
AjnI CCWGG 1 cut(s) 1104
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AluBI AGCT 5 cut(s) 696, 839, 1101, 1115, 1283
AluI AGCT 5 cut(s) 696, 839, 1101, 1115, 1283
Alw21I GWGCWC 2 cut(s) 698, 806
Alw26I GTCTC 4 cut(s) 529, 1183, 1237, 1311
AlwI GGATC 3 cut(s) 816, 829, 1067
Ama87I CYCGRG 1 cut(s) 593
AoxI GGCC 2 cut(s) 958, 968
ApeKI GCWGC 2 cut(s) 349, 1075
AsiSI GCGATCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 5 cut(s) 422, 446, 764, 941, 1022
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 1 cut(s) 38
BalI TGGCCA 1 cut(s) 960
BamHI GGATCC 1 cut(s) 821
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 2 cut(s) 491, 549
Bbv12I GWGCWC 2 cut(s) 698, 806
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 2 cut(s) 361, 1087
BccI CCATC 4 cut(s) 136, 174, 410, 950
BciT130I CCWGG 1 cut(s) 1106
BciVI GTATCC 1 cut(s) 45
BcoDI GTCTC 4 cut(s) 529, 1183, 1237, 1311
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 7 cut(s) 42, 56, 78, 606, 945, 1193, 1310
BfrI CTTAAG 2 cut(s) 271, 443
BfuI GTATCC 1 cut(s) 45
BglII AGATCT 1 cut(s) 763
BisI GCNGC 3 cut(s) 350, 971, 1076
BlsI GCNGC 3 cut(s) 351, 972, 1077
Bme1390I CCNGG 1 cut(s) 1106
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 3 cut(s) 75, 322, 823
BmrFI CCNGG 1 cut(s) 1106
BmsI GCATC 3 cut(s) 81, 631, 883
BpiI GAAGAC 2 cut(s) 491, 549
BplI GAGNNNNNCTC 2 cut(s) 1283, 1315
BpmI CTGGAG 1 cut(s) 1199
Bpu10I CCTNAGC 1 cut(s) 531
BsaBI GATNNNNATC 2 cut(s) 165, 768
BsaHI GRCGYC 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 1311
BsaJI CCNNGG 3 cut(s) 324, 344, 775
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 209, 1305
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 1182, 1260
Bse3DI GCAATG 1 cut(s) 651
Bse8I GATNNNNATC 2 cut(s) 165, 768
BseBI CCWGG 1 cut(s) 1106
BseDI CCNNGG 3 cut(s) 324, 344, 775
BseGI GGATG 6 cut(s) 10, 166, 344, 646, 679, 868
BseJI GATNNNNATC 2 cut(s) 165, 768
BseLI CCNNNNNNNGG 3 cut(s) 47, 209, 1305
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 3 cut(s) 545, 683, 1232
BseNI ACTGG 2 cut(s) 1182, 1260
BseRI GAGGAG 2 cut(s) 519, 1285
BseXI GCAGC 2 cut(s) 361, 1087
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 960, 970
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 698, 806
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 3 cut(s) 47, 209, 1305
BsmAI GTCTC 4 cut(s) 529, 1183, 1237, 1311
BsnI GGCC 2 cut(s) 960, 970
Bso31I GGTCTC 1 cut(s) 1311
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 2 cut(s) 698, 806
Bsp143I GATC 5 cut(s) 160, 763, 769, 821, 1059
Bsp19I CCATGG 1 cut(s) 775
BspACI CCGC 3 cut(s) 432, 825, 971
BspANI GGCC 2 cut(s) 960, 970
BspCNI CTCAG 3 cut(s) 544, 684, 1233
BspLI GGNNCC 3 cut(s) 75, 322, 823
BspPI GGATC 3 cut(s) 816, 829, 1067
BspT107I GGYRCC 1 cut(s) 320
BspTI CTTAAG 2 cut(s) 271, 443
BspTNI GGTCTC 1 cut(s) 1311
BsrDI GCAATG 1 cut(s) 651
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 2 cut(s) 1182, 1260
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 3 cut(s) 324, 344, 775
BssMI GATC 5 cut(s) 160, 763, 769, 821, 1059
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 324, 775
Bst2UI CCWGG 1 cut(s) 1106
Bst4CI ACNGT 2 cut(s) 263, 490
Bst6I CTCTTC 3 cut(s) 932, 1045, 1309
BstACI GRCGYC 1 cut(s) 82
BstAFI CTTAAG 2 cut(s) 271, 443
BstC8I GCNNGC 2 cut(s) 157, 403
BstDEI CTNAG 5 cut(s) 531, 692, 1148, 1241, 1288
BstDSI CCRYGG 2 cut(s) 344, 775
BstF5I GGATG 6 cut(s) 10, 166, 344, 646, 679, 868
BstKTI GATC 5 cut(s) 163, 766, 772, 824, 1062
BstMAI GTCTC 4 cut(s) 529, 1183, 1237, 1311
BstMBI GATC 5 cut(s) 160, 763, 769, 821, 1059
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 1106
BstSCI CCNGG 1 cut(s) 1104
BstV1I GCAGC 2 cut(s) 361, 1087
BstV2I GAAGAC 2 cut(s) 491, 549
BstX2I RGATCY 2 cut(s) 763, 821
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 2 cut(s) 763, 821
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 2 cut(s) 960, 970
BtgI CCRYGG 2 cut(s) 344, 775
BtsCI GGATG 6 cut(s) 10, 166, 344, 646, 679, 868
BtsI GCAGTG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 542
Cac8I GCNNGC 2 cut(s) 157, 403
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 38
CseI GACGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 1232
CviAII CATG 4 cut(s) 133, 521, 776, 851
CviQI GTAC 1 cut(s) 1232
DdeI CTNAG 5 cut(s) 531, 692, 1148, 1241, 1288
DpnI GATC 5 cut(s) 162, 765, 771, 823, 1061
DpnII GATC 5 cut(s) 160, 763, 769, 821, 1059
EaeI YGGCCR 2 cut(s) 958, 968
Eam1104I CTCTTC 3 cut(s) 932, 1045, 1309
EarI CTCTTC 3 cut(s) 932, 1045, 1309
Ecl136II GAGCTC 1 cut(s) 696
Eco130I CCWWGG 2 cut(s) 324, 775
Eco24I GRGCYC 1 cut(s) 698
Eco31I GGTCTC 1 cut(s) 1311
Eco47I GGWCC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 696
Eco57I CTGAAG 2 cut(s) 861, 1131
Eco88I CYCGRG 1 cut(s) 593
EcoICRI GAGCTC 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 1104
EcoT14I CCWWGG 2 cut(s) 324, 775
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 2 cut(s) 324, 775
FaeI CATG 4 cut(s) 136, 524, 779, 854
FatI CATG 4 cut(s) 132, 520, 775, 850
Fnu4HI GCNGC 3 cut(s) 350, 971, 1076
FokI GGATG 6 cut(s) 17, 153, 351, 653, 686, 875
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 3 cut(s) 350, 971, 1076
FspBI CTAG 7 cut(s) 42, 56, 78, 606, 945, 1193, 1310
GluI GCNGC 3 cut(s) 350, 971, 1076
GsuI CTGGAG 1 cut(s) 1199
HaeIII GGCC 2 cut(s) 960, 970
HapII CCGG 1 cut(s) 71
HgaI GACGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 4 cut(s) 136, 524, 779, 854
HindIII AAGCTT 2 cut(s) 1113, 1281
HinfI GANTC 3 cut(s) 65, 625, 1095
HpaII CCGG 1 cut(s) 71
HphI GGTGA 5 cut(s) 422, 446, 764, 941, 1022
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 2 cut(s) 13, 1279
Hpy188III TCNNGA 5 cut(s) 595, 767, 986, 1022, 1063
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 8 cut(s) 226, 422, 466, 664, 1221, 1243, 1305, 1329
HpyCH4III ACNGT 2 cut(s) 263, 490
HpyCH4IV ACGT 1 cut(s) 678
HpyCH4V TGCA 4 cut(s) 94, 155, 644, 1237
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 5 cut(s) 531, 692, 1148, 1241, 1288
HpySE526I ACGT 1 cut(s) 678
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 4 cut(s) 136, 524, 779, 854
Kzo9I GATC 5 cut(s) 160, 763, 769, 821, 1059
LmnI GCTCC 1 cut(s) 1045
Lsp1109I GCAGC 2 cut(s) 361, 1087
LweI GCATC 3 cut(s) 81, 631, 883
MaeI CTAG 7 cut(s) 42, 56, 78, 606, 945, 1193, 1310
MaeII ACGT 1 cut(s) 678
MaeIII GTNAC 1 cut(s) 263
MalI GATC 5 cut(s) 162, 765, 771, 823, 1061
MboI GATC 5 cut(s) 160, 763, 769, 821, 1059
MfeI CAATTG 1 cut(s) 107
MflI RGATCY 2 cut(s) 763, 821
MhlI GDGCHC 2 cut(s) 698, 806
MlsI TGGCCA 1 cut(s) 960
MluCI AATT 4 cut(s) 107, 292, 869, 1211
MluNI TGGCCA 1 cut(s) 960
MlyI GAGTC 1 cut(s) 1104
Mox20I TGGCCA 1 cut(s) 960
MscI TGGCCA 1 cut(s) 960
MseI TTAA 4 cut(s) 249, 272, 444, 552
MslI CAYNNNNRTG 3 cut(s) 135, 137, 855
Msp20I TGGCCA 1 cut(s) 960
MspCI CTTAAG 2 cut(s) 271, 443
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 1106
MunI CAATTG 1 cut(s) 107
MvaI CCWGG 1 cut(s) 1106
MwoI GCNNNNNNNGC 1 cut(s) 156
NcoI CCATGG 1 cut(s) 775
NdeII GATC 5 cut(s) 160, 763, 769, 821, 1059
NlaIII CATG 4 cut(s) 136, 524, 779, 854
NlaIV GGNNCC 3 cut(s) 75, 322, 823
PfeI GAWTC 2 cut(s) 65, 625
PflFI GACNNNGTC 1 cut(s) 490
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 3 cut(s) 351, 972, 1077
Ple19I CGATCG 1 cut(s) 163
PleI GAGTC 1 cut(s) 1103
PpsI GAGTC 1 cut(s) 1103
PsiI TTATAA 1 cut(s) 714
Psp124BI GAGCTC 1 cut(s) 698
Psp6I CCWGG 1 cut(s) 1104
PspGI CCWGG 1 cut(s) 1104
PspN4I GGNNCC 3 cut(s) 75, 322, 823
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 2 cut(s) 763, 821
PsyI GACNNNGTC 1 cut(s) 490
PvuI CGATCG 1 cut(s) 163
RgaI GCGATCGC 1 cut(s) 163
RsaI GTAC 1 cut(s) 1233
RsaNI GTAC 1 cut(s) 1232
RseI CAYNNNNRTG 3 cut(s) 135, 137, 855
SacI GAGCTC 1 cut(s) 698
SaqAI TTAA 4 cut(s) 249, 272, 444, 552
SatI GCNGC 3 cut(s) 350, 971, 1076
Sau3AI GATC 5 cut(s) 160, 763, 769, 821, 1059
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 1 cut(s) 1104
ScrFI CCNGG 1 cut(s) 1106
SduI GDGCHC 2 cut(s) 698, 806
SfaAI GCGATCGC 1 cut(s) 163
SfaNI GCATC 3 cut(s) 81, 631, 883
SgfI GCGATCGC 1 cut(s) 163
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 3 cut(s) 135, 137, 855
SmlI CTYRAG 2 cut(s) 271, 443
SmoI CTYRAG 2 cut(s) 271, 443
SpeI ACTAGT 1 cut(s) 605
Sse9I AATT 4 cut(s) 107, 292, 869, 1211
SsiI CCGC 3 cut(s) 432, 825, 971
SspMI CTAG 7 cut(s) 42, 56, 78, 606, 945, 1193, 1310
SstI GAGCTC 1 cut(s) 698
StyD4I CCNGG 1 cut(s) 1104
StyI CCWWGG 2 cut(s) 324, 775
TaaI ACNGT 2 cut(s) 263, 490
TaiI ACGT 1 cut(s) 681
TaqI TCGA 4 cut(s) 215, 768, 806, 987
TasI AATT 4 cut(s) 107, 292, 869, 1211
TauI GCSGC 1 cut(s) 973
TfiI GAWTC 2 cut(s) 65, 625
Tru1I TTAA 4 cut(s) 249, 272, 444, 552
Tru9I TTAA 4 cut(s) 249, 272, 444, 552
TscAI CASTG 1 cut(s) 542
TseI GCWGC 2 cut(s) 349, 1075
TspDTI ATGAA 8 cut(s) 149, 294, 300, 371, 882, 894, 950, 1223
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 542
Tth111I GACNNNGTC 1 cut(s) 490
Van91I CCANNNNNTGG 1 cut(s) 209
Vha464I CTTAAG 2 cut(s) 271, 443
VpaK11BI GGWCC 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 7 cut(s) 42, 56, 78, 606, 945, 1193, 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.