pycom11g17160
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0014700
Physical Location & Seq
Reverse (-)
19206639 .. 19208222
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g17160.1

Sequence Viewer

Length: 1455 bp
ATGGGAATCTCGCGATATCATCTGTTTTGGTTGGTGAGAAAATGTAGGAAAATGAAAGAAACTGTGAGTGTTAAACCTTTCAGTTGTTTTCGCGAGTGTGGCGAGATGGATAGTTCGGGTTTGGGAGGTGGGTTTATGTCTGGTCCCAGTGGGGGGATACTAGACCTTGAATCGCCGGTTCCTAGACGCCAAGAGATGCAGTTGGGTCATCAATTGTTAGGGCATCACCAACATCACATGAATGTGATGGGGGGCGGCGGCATTGCAGGCGATCGTCATCCCATTGGGCTTGTGGAAGTGAAAGGGTCAGTCCCAAAAGTTGGTTCGACTATTGCCAAAGGGAAGGCAGTTGCTTCGTTTAATGGCAATAACGGTTACAATTTGAGTGATGACGATGAACAAAATTATACAGATGATGAAAGCATTGAAGGTGCCAAGGGAAAAAAGGGATCTCGATGGCAGCGGATGAAGTGGACAGATAATGTGGTCAGGCTTCTTATTGATGTTGTTGCTTGCGTGGGTGATGATGGTTCAGATGAAGGTGGTGAGGGGCTTAAGAGGAAATCTGGGATATTACAGAAGAAGGGTAAGTGGAAGACTGTGTCGCAAATAATGATTAGTAAAGGTTGTCATGTTTCTCCTCAGCAGTGTGAAGACAAGTTTAATGACTTGAACAAAAGGTATAAGAGGTTGAACGAAATTCTCGGGAGAGGAACTAGTTGTAGAGTGGTAGAGAATCCTGCTCTTATGGATGCAATGCCCCACCTCTCTGCCAAGGCGAAGGATGACGTTAGGAAGATACTGAGCTCAAAACACTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGAGGATACCTGACTGCCAAGAGCTCAATCCCCATGGCTATTCCCTACCTCTTGGGAGGTGCTCAAAAGACATTAATGGATCCGAGGAAGAAGAAGCTGAAGAAAACCATGATAGTGAGGATGATAAATTGGACAACGAAGATCATAACGATGCTGATAATGATAGGGAGAGAATGAGAAGAATGAGTGAGAGGAAGAAGGCTAGGGAAGAAGATGGCCATATGTGGCCACAACATGTTCCTCTCGATAGTTTTGAAGTTGAAGTGGGTGACTGTTTTCAAGACGCAACAAAGTCGTTATGGGAACGGAGAGATTGGATCAAGAAACAGAAGCTGCAACTTGAAGAGCAAAGAGTCAGCTTCCATGCTGAAGCTTTGGAGATTGAGAAGCAAAGGTATAAATGGCTAAGATATTGTAGCAAGAAAGACAGGGAACTGGAGAGGCTGAGACTGGAGAATGAGAGAATGAAATTAGAGAACGAGAGAAGGGTATTGCAACTGAGACAGAAGGAAGTGGAATTAGATTTGAGGAGGTCAGAAGCTTCCTTGGAGCCTTCCTCGCTTGGGCTAGGAAGAGATCATATAGATTTGGGAAGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

485

Amino Acids

55.39

Weight (kDa)

6.84

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 155 - 245 4.2e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 825
AccB1I GGYRCC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 320
AccII CGCG 2 cut(s) 13, 93
AciI CCGC 3 cut(s) 255, 258, 463
AclWI GGATC 4 cut(s) 457, 927, 940, 1178
AcoI YGGCCR 2 cut(s) 1069, 1079
AcsI RAATTY 1 cut(s) 699
AcuI CTGAAG 2 cut(s) 972, 1242
AcyI GRCGYC 1 cut(s) 187
AfiI CCNNNNNNNGG 4 cut(s) 152, 153, 320, 1416
AflII CTTAAG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 1087
AgsI TTSAA 8 cut(s) 170, 428, 673, 694, 1109, 1115, 1133, 1196
AhlI ACTAGT 1 cut(s) 716
AjuI GAANNNNNNNTTGG 2 cut(s) 307, 339
AluBI AGCT 7 cut(s) 807, 877, 950, 1186, 1212, 1226, 1394
AluI AGCT 7 cut(s) 807, 877, 950, 1186, 1212, 1226, 1394
Alw21I GWGCWC 3 cut(s) 809, 879, 917
Alw26I GTCTC 2 cut(s) 1294, 1348
AlwI GGATC 4 cut(s) 457, 927, 940, 1178
AlwNI CAGNNNCTG 1 cut(s) 1186
Ama87I CYCGRG 1 cut(s) 704
AoxI GGCC 2 cut(s) 1069, 1079
ApeKI GCWGC 2 cut(s) 460, 1186
ApoI RAATTY 1 cut(s) 699
AseI ATTAAT 1 cut(s) 927
AspS9I GGNCC 1 cut(s) 143
AsuHPI GGTGA 5 cut(s) 46, 218, 533, 557, 1133
AvaI CYCGRG 1 cut(s) 704
AvaII GGWCC 1 cut(s) 143
BalI TGGCCA 2 cut(s) 1071, 1081
BamHI GGATCC 1 cut(s) 932
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 2 cut(s) 809, 879
BbsI GAAGAC 2 cut(s) 602, 660
Bbv12I GWGCWC 3 cut(s) 809, 879, 917
BbvCI CCTCAGC 1 cut(s) 642
BbvI GCAGC 2 cut(s) 472, 1173
BccI CCATC 5 cut(s) 100, 241, 450, 521, 1061
BcgI CGANNNNNNTGC 4 cut(s) 336, 370, 1128, 1162
BciVI GTATCC 2 cut(s) 150, 852
BcoDI GTCTC 2 cut(s) 1294, 1348
BcuI ACTAGT 1 cut(s) 716
BfaI CTAG 5 cut(s) 161, 183, 717, 1056, 1421
BfrI CTTAAG 1 cut(s) 554
BfuI GTATCC 2 cut(s) 150, 852
BisI GCNGC 4 cut(s) 256, 259, 461, 1187
BlsI GCNGC 4 cut(s) 257, 260, 462, 1188
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 704
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 5 cut(s) 145, 180, 433, 934, 1404
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 4 cut(s) 186, 232, 742, 994
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 602, 660
BplI GAGNNNNNCTC 2 cut(s) 1394, 1426
BpmI CTGGAG 2 cut(s) 1310, 1325
Bpu10I CCTNAGC 1 cut(s) 642
BsaBI GATNNNNATC 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 187
BsaJI CCNNGG 5 cut(s) 435, 774, 886, 936, 1398
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 153, 320, 1416
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 3 cut(s) 147, 1293, 1308
Bse3DI GCAATG 2 cut(s) 261, 762
Bse8I GATNNNNATC 1 cut(s) 276
BseDI CCNNGG 5 cut(s) 435, 774, 886, 936, 1398
BseGI GGATG 5 cut(s) 277, 471, 757, 790, 979
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 4 cut(s) 152, 153, 320, 1416
BseMI GCAATG 2 cut(s) 261, 762
BseMII CTCAG 4 cut(s) 656, 794, 1289, 1343
BseNI ACTGG 3 cut(s) 147, 1293, 1308
BseRI GAGGAG 2 cut(s) 630, 1396
BseXI GCAGC 2 cut(s) 472, 1173
Bsh1236I CGCG 2 cut(s) 13, 93
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 1071, 1081
BshNI GGYRCC 1 cut(s) 431
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 3 cut(s) 809, 879, 917
BsiHKCI CYCGRG 1 cut(s) 704
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 2 cut(s) 129, 296
BslI CCNNNNNNNGG 4 cut(s) 152, 153, 320, 1416
BsmAI GTCTC 2 cut(s) 1294, 1348
BsmFI GGGAC 2 cut(s) 129, 296
BsnI GGCC 2 cut(s) 1071, 1081
BsoBI CYCGRG 1 cut(s) 704
Bsp1286I GDGCHC 3 cut(s) 809, 879, 917
Bsp143I GATC 6 cut(s) 271, 449, 932, 994, 1170, 1429
Bsp19I CCATGG 1 cut(s) 886
Bsp68I TCGCGA 2 cut(s) 13, 93
BspACI CCGC 3 cut(s) 255, 258, 463
BspANI GGCC 2 cut(s) 1071, 1081
BspCNI CTCAG 4 cut(s) 655, 795, 1290, 1344
BspFNI CGCG 2 cut(s) 13, 93
BspLI GGNNCC 5 cut(s) 145, 180, 433, 934, 1404
BspPI GGATC 4 cut(s) 457, 927, 940, 1178
BspQI GCTCTTC 1 cut(s) 1191
BspT107I GGYRCC 1 cut(s) 431
BspTI CTTAAG 1 cut(s) 554
BsrDI GCAATG 2 cut(s) 261, 762
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 3 cut(s) 147, 1293, 1308
BssAI RCCGGY 1 cut(s) 175
BssECI CCNNGG 5 cut(s) 435, 774, 886, 936, 1398
BssMI GATC 6 cut(s) 271, 449, 932, 994, 1170, 1429
BssNI GRCGYC 1 cut(s) 187
BssT1I CCWWGG 4 cut(s) 435, 774, 886, 1398
Bst4CI ACNGT 4 cut(s) 64, 374, 601, 1127
Bst6I CTCTTC 2 cut(s) 1191, 1420
BstACI GRCGYC 1 cut(s) 187
BstAFI CTTAAG 1 cut(s) 554
BstC8I GCNNGC 2 cut(s) 268, 514
BstDEI CTNAG 5 cut(s) 642, 803, 1259, 1298, 1352
BstDSI CCRYGG 1 cut(s) 886
BstF5I GGATG 5 cut(s) 277, 471, 757, 790, 979
BstFNI CGCG 2 cut(s) 13, 93
BstKTI GATC 6 cut(s) 274, 452, 935, 997, 1173, 1432
BstMAI GTCTC 2 cut(s) 1294, 1348
BstMBI GATC 6 cut(s) 271, 449, 932, 994, 1170, 1429
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 3 cut(s) 99, 267, 1411
BstNSI RCATGY 1 cut(s) 1091
BstUI CGCG 2 cut(s) 13, 93
BstV1I GCAGC 2 cut(s) 472, 1173
BstV2I GAAGAC 2 cut(s) 602, 660
BstX2I RGATCY 2 cut(s) 449, 932
BstYI RGATCY 2 cut(s) 449, 932
BsuI GTATCC 2 cut(s) 150, 852
BsuRI GGCC 2 cut(s) 1071, 1081
BtgI CCRYGG 1 cut(s) 886
BtsCI GGATG 5 cut(s) 277, 471, 757, 790, 979
BtsI GCAGTG 1 cut(s) 653
BtsIMutI CAGTG 2 cut(s) 154, 653
BtuMI TCGCGA 2 cut(s) 13, 93
Cac8I GCNNGC 2 cut(s) 268, 514
CaiI CAGNNNCTG 1 cut(s) 1186
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 143
CseI GACGC 2 cut(s) 195, 1145
CviAII CATG 6 cut(s) 238, 632, 887, 962, 1088, 1217
DdeI CTNAG 5 cut(s) 642, 803, 1259, 1298, 1352
DpnI GATC 6 cut(s) 273, 451, 934, 996, 1172, 1431
DpnII GATC 6 cut(s) 271, 449, 932, 994, 1170, 1429
EaeI YGGCCR 2 cut(s) 1069, 1079
Eam1104I CTCTTC 2 cut(s) 1191, 1420
EarI CTCTTC 2 cut(s) 1191, 1420
Ecl136II GAGCTC 2 cut(s) 807, 877
Eco130I CCWWGG 4 cut(s) 435, 774, 886, 1398
Eco24I GRGCYC 2 cut(s) 809, 879
Eco32I GATATC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 143
Eco53kI GAGCTC 2 cut(s) 807, 877
Eco57I CTGAAG 2 cut(s) 972, 1242
Eco88I CYCGRG 1 cut(s) 704
EcoICRI GAGCTC 2 cut(s) 807, 877
EcoRV GATATC 1 cut(s) 17
EcoT14I CCWWGG 4 cut(s) 435, 774, 886, 1398
EcoT38I GRGCYC 2 cut(s) 809, 879
ErhI CCWWGG 4 cut(s) 435, 774, 886, 1398
FaeI CATG 6 cut(s) 241, 635, 890, 965, 1091, 1220
FaqI GGGAC 2 cut(s) 129, 296
FatI CATG 6 cut(s) 237, 631, 886, 961, 1087, 1216
FauNDI CATATG 1 cut(s) 1074
Fnu4HI GCNGC 4 cut(s) 256, 259, 461, 1187
FokI GGATG 5 cut(s) 264, 478, 764, 797, 986
FriOI GRGCYC 2 cut(s) 809, 879
Fsp4HI GCNGC 4 cut(s) 256, 259, 461, 1187
FspBI CTAG 5 cut(s) 161, 183, 717, 1056, 1421
GluI GCNGC 4 cut(s) 256, 259, 461, 1187
GsuI CTGGAG 2 cut(s) 1310, 1325
HaeIII GGCC 2 cut(s) 1071, 1081
HapII CCGG 1 cut(s) 176
HgaI GACGC 2 cut(s) 195, 1145
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 6 cut(s) 241, 635, 890, 965, 1091, 1220
HindIII AAGCTT 2 cut(s) 1224, 1392
HinfI GANTC 4 cut(s) 6, 170, 736, 1206
HpaII CCGG 1 cut(s) 176
HphI GGTGA 5 cut(s) 46, 218, 533, 557, 1133
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 3 cut(s) 535, 937, 1390
Hpy188III TCNNGA 7 cut(s) 12, 92, 453, 706, 1097, 1133, 1174
Hpy8I GTNNAC 1 cut(s) 474
HpyCH4III ACNGT 4 cut(s) 64, 374, 601, 1127
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 5 cut(s) 199, 266, 755, 1189, 1348
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 267, 1411
HpyF3I CTNAG 5 cut(s) 642, 803, 1259, 1298, 1352
HpySE526I ACGT 1 cut(s) 789
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 6 cut(s) 241, 635, 890, 965, 1091, 1220
Kzo9I GATC 6 cut(s) 271, 449, 932, 994, 1170, 1429
LguI GCTCTTC 1 cut(s) 1191
LmnI GCTCC 1 cut(s) 1402
Lsp1109I GCAGC 2 cut(s) 472, 1173
LweI GCATC 4 cut(s) 186, 232, 742, 994
MaeI CTAG 5 cut(s) 161, 183, 717, 1056, 1421
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 2 cut(s) 374, 1121
MalI GATC 6 cut(s) 273, 451, 934, 996, 1172, 1431
MboI GATC 6 cut(s) 271, 449, 932, 994, 1170, 1429
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 2 cut(s) 449, 932
MhlI GDGCHC 3 cut(s) 809, 879, 917
MlsI TGGCCA 2 cut(s) 1071, 1081
MluCI AATT 7 cut(s) 212, 379, 403, 699, 980, 1322, 1370
MluNI TGGCCA 2 cut(s) 1071, 1081
MlyI GAGTC 1 cut(s) 1215
Mox20I TGGCCA 2 cut(s) 1071, 1081
MscI TGGCCA 2 cut(s) 1071, 1081
MseI TTAA 6 cut(s) 72, 360, 555, 663, 927, 1453
MslI CAYNNNNRTG 4 cut(s) 240, 242, 966, 1002
Msp20I TGGCCA 2 cut(s) 1071, 1081
MspA1I CMGCKG 1 cut(s) 463
MspCI CTTAAG 1 cut(s) 554
MspI CCGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 212
MvnI CGCG 2 cut(s) 13, 93
MwoI GCNNNNNNNGC 3 cut(s) 99, 267, 1411
NcoI CCATGG 1 cut(s) 886
NdeI CATATG 1 cut(s) 1074
NdeII GATC 6 cut(s) 271, 449, 932, 994, 1170, 1429
NlaIII CATG 6 cut(s) 241, 635, 890, 965, 1091, 1220
NlaIV GGNNCC 5 cut(s) 145, 180, 433, 934, 1404
NmuCI GTSAC 1 cut(s) 1121
NruI TCGCGA 2 cut(s) 13, 93
NspI RCATGY 1 cut(s) 1091
PciI ACATGT 1 cut(s) 1087
PciSI GCTCTTC 1 cut(s) 1191
PfeI GAWTC 3 cut(s) 6, 170, 736
PflFI GACNNNGTC 1 cut(s) 601
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 4 cut(s) 257, 260, 462, 1188
Ple19I CGATCG 1 cut(s) 274
PleI GAGTC 1 cut(s) 1214
PpsI GAGTC 1 cut(s) 1214
PscI ACATGT 1 cut(s) 1087
PshBI ATTAAT 1 cut(s) 927
PsiI TTATAA 1 cut(s) 825
Psp124BI GAGCTC 2 cut(s) 809, 879
PspN4I GGNNCC 5 cut(s) 145, 180, 433, 934, 1404
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 1186
PsuI RGATCY 2 cut(s) 449, 932
PsyI GACNNNGTC 1 cut(s) 601
PvuI CGATCG 1 cut(s) 274
RruI TCGCGA 2 cut(s) 13, 93
RseI CAYNNNNRTG 4 cut(s) 240, 242, 966, 1002
SacI GAGCTC 2 cut(s) 809, 879
SapI GCTCTTC 1 cut(s) 1191
SaqAI TTAA 6 cut(s) 72, 360, 555, 663, 927, 1453
SatI GCNGC 4 cut(s) 256, 259, 461, 1187
Sau3AI GATC 6 cut(s) 271, 449, 932, 994, 1170, 1429
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 1215
SduI GDGCHC 3 cut(s) 809, 879, 917
SfaNI GCATC 4 cut(s) 186, 232, 742, 994
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 4 cut(s) 240, 242, 966, 1002
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
SpeI ACTAGT 1 cut(s) 716
Sse9I AATT 7 cut(s) 212, 379, 403, 699, 980, 1322, 1370
SsiI CCGC 3 cut(s) 255, 258, 463
SspMI CTAG 5 cut(s) 161, 183, 717, 1056, 1421
SstI GAGCTC 2 cut(s) 809, 879
StyI CCWWGG 4 cut(s) 435, 774, 886, 1398
TaaI ACNGT 4 cut(s) 64, 374, 601, 1127
TaiI ACGT 1 cut(s) 792
TaqI TCGA 3 cut(s) 326, 454, 1098
TasI AATT 7 cut(s) 212, 379, 403, 699, 980, 1322, 1370
TauI GCSGC 2 cut(s) 258, 261
TfiI GAWTC 3 cut(s) 6, 170, 736
Tru1I TTAA 6 cut(s) 72, 360, 555, 663, 927, 1453
Tru9I TTAA 6 cut(s) 72, 360, 555, 663, 927, 1453
TscAI CASTG 2 cut(s) 154, 653
TseFI GTSAC 1 cut(s) 1121
TseI GCWGC 2 cut(s) 460, 1186
Tsp45I GTSAC 1 cut(s) 1121
TspDTI ATGAA 7 cut(s) 68, 254, 411, 432, 482, 552, 1334
TspGWI ACGGA 1 cut(s) 1174
TspRI CASTG 2 cut(s) 154, 653
Tth111I GACNNNGTC 1 cut(s) 601
Van91I CCANNNNNTGG 1 cut(s) 320
Vha464I CTTAAG 1 cut(s) 554
VpaK11BI GGWCC 1 cut(s) 143
VspI ATTAAT 1 cut(s) 927
XapI RAATTY 1 cut(s) 699
XceI RCATGY 1 cut(s) 1091
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 5 cut(s) 161, 183, 717, 1056, 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.