MD11G1198200.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014700
Physical Location & Seq
Reverse (-)
28573310 .. 28575172
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1198200.v1.1.491

Sequence Viewer

Length: 1323 bp
ATGGATAGTTCGGGTTTGGGAGGTGGGTTTTTGTCTGGTCCCAGTGGGGGGATACTAGACCTTGAATTGCCGGTTCCTAGATTGTTAGGACATCACCAACATAACATGAATGTGATGGGGGGCGGCGGCATTGCAGGCGATCGTCATCCTATTGGGCTTGTGGAAGTGAAAGAGTCAGTCCCAAAAGTTGGTTCGACTATTGCCAAAGGGAAGGCAGTTGCTTCGTTTAATGGCAATAACGGTTACAATTTGAGTGATGACGATGAACAAAATTATACAGATGATGAGAGCATTGAAGGTGCCAAGGGAAAAAAGGGATCTCGATGGCAGCGGATGAAGTGGACAGATAATGTGGTCAGGCTTCTTATAGATGTTGTTGCTTGCGTGGGTGATGATGGTTCAGTTGAAGGTGGTGAGGGGCTTAAGAGGAAATCTAGGATATTACAGAAGAAGGGTAAGTGGAAGACTGTGTCGCAAATAATGATTAGTAAAGGTTGTCATGTTTCTCCTCAGCAGTGTGAAGACAAGTTTAATGACTTGAACAAAAGGTATAAGAGGTTGAACGATATTCTCGGGAGAGGAACTACTTGTAGAGTGGTAGAGAATCCTGCTCTTATGGATGCAATGCCCCACCTCTCTGCCAAGGCGATGGATGACGTTAGGAAGATACTGAGCTCAAAACACTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGAGGATATCTGACTGCCAAGATCTCAATCCCCATGGCTATTCCCTACCTCTTGGGAGGTGCTCAAAAGACATTAACGGATCCGAGGAAGAAGAAGCTGAAGAAAACCATGATAGTGAGGATGATAAATTGGACAACGAAGATCATAACGATGCTGATAATGATAGGGAGAGAATGAGAAGAATGAGTGAGAGGAAGAAGGCTAGGGAAGAAGATGGCCATTTGTGGCCACAACATGTTCCTCTCGATAGTTTTGAAGTTGAAGTGGGTGACTGTTTTCAGGACACAACAAAGTCGTTATGGGAACGAAGAGATTGGATCAAGAAACAGAAGCTGCAACTTGAAGAGCAAAGAGTCAGCTTCCATGCTGAAGCTTTGGAGATTGAGAAGCAAAGGTATAAATGGCTGAGATATTGTAGCAAGAAAGACAGGGAACTGGAGAGGCTGAGACTGGAGAATGAGAGAATGAAATTAGAGAACGAGAGAAGGGTATTGCAACTGAGACAGAAGGAAGTGGAATTAGATTTGAGGAGGTCAGAAGCTTCCTTGGAGCCTTCCTCGCTTGGGCTAGGAAGAGATCATATTGATTTGGGAAGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

441

Amino Acids

50.18

Weight (kDa)

6.19

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 111 - 201 6.4e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 693
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 188
AciI CCGC 3 cut(s) 123, 126, 331
AclWI GGATC 4 cut(s) 325, 795, 808, 1046
AcoI YGGCCR 2 cut(s) 937, 947
AcuI CTGAAG 2 cut(s) 840, 1110
AfiI CCNNNNNNNGG 4 cut(s) 47, 48, 188, 1284
AflII CTTAAG 1 cut(s) 422
AflIII ACRYGT 1 cut(s) 955
AgsI TTSAA 8 cut(s) 65, 296, 407, 541, 562, 977, 983, 1064
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 6 cut(s) 675, 818, 1054, 1080, 1094, 1262
AluI AGCT 6 cut(s) 675, 818, 1054, 1080, 1094, 1262
Alw21I GWGCWC 2 cut(s) 677, 785
Alw26I GTCTC 2 cut(s) 1162, 1216
AlwI GGATC 4 cut(s) 325, 795, 808, 1046
AlwNI CAGNNNCTG 1 cut(s) 1054
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 2 cut(s) 937, 947
ApeKI GCWGC 2 cut(s) 328, 1054
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 4 cut(s) 86, 401, 425, 1001
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 38
BalI TGGCCA 2 cut(s) 939, 949
BamHI GGATCC 1 cut(s) 800
BanI GGYRCC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 677
BbsI GAAGAC 2 cut(s) 470, 528
Bbv12I GWGCWC 2 cut(s) 677, 785
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 340, 1041
BccI CCATC 5 cut(s) 109, 318, 389, 643, 929
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciVI GTATCC 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 1162, 1216
BfaI CTAG 5 cut(s) 56, 78, 435, 924, 1289
BfrI CTTAAG 1 cut(s) 422
BfuI GTATCC 1 cut(s) 45
BglII AGATCT 1 cut(s) 742
BisI GCNGC 4 cut(s) 124, 127, 329, 1055
BlsI GCNGC 4 cut(s) 125, 128, 330, 1056
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 5 cut(s) 40, 75, 301, 802, 1272
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 610, 862
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 470, 528
BplI GAGNNNNNCTC 2 cut(s) 1262, 1294
BpmI CTGGAG 2 cut(s) 1178, 1193
Bpu10I CCTNAGC 1 cut(s) 510
BsaBI GATNNNNATC 2 cut(s) 144, 747
BsaJI CCNNGG 5 cut(s) 303, 642, 754, 804, 1266
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 48, 188, 1284
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 3 cut(s) 42, 1161, 1176
Bse3DI GCAATG 2 cut(s) 129, 630
Bse8I GATNNNNATC 2 cut(s) 144, 747
BseDI CCNNGG 5 cut(s) 303, 642, 754, 804, 1266
BseGI GGATG 5 cut(s) 145, 339, 625, 658, 847
BseJI GATNNNNATC 2 cut(s) 144, 747
BseLI CCNNNNNNNGG 4 cut(s) 47, 48, 188, 1284
BseMI GCAATG 2 cut(s) 129, 630
BseMII CTCAG 5 cut(s) 524, 662, 1118, 1157, 1211
BseNI ACTGG 3 cut(s) 42, 1161, 1176
BseRI GAGGAG 2 cut(s) 498, 1264
BseXI GCAGC 2 cut(s) 340, 1041
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 939, 949
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 2 cut(s) 677, 785
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 1 cut(s) 71
BslFI GGGAC 2 cut(s) 24, 164
BslI CCNNNNNNNGG 4 cut(s) 47, 48, 188, 1284
BsmAI GTCTC 2 cut(s) 1162, 1216
BsmFI GGGAC 2 cut(s) 24, 164
BsnI GGCC 2 cut(s) 939, 949
BsoBI CYCGRG 1 cut(s) 572
Bsp1286I GDGCHC 2 cut(s) 677, 785
Bsp143I GATC 7 cut(s) 139, 317, 742, 800, 862, 1038, 1297
Bsp19I CCATGG 1 cut(s) 754
BspACI CCGC 3 cut(s) 123, 126, 331
BspANI GGCC 2 cut(s) 939, 949
BspCNI CTCAG 5 cut(s) 523, 663, 1119, 1158, 1212
BspLI GGNNCC 5 cut(s) 40, 75, 301, 802, 1272
BspPI GGATC 4 cut(s) 325, 795, 808, 1046
BspQI GCTCTTC 1 cut(s) 1059
BspT107I GGYRCC 1 cut(s) 299
BspTI CTTAAG 1 cut(s) 422
BsrDI GCAATG 2 cut(s) 129, 630
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 3 cut(s) 42, 1161, 1176
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 5 cut(s) 303, 642, 754, 804, 1266
BssMI GATC 7 cut(s) 139, 317, 742, 800, 862, 1038, 1297
BssT1I CCWWGG 4 cut(s) 303, 642, 754, 1266
Bst4CI ACNGT 3 cut(s) 242, 469, 995
Bst6I CTCTTC 3 cut(s) 1024, 1059, 1288
BstAFI CTTAAG 1 cut(s) 422
BstC8I GCNNGC 2 cut(s) 136, 382
BstDEI CTNAG 5 cut(s) 510, 671, 1127, 1166, 1220
BstDSI CCRYGG 1 cut(s) 754
BstF5I GGATG 5 cut(s) 145, 339, 625, 658, 847
BstKTI GATC 7 cut(s) 142, 320, 745, 803, 865, 1041, 1300
BstMAI GTCTC 2 cut(s) 1162, 1216
BstMBI GATC 7 cut(s) 139, 317, 742, 800, 862, 1038, 1297
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 135, 1279
BstNSI RCATGY 1 cut(s) 959
BstV1I GCAGC 2 cut(s) 340, 1041
BstV2I GAAGAC 2 cut(s) 470, 528
BstX2I RGATCY 3 cut(s) 317, 742, 800
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 3 cut(s) 317, 742, 800
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 2 cut(s) 939, 949
BtgI CCRYGG 1 cut(s) 754
BtgZI GCGATG 1 cut(s) 662
BtsCI GGATG 5 cut(s) 145, 339, 625, 658, 847
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 2 cut(s) 49, 521
Cac8I GCNNGC 2 cut(s) 136, 382
CaiI CAGNNNCTG 1 cut(s) 1054
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 38
CviAII CATG 6 cut(s) 106, 500, 755, 830, 956, 1085
DdeI CTNAG 5 cut(s) 510, 671, 1127, 1166, 1220
DpnI GATC 7 cut(s) 141, 319, 744, 802, 864, 1040, 1299
DpnII GATC 7 cut(s) 139, 317, 742, 800, 862, 1038, 1297
EaeI YGGCCR 2 cut(s) 937, 947
Eam1104I CTCTTC 3 cut(s) 1024, 1059, 1288
EarI CTCTTC 3 cut(s) 1024, 1059, 1288
Ecl136II GAGCTC 1 cut(s) 675
Eco130I CCWWGG 4 cut(s) 303, 642, 754, 1266
Eco24I GRGCYC 1 cut(s) 677
Eco32I GATATC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 675
Eco57I CTGAAG 2 cut(s) 840, 1110
Eco88I CYCGRG 1 cut(s) 572
EcoICRI GAGCTC 1 cut(s) 675
EcoRV GATATC 1 cut(s) 729
EcoT14I CCWWGG 4 cut(s) 303, 642, 754, 1266
EcoT38I GRGCYC 1 cut(s) 677
ErhI CCWWGG 4 cut(s) 303, 642, 754, 1266
FaeI CATG 6 cut(s) 109, 503, 758, 833, 959, 1088
FaqI GGGAC 2 cut(s) 24, 164
FatI CATG 6 cut(s) 105, 499, 754, 829, 955, 1084
Fnu4HI GCNGC 4 cut(s) 124, 127, 329, 1055
FokI GGATG 5 cut(s) 132, 346, 632, 665, 854
FriOI GRGCYC 1 cut(s) 677
Fsp4HI GCNGC 4 cut(s) 124, 127, 329, 1055
FspBI CTAG 5 cut(s) 56, 78, 435, 924, 1289
GluI GCNGC 4 cut(s) 124, 127, 329, 1055
GsuI CTGGAG 2 cut(s) 1178, 1193
HaeIII GGCC 2 cut(s) 939, 949
HapII CCGG 1 cut(s) 71
Hin1II CATG 6 cut(s) 109, 503, 758, 833, 959, 1088
HindIII AAGCTT 2 cut(s) 1092, 1260
HinfI GANTC 3 cut(s) 173, 604, 1074
HpaII CCGG 1 cut(s) 71
HphI GGTGA 4 cut(s) 86, 401, 425, 1001
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 3 cut(s) 733, 805, 1258
Hpy188III TCNNGA 5 cut(s) 321, 574, 965, 1001, 1042
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 9 cut(s) 205, 290, 401, 445, 913, 1200, 1222, 1284, 1308
HpyCH4III ACNGT 3 cut(s) 242, 469, 995
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 4 cut(s) 134, 623, 1057, 1216
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 1279
HpyF3I CTNAG 5 cut(s) 510, 671, 1127, 1166, 1220
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 6 cut(s) 109, 503, 758, 833, 959, 1088
Kzo9I GATC 7 cut(s) 139, 317, 742, 800, 862, 1038, 1297
LguI GCTCTTC 1 cut(s) 1059
LmnI GCTCC 1 cut(s) 1270
Lsp1109I GCAGC 2 cut(s) 340, 1041
LweI GCATC 2 cut(s) 610, 862
MaeI CTAG 5 cut(s) 56, 78, 435, 924, 1289
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 2 cut(s) 242, 989
MalI GATC 7 cut(s) 141, 319, 744, 802, 864, 1040, 1299
MboI GATC 7 cut(s) 139, 317, 742, 800, 862, 1038, 1297
MflI RGATCY 3 cut(s) 317, 742, 800
MhlI GDGCHC 2 cut(s) 677, 785
MlsI TGGCCA 2 cut(s) 939, 949
MluCI AATT 6 cut(s) 65, 247, 271, 848, 1190, 1238
MluNI TGGCCA 2 cut(s) 939, 949
MlyI GAGTC 2 cut(s) 182, 1083
Mox20I TGGCCA 2 cut(s) 939, 949
MscI TGGCCA 2 cut(s) 939, 949
MseI TTAA 5 cut(s) 228, 423, 531, 795, 1321
MslI CAYNNNNRTG 3 cut(s) 110, 834, 870
Msp20I TGGCCA 2 cut(s) 939, 949
MspA1I CMGCKG 1 cut(s) 331
MspCI CTTAAG 1 cut(s) 422
MspI CCGG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 135, 1279
NcoI CCATGG 1 cut(s) 754
NdeII GATC 7 cut(s) 139, 317, 742, 800, 862, 1038, 1297
NlaIII CATG 6 cut(s) 109, 503, 758, 833, 959, 1088
NlaIV GGNNCC 5 cut(s) 40, 75, 301, 802, 1272
NmuCI GTSAC 1 cut(s) 989
NspI RCATGY 1 cut(s) 959
PciI ACATGT 1 cut(s) 955
PciSI GCTCTTC 1 cut(s) 1059
PfeI GAWTC 1 cut(s) 604
PflFI GACNNNGTC 1 cut(s) 469
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 4 cut(s) 125, 128, 330, 1056
Ple19I CGATCG 1 cut(s) 142
PleI GAGTC 2 cut(s) 181, 1082
PpsI GAGTC 2 cut(s) 181, 1082
PscI ACATGT 1 cut(s) 955
PsiI TTATAA 1 cut(s) 693
Psp124BI GAGCTC 1 cut(s) 677
PspN4I GGNNCC 5 cut(s) 40, 75, 301, 802, 1272
PspPI GGNCC 1 cut(s) 38
PstNI CAGNNNCTG 1 cut(s) 1054
PsuI RGATCY 3 cut(s) 317, 742, 800
PsyI GACNNNGTC 1 cut(s) 469
PvuI CGATCG 1 cut(s) 142
RseI CAYNNNNRTG 3 cut(s) 110, 834, 870
SacI GAGCTC 1 cut(s) 677
SapI GCTCTTC 1 cut(s) 1059
SaqAI TTAA 5 cut(s) 228, 423, 531, 795, 1321
SatI GCNGC 4 cut(s) 124, 127, 329, 1055
Sau3AI GATC 7 cut(s) 139, 317, 742, 800, 862, 1038, 1297
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 182, 1083
SduI GDGCHC 2 cut(s) 677, 785
SfaNI GCATC 2 cut(s) 610, 862
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 3 cut(s) 110, 834, 870
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 6 cut(s) 65, 247, 271, 848, 1190, 1238
SsiI CCGC 3 cut(s) 123, 126, 331
SspMI CTAG 5 cut(s) 56, 78, 435, 924, 1289
SstI GAGCTC 1 cut(s) 677
StyI CCWWGG 4 cut(s) 303, 642, 754, 1266
TaaI ACNGT 3 cut(s) 242, 469, 995
TaiI ACGT 1 cut(s) 660
TaqI TCGA 3 cut(s) 194, 322, 966
TasI AATT 6 cut(s) 65, 247, 271, 848, 1190, 1238
TauI GCSGC 2 cut(s) 126, 129
TfiI GAWTC 1 cut(s) 604
Tru1I TTAA 5 cut(s) 228, 423, 531, 795, 1321
Tru9I TTAA 5 cut(s) 228, 423, 531, 795, 1321
TscAI CASTG 2 cut(s) 49, 521
TseFI GTSAC 1 cut(s) 989
TseI GCWGC 2 cut(s) 328, 1054
Tsp45I GTSAC 1 cut(s) 989
TspDTI ATGAA 4 cut(s) 122, 279, 350, 1202
TspGWI ACGGA 1 cut(s) 813
TspRI CASTG 2 cut(s) 49, 521
Tth111I GACNNNGTC 1 cut(s) 469
Van91I CCANNNNNTGG 1 cut(s) 188
Vha464I CTTAAG 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 38
XceI RCATGY 1 cut(s) 959
XspI CTAG 5 cut(s) 56, 78, 435, 924, 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.