Rroxscaffold_1G00027050
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014700
Physical Location & Seq
Forward (+)
34073958 .. 34076367
2410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00027050.1

Sequence Viewer

Length: 1359 bp
ATGGATGGTTCAGGTTTGGGAGGTGGATTTTTGTCTGGTCCAAGTGGGGGGACACTAGACCTTGAATCCGCGATTCCTAGACACCAGGAGAAGCAGTTGGGTCTGCCGGGTTTAGCACATCATCAACATCATGGGATTGTGATGAGTGGTGTTGGAGTTGATCACCATCCTGTAGGGCTTGTAGAGGTGAAAGGGTCGATACCAAGAGGTACTTCGATGAATGTTGTAAAAGGGAAGGCGGTTGCACCTTTTAATAGCAATGCTTACAATTTGAGTGAAGAAGATGAGCCAAGTTATACAGAAGATGGGACTGGTGAGAACGTTGAAGGAGCCAAGGGTAAAAAGGGATCCACATGGCAGCGAATGAAATGGACAGATAGAGTGGTTAGGCTTCTTATATCGGTGGTTGCTTGTGTGGATGATGATGGTACAGTTGAAGGTGGTGAAGGCCTTAAGAGGAAATCTGCAGTTTTACAGAAAAAGGGTAAGTGGAAGACTGTGTCAAAGATAATGATTGGTAAAGGTTGCCATGTGTCACCTCAGCAGTGCGAGGACAAGTTTAATGATTTGAACAAGAGGTATAAGAGGTTGAATGATATTCTTGGGAGGGGAACTAGTTGTAGAGTGGTGGAGAATCCTACTCTTATGGACTCAATGCCCCATCTCTCCGCCAAGGCGAAAGATGACGTTAGAAAGATTTTGAGTTCAAAACAGTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGTGGATACCTGGTTGTCATGATCTTGACCTCAAAGGTCATCCTTTGCCTCCCGGGAGATGCTCAACAGACAATAATGTTTCTGAGGAAGAAGGGGCTGAAGAACACCATGACACTGAGGATGATGAGTTAGATGACGAAGATAATAATGCTGATGGAATTGATAGGGATCGGATGGGTAGAATGGGTGACAGGATGAGATCTAGTGAAGAAGATGACCATTTCTGGCAACATGTTTCTCTGGATACTTTTGAAGTTGAAATGGCTGAGGTTCTTCAAGACCCAACAAAGTCTCTATGGGAGCGAAAAGAGTGGATCAAGAAACAGAAGTGGCAACTCCAACAGCAAAGAGTCAGCTGTGAGGCTGAAGCTTTGGAGCTTGAGAAGCAGAGGTATAAATGGCTAAGATACCGTAGCAAGAAAGACAGGGAACTGGAGAGGTTGAGGCTGGAGAATGAGAGAATGAAATTAGAGAATGAAAAAAGGGTACTGCAACTGAGGCAGAAGGAACTGGAAATAGATGTGAGGCTGTCAGAAGCTTCTTTAGAACCTTCTGTTGGTATTGACAGATTGCTAGGAAGAGATCTTGACTTGGGGAGGCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

452

Amino Acids

51.22

Weight (kDa)

5.91

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 121 - 211 4e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AccII CGCG 1 cut(s) 71
AciI CCGC 3 cut(s) 69, 239, 669
AclI AACGTT 1 cut(s) 321
AclWI GGATC 4 cut(s) 342, 355, 927, 1073
AcuI CTGAAG 2 cut(s) 870, 1137
AfaI GTAC 3 cut(s) 211, 430, 1239
AfiI CCNNNNNNNGG 2 cut(s) 47, 1307
AflII CTTAAG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 982
AgsI TTSAA 9 cut(s) 65, 326, 437, 571, 592, 708, 1004, 1010, 1028
AhlI ACTAGT 1 cut(s) 614
AjnI CCWGG 2 cut(s) 84, 760
AjuI GAANNNNNNNTTGG 4 cut(s) 196, 228, 1290, 1322
AluBI AGCT 4 cut(s) 1107, 1121, 1129, 1289
AluI AGCT 4 cut(s) 1107, 1121, 1129, 1289
Alw26I GTCTC 1 cut(s) 1047
AlwI GGATC 4 cut(s) 342, 355, 927, 1073
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 1 cut(s) 358
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 3 cut(s) 108, 804, 805
AsuHPI GGTGA 6 cut(s) 155, 199, 326, 455, 528, 950
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 1 cut(s) 38
BamHI GGATCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 500
BbvCI CCTCAGC 2 cut(s) 540, 1017
BbvI GCAGC 1 cut(s) 370
BccI CCATC 6 cut(s) 174, 299, 419, 669, 899, 919
BciT130I CCWGG 2 cut(s) 86, 762
BciVI GTATCC 2 cut(s) 750, 988
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 3 cut(s) 108, 804, 805
BcoDI GTCTC 1 cut(s) 1047
BcuI ACTAGT 1 cut(s) 614
BfaI CTAG 5 cut(s) 56, 78, 615, 954, 1325
BfmI CTRYAG 2 cut(s) 171, 465
BfrI CTTAAG 1 cut(s) 452
BfuI GTATCC 2 cut(s) 750, 988
BglII AGATCT 2 cut(s) 950, 1333
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
Bme1390I CCNGG 5 cut(s) 86, 108, 762, 804, 805
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 331, 349
BmrFI CCNGG 5 cut(s) 86, 108, 762, 804, 805
BmsI GCATC 1 cut(s) 800
BpiI GAAGAC 1 cut(s) 500
BpmI CTGGAG 2 cut(s) 1205, 1220
Bpu10I CCTNAGC 2 cut(s) 540, 1017
BpuEI CTTGAG 1 cut(s) 1151
BpuMI CCSGG 3 cut(s) 108, 804, 805
BsaBI GATNNNNATC 2 cut(s) 165, 918
BsaJI CCNNGG 3 cut(s) 333, 672, 803
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 1307
Bse1I ACTGG 3 cut(s) 316, 1188, 1266
Bse3DI GCAATG 1 cut(s) 265
Bse8I GATNNNNATC 2 cut(s) 165, 918
BseBI CCWGG 2 cut(s) 86, 762
BseDI CCNNGG 3 cut(s) 333, 672, 803
BseGI GGATG 7 cut(s) 10, 166, 424, 790, 877, 930, 951
BseJI GATNNNNATC 2 cut(s) 165, 918
BseLI CCNNNNNNNGG 2 cut(s) 47, 1307
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 5 cut(s) 554, 825, 858, 1008, 1238
BseNI ACTGG 3 cut(s) 316, 1188, 1266
BseXI GCAGC 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 803
BsiSI CCGG 2 cut(s) 107, 804
BslFI GGGAC 2 cut(s) 64, 322
BslI CCNNNNNNNGG 2 cut(s) 47, 1307
BsmAI GTCTC 1 cut(s) 1047
BsmFI GGGAC 2 cut(s) 64, 322
BsnI GGCC 1 cut(s) 450
BsoBI CYCGRG 1 cut(s) 803
Bsp143I GATC 7 cut(s) 160, 347, 772, 919, 950, 1065, 1333
BspACI CCGC 3 cut(s) 69, 239, 669
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 5 cut(s) 553, 826, 859, 1009, 1239
BspFNI CGCG 1 cut(s) 71
BspHI TCATGA 1 cut(s) 769
BspLI GGNNCC 2 cut(s) 331, 349
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 4 cut(s) 342, 355, 927, 1073
BspTI CTTAAG 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 3 cut(s) 316, 1188, 1266
BssECI CCNNGG 3 cut(s) 333, 672, 803
BssMI GATC 7 cut(s) 160, 347, 772, 919, 950, 1065, 1333
BssT1I CCWWGG 2 cut(s) 333, 672
Bst2UI CCWGG 2 cut(s) 86, 762
Bst4CI ACNGT 5 cut(s) 433, 499, 714, 753, 1163
Bst6I CTCTTC 1 cut(s) 1324
BstAFI CTTAAG 1 cut(s) 452
BstDEI CTNAG 6 cut(s) 540, 834, 867, 1017, 1154, 1247
BstF5I GGATG 7 cut(s) 10, 166, 424, 790, 877, 930, 951
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 7 cut(s) 163, 350, 775, 922, 953, 1068, 1336
BstMAI GTCTC 1 cut(s) 1047
BstMBI GATC 7 cut(s) 160, 347, 772, 919, 950, 1065, 1333
BstMWI GCNNNNNNNGC 2 cut(s) 1135, 1249
BstNI CCWGG 2 cut(s) 86, 762
BstNSI RCATGY 1 cut(s) 986
BstSCI CCNGG 5 cut(s) 84, 106, 760, 802, 803
BstSFI CTRYAG 2 cut(s) 171, 465
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 370
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 3 cut(s) 347, 950, 1333
BstYI RGATCY 3 cut(s) 347, 950, 1333
BsuI GTATCC 2 cut(s) 750, 988
BsuRI GGCC 1 cut(s) 450
BtsCI GGATG 7 cut(s) 10, 166, 424, 790, 877, 930, 951
BtsI GCAGTG 1 cut(s) 551
BtsIMutI CAGTG 3 cut(s) 551, 758, 864
CciI TCATGA 1 cut(s) 769
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 803
CsiI ACCWGGT 1 cut(s) 760
Csp6I GTAC 3 cut(s) 210, 429, 1238
CviAII CATG 6 cut(s) 131, 354, 530, 770, 860, 983
CviQI GTAC 3 cut(s) 210, 429, 1238
DdeI CTNAG 6 cut(s) 540, 834, 867, 1017, 1154, 1247
DpnI GATC 7 cut(s) 162, 349, 774, 921, 952, 1067, 1335
DpnII GATC 7 cut(s) 160, 347, 772, 919, 950, 1065, 1333
Eam1104I CTCTTC 1 cut(s) 1324
EarI CTCTTC 1 cut(s) 1324
EciI GGCGGA 1 cut(s) 658
Eco130I CCWWGG 2 cut(s) 333, 672
Eco147I AGGCCT 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 870, 1137
Eco88I CYCGRG 1 cut(s) 803
EcoRII CCWGG 2 cut(s) 84, 760
EcoT14I CCWWGG 2 cut(s) 333, 672
ErhI CCWWGG 2 cut(s) 333, 672
FaeI CATG 6 cut(s) 134, 357, 533, 773, 863, 986
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FaqI GGGAC 2 cut(s) 64, 322
FatI CATG 6 cut(s) 130, 353, 529, 769, 859, 982
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 7 cut(s) 17, 153, 431, 777, 884, 937, 958
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 5 cut(s) 56, 78, 615, 954, 1325
GluI GCNGC 1 cut(s) 359
GsuI CTGGAG 2 cut(s) 1205, 1220
HaeIII GGCC 1 cut(s) 450
HapII CCGG 2 cut(s) 107, 804
Hin1II CATG 6 cut(s) 134, 357, 533, 773, 863, 986
HindIII AAGCTT 2 cut(s) 1119, 1287
HinfI GANTC 5 cut(s) 65, 73, 634, 650, 1101
HpaII CCGG 2 cut(s) 107, 804
HphI GGTGA 6 cut(s) 155, 199, 326, 455, 528, 950
Hpy188I TCNGA 3 cut(s) 835, 924, 1285
Hpy188III TCNNGA 6 cut(s) 770, 776, 992, 1028, 1069, 1337
HpyAV CCTTC 7 cut(s) 229, 320, 431, 440, 836, 1249, 1311
HpyCH4III ACNGT 5 cut(s) 433, 499, 714, 753, 1163
HpyCH4IV ACGT 2 cut(s) 321, 687
HpyCH4V TGCA 3 cut(s) 245, 467, 1243
HpyF10VI GCNNNNNNNGC 2 cut(s) 1135, 1249
HpyF3I CTNAG 6 cut(s) 540, 834, 867, 1017, 1154, 1247
HpySE526I ACGT 2 cut(s) 321, 687
Hsp92II CATG 6 cut(s) 134, 357, 533, 773, 863, 986
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 7 cut(s) 160, 347, 772, 919, 950, 1065, 1333
LmnI GCTCC 3 cut(s) 329, 1051, 1126
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 1 cut(s) 800
MabI ACCWGGT 1 cut(s) 760
MaeI CTAG 5 cut(s) 56, 78, 615, 954, 1325
MaeII ACGT 2 cut(s) 321, 687
MaeIII GTNAC 2 cut(s) 534, 938
MalI GATC 7 cut(s) 162, 349, 774, 921, 952, 1067, 1335
MboI GATC 7 cut(s) 160, 347, 772, 919, 950, 1065, 1333
MflI RGATCY 3 cut(s) 347, 950, 1333
MluCI AATT 3 cut(s) 268, 909, 1217
MlyI GAGTC 2 cut(s) 644, 1110
MmeI TCCRAC 2 cut(s) 133, 1114
MseI TTAA 3 cut(s) 252, 453, 561
MspA1I CMGCKG 1 cut(s) 1107
MspCI CTTAAG 1 cut(s) 452
MspI CCGG 2 cut(s) 107, 804
MspR9I CCNGG 5 cut(s) 86, 108, 762, 804, 805
MvaI CCWGG 2 cut(s) 86, 762
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 1135, 1249
NciI CCSGG 3 cut(s) 108, 804, 805
NdeII GATC 7 cut(s) 160, 347, 772, 919, 950, 1065, 1333
NlaIII CATG 6 cut(s) 134, 357, 533, 773, 863, 986
NlaIV GGNNCC 2 cut(s) 331, 349
NmuCI GTSAC 2 cut(s) 534, 938
NspI RCATGY 1 cut(s) 986
PagI TCATGA 1 cut(s) 769
PceI AGGCCT 1 cut(s) 450
PciI ACATGT 1 cut(s) 982
PfeI GAWTC 3 cut(s) 65, 73, 634
PflFI GACNNNGTC 1 cut(s) 499
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 2 cut(s) 644, 1109
PpsI GAGTC 2 cut(s) 644, 1109
PscI ACATGT 1 cut(s) 982
PsiI TTATAA 1 cut(s) 723
Psp1406I AACGTT 1 cut(s) 321
Psp6I CCWGG 2 cut(s) 84, 760
PspGI CCWGG 2 cut(s) 84, 760
PspN4I GGNNCC 2 cut(s) 331, 349
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 469
PsuI RGATCY 3 cut(s) 347, 950, 1333
PsyI GACNNNGTC 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 1107
RsaI GTAC 3 cut(s) 211, 430, 1239
RsaNI GTAC 3 cut(s) 210, 429, 1238
SaqAI TTAA 3 cut(s) 252, 453, 561
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 7 cut(s) 160, 347, 772, 919, 950, 1065, 1333
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 644, 1110
ScrFI CCNGG 5 cut(s) 86, 108, 762, 804, 805
SexAI ACCWGGT 1 cut(s) 760
SfaNI GCATC 1 cut(s) 800
SfcI CTRYAG 2 cut(s) 171, 465
SinI GGWCC 1 cut(s) 38
SmaI CCCGGG 1 cut(s) 805
SmlI CTYRAG 2 cut(s) 452, 1130
SmoI CTYRAG 2 cut(s) 452, 1130
SpeI ACTAGT 1 cut(s) 614
Sse9I AATT 3 cut(s) 268, 909, 1217
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 3 cut(s) 69, 239, 669
SspMI CTAG 5 cut(s) 56, 78, 615, 954, 1325
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 5 cut(s) 84, 106, 760, 802, 803
StyI CCWWGG 2 cut(s) 333, 672
TaaI ACNGT 5 cut(s) 433, 499, 714, 753, 1163
TaiI ACGT 2 cut(s) 324, 690
TaqI TCGA 2 cut(s) 197, 215
TasI AATT 3 cut(s) 268, 909, 1217
TfiI GAWTC 3 cut(s) 65, 73, 634
Tru1I TTAA 3 cut(s) 252, 453, 561
Tru9I TTAA 3 cut(s) 252, 453, 561
TscAI CASTG 3 cut(s) 551, 758, 871
TseFI GTSAC 2 cut(s) 534, 938
TseI GCWGC 1 cut(s) 358
Tsp45I GTSAC 2 cut(s) 534, 938
TspDTI ATGAA 4 cut(s) 233, 380, 1229, 1242
TspMI CCCGGG 1 cut(s) 803
TspRI CASTG 3 cut(s) 551, 758, 871
Tth111I GACNNNGTC 1 cut(s) 499
Vha464I CTTAAG 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 38
XceI RCATGY 1 cut(s) 986
XmaI CCCGGG 1 cut(s) 803
XspI CTAG 5 cut(s) 56, 78, 615, 954, 1325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.