Prupe.4G244300_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014700
Physical Location & Seq
Forward (+)
16212855 .. 16215484
2630 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G244300.1

Sequence Viewer

Length: 1353 bp
ATGGATAGTTCAGGTTTGGGAGGTGGTTTTTTGTCTGGTCCCAGTGGGGGGATACTAGACCTTGAATCGTCCATTCCTAGACGCCAAGAGATACAATTGGGTCATCCGTTGTTCGCACATCATCAACATCACATGAATGTGATGAGTGGCGTTAAAGGTGATCATGATCCCATTGGGCTTGTGGAAGTGAAAGGGTCAATCCCAAAAGTTTGTTCGACTGTTGTCAAAGGGAAGGCAGTGGCACCTTTTAATGCCAATAATGGTTACAATTTGAGTGATGAAGACGAGCCAAGTTATACAGATGATGGTGGCGAGAACTTTGAAGGGGCCAAGGGCAAAAAGGGATCTCCATGGCAGCGAATGAAGTGGACTGATAATGTGGTTAGGCTTCTTATAGCTATTGTTGCTTGTGTGGGTGATGATGGTACGCTTGAAAGTGGCGAGGGGCTTAAGAGGAAATCTGGGATTTTACAGAAGAAGGGTAAGTGGAAGACTGTATCGAAAATAATGATTAGTAAAGGTTGTCATGTGTCTCCTCAGCAGTGTGAGGACAAGTTTAATGACTTGAACAAGAGGTACAAGAGGTTGAATGATATTCTTGGGAGGGGAACTAGTTGTAGAGTGGTGGAGAATCCTGCTCTTATGGACTCAATGCCCCACCTGTCTGCCAAGGCAAAGGATGACGTGAGAAAGATATTGAGCTCAAAACACTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGAGGATACCTGATTGCCATGATCTCGATCTCCAAGGTTATTCTTTGCCTCTTGGGAGGTGCTCAAAAGACAATAATGGATCCGATGAAGAAGAGGCTGAAGAACACCATGATACCGAGGATGATGAATTAGACAATGAAGATGATAACGATGCAGATAATGATAGGGAGAGGATGAGAAGAATGGGTGACAGGAAGAAGGCTAGTGAAGAGGATGGCCATTTCTGGCCACAATATGTTCTTCTGGATAGTTTTGAAGTTGAAATGGGTGAGATTTTTCAAGACCCAACAAAGTCATTATGGGAGCGAAGAGACTGGATCAAGAAACAGAAGTTGCAACTCGAAGAGCAAAGAGTCGGCTTCCAGGCCGAAGCTTTGGAGCTTGAAAAGCAGAGATATAAATGGCTAAGATACTGTAGCAAGAAAGACAGGGAACTGGAGAGGTTGAGGCTGGAGAACGAGAGAATGAAGCTAGAGAATGAGAGAAAGGTACTGCAACTGAGACAGAAGGAACTGGAAATAGATTTGAGGAGGTCAGAATCTTCCTTAGAGCCTTCATCTCTTGGGCTAGGAAGAGATCAGATTGATTTGGGCAGGCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

451

Amino Acids

51.36

Weight (kDa)

5.83

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
AccB1I GGYRCC 1 cut(s) 241
AclWI GGATC 5 cut(s) 161, 352, 822, 835, 1073
AcoI YGGCCR 2 cut(s) 964, 974
AcuI CTGAAG 1 cut(s) 867
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 3 cut(s) 427, 578, 1239
AfiI CCNNNNNNNGG 2 cut(s) 47, 48
AflII CTTAAG 1 cut(s) 449
AgsI TTSAA 9 cut(s) 65, 323, 434, 568, 589, 1004, 1010, 1028, 1133
AhlI ACTAGT 1 cut(s) 611
AjiI CACGTC 1 cut(s) 685
AjnI CCWGG 1 cut(s) 1110
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AluBI AGCT 5 cut(s) 398, 702, 1121, 1129, 1219
AluI AGCT 5 cut(s) 398, 702, 1121, 1129, 1219
Alw21I GWGCWC 2 cut(s) 704, 812
Alw26I GTCTC 3 cut(s) 537, 1053, 1243
AlwI GGATC 5 cut(s) 161, 352, 822, 835, 1073
AoxI GGCC 4 cut(s) 327, 964, 974, 1113
ApeKI GCWGC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 38, 327
AsuHPI GGTGA 4 cut(s) 170, 428, 947, 1028
AvaII GGWCC 1 cut(s) 38
BalI TGGCCA 2 cut(s) 966, 976
BamHI GGATCC 1 cut(s) 827
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 704
BbsI GAAGAC 2 cut(s) 288, 497
Bbv12I GWGCWC 2 cut(s) 704, 812
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 1 cut(s) 367
BccI CCATC 3 cut(s) 299, 416, 956
BciT130I CCWGG 1 cut(s) 1112
BciVI GTATCC 2 cut(s) 45, 747
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 3 cut(s) 537, 1053, 1243
BcuI ACTAGT 1 cut(s) 611
BfaI CTAG 6 cut(s) 56, 78, 612, 951, 1220, 1316
BfmI CTRYAG 1 cut(s) 1162
BfrI CTTAAG 1 cut(s) 449
BfuI GTATCC 2 cut(s) 45, 747
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 1112
Bme18I GGWCC 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 685
BmgT120I GGNCC 2 cut(s) 38, 327
BmiI GGNNCC 4 cut(s) 40, 243, 328, 829
BmrFI CCNGG 1 cut(s) 1112
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 889
BmuI ACTGGG 1 cut(s) 36
BoxI GACNNNNGTC 1 cut(s) 221
BpiI GAAGAC 2 cut(s) 288, 497
BpmI CTGGAG 2 cut(s) 1205, 1220
Bpu10I CCTNAGC 1 cut(s) 537
BsaBI GATNNNNATC 2 cut(s) 165, 774
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 5 cut(s) 330, 350, 669, 781, 864
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 48
Bse1I ACTGG 4 cut(s) 42, 1067, 1188, 1266
Bse8I GATNNNNATC 2 cut(s) 165, 774
BseBI CCWGG 1 cut(s) 1112
BseDI CCNNGG 5 cut(s) 330, 350, 669, 781, 864
BseGI GGATG 5 cut(s) 103, 685, 874, 927, 967
BseJI GATNNNNATC 2 cut(s) 165, 774
BseLI CCNNNNNNNGG 2 cut(s) 47, 48
BseMII CTCAG 2 cut(s) 551, 1238
BseNI ACTGG 4 cut(s) 42, 1067, 1188, 1266
BseRI GAGGAG 2 cut(s) 525, 1291
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 4 cut(s) 329, 966, 976, 1115
BshNI GGYRCC 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 704, 812
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 47, 48
BsmAI GTCTC 3 cut(s) 537, 1053, 1243
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 4 cut(s) 329, 966, 976, 1115
Bsp1286I GDGCHC 2 cut(s) 704, 812
Bsp143I GATC 8 cut(s) 160, 166, 344, 769, 775, 827, 1065, 1324
Bsp19I CCATGG 1 cut(s) 350
BspANI GGCC 4 cut(s) 329, 966, 976, 1115
BspCNI CTCAG 2 cut(s) 550, 1239
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 4 cut(s) 40, 243, 328, 829
BspPI GGATC 5 cut(s) 161, 352, 822, 835, 1073
BspQI GCTCTTC 1 cut(s) 1086
BspT107I GGYRCC 1 cut(s) 241
BspTI CTTAAG 1 cut(s) 449
BsrI ACTGG 4 cut(s) 42, 1067, 1188, 1266
BssECI CCNNGG 5 cut(s) 330, 350, 669, 781, 864
BssMI GATC 8 cut(s) 160, 166, 344, 769, 775, 827, 1065, 1324
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 4 cut(s) 330, 350, 669, 781
Bst2UI CCWGG 1 cut(s) 1112
Bst4CI ACNGT 3 cut(s) 220, 496, 1163
Bst6I CTCTTC 5 cut(s) 834, 951, 1051, 1086, 1315
BstACI GRCGYC 1 cut(s) 82
BstAFI CTTAAG 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 1343
BstDEI CTNAG 4 cut(s) 537, 1154, 1247, 1294
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 5 cut(s) 103, 685, 874, 927, 967
BstKTI GATC 8 cut(s) 163, 169, 347, 772, 778, 830, 1068, 1327
BstMAI GTCTC 3 cut(s) 537, 1053, 1243
BstMBI GATC 8 cut(s) 160, 166, 344, 769, 775, 827, 1065, 1324
BstMWI GCNNNNNNNGC 2 cut(s) 404, 1135
BstNI CCWGG 1 cut(s) 1112
BstPAI GACNNNNGTC 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 1110
BstSFI CTRYAG 1 cut(s) 1162
BstV1I GCAGC 1 cut(s) 367
BstV2I GAAGAC 2 cut(s) 288, 497
BstX2I RGATCY 2 cut(s) 344, 827
BstYI RGATCY 2 cut(s) 344, 827
BsuI GTATCC 2 cut(s) 45, 747
BsuRI GGCC 4 cut(s) 329, 966, 976, 1115
BtgI CCRYGG 1 cut(s) 350
BtrI CACGTC 1 cut(s) 685
BtsCI GGATG 5 cut(s) 103, 685, 874, 927, 967
BtsI GCAGTG 2 cut(s) 243, 548
BtsIMutI CAGTG 3 cut(s) 49, 243, 548
Cac8I GCNNGC 1 cut(s) 1343
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 38, 327
CseI GACGC 1 cut(s) 90
Csp6I GTAC 3 cut(s) 426, 577, 1238
CviAII CATG 6 cut(s) 133, 164, 351, 527, 767, 857
CviQI GTAC 3 cut(s) 426, 577, 1238
DdeI CTNAG 4 cut(s) 537, 1154, 1247, 1294
DpnI GATC 8 cut(s) 162, 168, 346, 771, 777, 829, 1067, 1326
DpnII GATC 8 cut(s) 160, 166, 344, 769, 775, 827, 1065, 1324
EaeI YGGCCR 2 cut(s) 964, 974
Eam1104I CTCTTC 5 cut(s) 834, 951, 1051, 1086, 1315
EarI CTCTTC 5 cut(s) 834, 951, 1051, 1086, 1315
Ecl136II GAGCTC 1 cut(s) 702
Eco130I CCWWGG 4 cut(s) 330, 350, 669, 781
Eco24I GRGCYC 1 cut(s) 704
Eco47I GGWCC 1 cut(s) 38
Eco53kI GAGCTC 1 cut(s) 702
Eco57I CTGAAG 1 cut(s) 867
EcoICRI GAGCTC 1 cut(s) 702
EcoRII CCWGG 1 cut(s) 1110
EcoT14I CCWWGG 4 cut(s) 330, 350, 669, 781
EcoT38I GRGCYC 1 cut(s) 704
ErhI CCWWGG 4 cut(s) 330, 350, 669, 781
FaeI CATG 6 cut(s) 136, 167, 354, 530, 770, 860
FaqI GGGAC 1 cut(s) 24
FatI CATG 6 cut(s) 132, 163, 350, 526, 766, 856
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 5 cut(s) 90, 692, 881, 934, 974
FriOI GRGCYC 1 cut(s) 704
Fsp4HI GCNGC 1 cut(s) 356
FspBI CTAG 6 cut(s) 56, 78, 612, 951, 1220, 1316
GluI GCNGC 1 cut(s) 356
GsuI CTGGAG 2 cut(s) 1205, 1220
HaeIII GGCC 4 cut(s) 329, 966, 976, 1115
HgaI GACGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 6 cut(s) 136, 167, 354, 530, 770, 860
HindIII AAGCTT 1 cut(s) 1119
HinfI GANTC 5 cut(s) 65, 631, 647, 1101, 1286
HphI GGTGA 4 cut(s) 170, 428, 947, 1028
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 3 cut(s) 832, 1285, 1329
Hpy188III TCNNGA 5 cut(s) 164, 773, 992, 1028, 1069
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 6 cut(s) 226, 317, 472, 940, 1249, 1311
HpyCH4III ACNGT 3 cut(s) 220, 496, 1163
HpyCH4IV ACGT 1 cut(s) 684
HpyCH4V TGCA 3 cut(s) 902, 1084, 1243
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 1135
HpyF3I CTNAG 4 cut(s) 537, 1154, 1247, 1294
HpySE526I ACGT 1 cut(s) 684
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 6 cut(s) 136, 167, 354, 530, 770, 860
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 8 cut(s) 160, 166, 344, 769, 775, 827, 1065, 1324
LguI GCTCTTC 1 cut(s) 1086
LmnI GCTCC 2 cut(s) 1051, 1126
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 889
MaeI CTAG 6 cut(s) 56, 78, 612, 951, 1220, 1316
MaeII ACGT 1 cut(s) 684
MaeIII GTNAC 2 cut(s) 263, 935
MalI GATC 8 cut(s) 162, 168, 346, 771, 777, 829, 1067, 1326
MboI GATC 8 cut(s) 160, 166, 344, 769, 775, 827, 1065, 1324
MfeI CAATTG 1 cut(s) 95
MflI RGATCY 2 cut(s) 344, 827
MhlI GDGCHC 2 cut(s) 704, 812
MlsI TGGCCA 2 cut(s) 966, 976
MluCI AATT 3 cut(s) 95, 268, 875
MluNI TGGCCA 2 cut(s) 966, 976
MlyI GAGTC 2 cut(s) 641, 1110
Mox20I TGGCCA 2 cut(s) 966, 976
MscI TGGCCA 2 cut(s) 966, 976
MseI TTAA 4 cut(s) 153, 249, 450, 558
MslI CAYNNNNRTG 2 cut(s) 135, 137
Msp20I TGGCCA 2 cut(s) 966, 976
MspCI CTTAAG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 1112
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 1 cut(s) 1112
MwoI GCNNNNNNNGC 2 cut(s) 404, 1135
NcoI CCATGG 1 cut(s) 350
NdeII GATC 8 cut(s) 160, 166, 344, 769, 775, 827, 1065, 1324
NlaIII CATG 6 cut(s) 136, 167, 354, 530, 770, 860
NlaIV GGNNCC 4 cut(s) 40, 243, 328, 829
NmuCI GTSAC 1 cut(s) 935
PagI TCATGA 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 1086
PfeI GAWTC 3 cut(s) 65, 631, 1286
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 2 cut(s) 641, 1109
PpsI GAGTC 2 cut(s) 641, 1109
PshAI GACNNNNGTC 1 cut(s) 221
PsiI TTATAA 1 cut(s) 720
Psp124BI GAGCTC 1 cut(s) 704
Psp6I CCWGG 1 cut(s) 1110
PspGI CCWGG 1 cut(s) 1110
PspN4I GGNNCC 4 cut(s) 40, 243, 328, 829
PspPI GGNCC 2 cut(s) 38, 327
PsrI GAACNNNNNNTAC 2 cut(s) 560, 592
PsuI RGATCY 2 cut(s) 344, 827
RsaI GTAC 3 cut(s) 427, 578, 1239
RsaNI GTAC 3 cut(s) 426, 577, 1238
RseI CAYNNNNRTG 2 cut(s) 135, 137
SacI GAGCTC 1 cut(s) 704
SapI GCTCTTC 1 cut(s) 1086
SaqAI TTAA 4 cut(s) 153, 249, 450, 558
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 8 cut(s) 160, 166, 344, 769, 775, 827, 1065, 1324
Sau96I GGNCC 2 cut(s) 38, 327
SchI GAGTC 2 cut(s) 641, 1110
ScrFI CCNGG 1 cut(s) 1112
SduI GDGCHC 2 cut(s) 704, 812
SfaNI GCATC 1 cut(s) 889
SfcI CTRYAG 1 cut(s) 1162
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 2 cut(s) 135, 137
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SpeI ACTAGT 1 cut(s) 611
Sse9I AATT 3 cut(s) 95, 268, 875
SspMI CTAG 6 cut(s) 56, 78, 612, 951, 1220, 1316
SstI GAGCTC 1 cut(s) 704
StyD4I CCNGG 1 cut(s) 1110
StyI CCWWGG 4 cut(s) 330, 350, 669, 781
TaaI ACNGT 3 cut(s) 220, 496, 1163
TaiI ACGT 1 cut(s) 687
TaqI TCGA 4 cut(s) 215, 500, 774, 1089
TasI AATT 3 cut(s) 95, 268, 875
TfiI GAWTC 3 cut(s) 65, 631, 1286
Tru1I TTAA 4 cut(s) 153, 249, 450, 558
Tru9I TTAA 4 cut(s) 153, 249, 450, 558
TscAI CASTG 3 cut(s) 49, 243, 548
TseFI GTSAC 1 cut(s) 935
TseI GCWGC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 935
TspDTI ATGAA 8 cut(s) 149, 294, 377, 849, 888, 900, 1229, 1293
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 3 cut(s) 49, 243, 548
Vha464I CTTAAG 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 6 cut(s) 56, 78, 612, 951, 1220, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.