Rw5G033160
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0014700
Physical Location & Seq
Reverse (-)
56238074 .. 56240536
2463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033160.1

Sequence Viewer

Length: 1377 bp
ATGGATGGTTCAGGTTTGGGAGGTGGATTTTTGTCTGGTCCAAGTGGGGGGACGCTAGACCTTGAATCGGCGATCCCTAGACACCAGGAGAAGCAGTTGGGTCTTCCGGGGTTGGCACATCATCAACATCATGGGATTGTGATGAGTGGTGTAGGGGTTGGGGTTGGGGTTGATCACCGTCCTGTAGGGCTTGCAGAGGTGAAAGGGTCGATACCAAGAGGTGCTTCGATGAATGTTGTAAAAGGGAAGGCCGTTGCACCTTTTAATACCAATAATGCTTACAATTTGAGTGAAGAAGATGAGCCAAGTTATACAGAAGATGGGAATGGTGAGAACGTTGAAGGAGCCAAGGGTAAAAAGGGATCCACATGGCAGCGAATGAAATGGACGGATAGAGTGGTTAGGCTTCTTATATCGGTGGTTGCTTGTGTGGATGATGATGGTACAGTTGAAGGTGGTGGTGAAGGCCTTAAGAGGAAATCTGCAGTTTTACAGAAAAAGGGTAAGTGGAAGACTGTGTCAAAGATAATGATTGGTAAAGGTTGCCATGTGTCACCTCAGCAGTGCGAGGACAAGTTTAATGATTTGAACAAGAGGTATAAGAGGTTGAATGATATTCTTGGGAGGGGAACTAGTTGTAGAGTGGTGGAGAATCCTACTCTTATGGACTCAATGCCCCATCTCTCCGCCAAGGCGAAAGATGACGTTAGAAAGATTTTGAGTTCAAAACAGTTGTTTTATAAAGAAATGTGTGCTTATCATAATGGACAGTGGATACCTGGTTGTCATGATCTTGACCTCAAAGGTCATCCTTTACCTCCCGGGAGATGCTCAACAGACAATAATGTTTCTGAGGAAGAAGGGGCTGAAGAACACCATGACACTGAGGATGATGAGTTAGATGACGAAGATAATAATGCTGATGGTATTGATAGGGATCGGATGGGTAGAATGGGTGACAGGACGAGATCTAGTGAAGAAGATGACCATTTCTGGCAACAGGTTTCTCTGGATAGTTTTGAAGTTGAAATGGCTGAGGTTCTTCAAGACCCAACAAAGTCTCTATGGGAGCGAAGAGAGTGGATCAAGAAACAGAAGTTGCAACTCCAACAGCAAAGAGTCAGCTGCGAGGCTGAAGCTTTGGAGCTTGAGAAGCAGAGGTATAAATGGCTAAGATACCGTAGCAAGAAAGACAGGGAACTGGAGAGGTTGAGGCTGGAGAATGAGAGAATGAGATTAGAGAATGACAAAAGGGTACTGCAACTGAGGCAGAAGGAACTGGAAATAGATGTGAGGCTGTCAGAAGCTTCTTTAGAACCTTCTGTTGGTATTGACAGATTGCTGGGAAGAGATCTTGACTTGGGGAGGCATCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

458

Amino Acids

51.6

Weight (kDa)

5.91

Isoelectric Point (pI)

40.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 126 - 217 5.7e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 741
AciI CCGC 1 cut(s) 687
AclI AACGTT 1 cut(s) 336
AclWI GGATC 5 cut(s) 67, 357, 370, 945, 1091
AcuI CTGAAG 2 cut(s) 888, 1155
AfaI GTAC 2 cut(s) 445, 1257
AfiI CCNNNNNNNGG 3 cut(s) 47, 67, 1325
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 9 cut(s) 65, 341, 452, 589, 610, 726, 1022, 1028, 1046
AhlI ACTAGT 1 cut(s) 632
AjnI CCWGG 2 cut(s) 84, 778
AjuI GAANNNNNNNTTGG 4 cut(s) 208, 240, 1308, 1340
AluBI AGCT 4 cut(s) 1125, 1139, 1147, 1307
AluI AGCT 4 cut(s) 1125, 1139, 1147, 1307
Alw26I GTCTC 1 cut(s) 1065
AlwI GGATC 5 cut(s) 67, 357, 370, 945, 1091
Ama87I CYCGRG 1 cut(s) 821
AoxI GGCC 2 cut(s) 249, 466
ApeKI GCWGC 2 cut(s) 373, 1125
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 3 cut(s) 108, 822, 823
AsuHPI GGTGA 6 cut(s) 167, 211, 341, 473, 546, 968
AvaI CYCGRG 1 cut(s) 821
AvaII GGWCC 1 cut(s) 38
BamHI GGATCC 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 95, 518
BbvCI CCTCAGC 2 cut(s) 558, 1035
BbvI GCAGC 2 cut(s) 385, 1112
BccI CCATC 5 cut(s) 314, 434, 687, 917, 937
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 2 cut(s) 86, 780
BciVI GTATCC 1 cut(s) 768
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 3 cut(s) 108, 822, 823
BcoDI GTCTC 1 cut(s) 1065
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 4 cut(s) 56, 78, 633, 972
BfmI CTRYAG 2 cut(s) 183, 483
BfrI CTTAAG 1 cut(s) 470
BfuI GTATCC 1 cut(s) 768
BglII AGATCT 2 cut(s) 968, 1351
BisI GCNGC 2 cut(s) 374, 1126
BlsI GCNGC 2 cut(s) 375, 1127
Bme1390I CCNGG 5 cut(s) 86, 108, 780, 822, 823
Bme18I GGWCC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 821
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 346, 364
BmrFI CCNGG 5 cut(s) 86, 108, 780, 822, 823
BmsI GCATC 1 cut(s) 818
BpiI GAAGAC 2 cut(s) 95, 518
BpmI CTGGAG 2 cut(s) 1223, 1238
Bpu10I CCTNAGC 2 cut(s) 558, 1035
BpuEI CTTGAG 1 cut(s) 1169
BpuMI CCSGG 3 cut(s) 108, 822, 823
BsaBI GATNNNNATC 1 cut(s) 936
BsaJI CCNNGG 4 cut(s) 107, 348, 690, 821
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 67, 1325
Bse1I ACTGG 2 cut(s) 1206, 1284
Bse8I GATNNNNATC 1 cut(s) 936
BseBI CCWGG 2 cut(s) 86, 780
BseDI CCNNGG 4 cut(s) 107, 348, 690, 821
BseGI GGATG 5 cut(s) 10, 439, 808, 895, 948
BseJI GATNNNNATC 1 cut(s) 936
BseLI CCNNNNNNNGG 3 cut(s) 47, 67, 1325
BseMII CTCAG 5 cut(s) 572, 843, 876, 1026, 1256
BseNI ACTGG 2 cut(s) 1206, 1284
BseXI GCAGC 2 cut(s) 385, 1112
BseYI CCCAGC 1 cut(s) 1342
BshFI GGCC 2 cut(s) 251, 468
BsiHKCI CYCGRG 1 cut(s) 821
BsiSI CCGG 2 cut(s) 107, 822
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 3 cut(s) 47, 67, 1325
BsmAI GTCTC 1 cut(s) 1065
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 2 cut(s) 251, 468
BsoBI CYCGRG 1 cut(s) 821
Bsp143I GATC 8 cut(s) 72, 172, 362, 790, 937, 968, 1083, 1351
BspACI CCGC 1 cut(s) 687
BspANI GGCC 2 cut(s) 251, 468
BspCNI CTCAG 5 cut(s) 571, 844, 877, 1027, 1257
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 2 cut(s) 346, 364
BspMAI CTGCAG 1 cut(s) 487
BspPI GGATC 5 cut(s) 67, 357, 370, 945, 1091
BspTI CTTAAG 1 cut(s) 470
BsrI ACTGG 2 cut(s) 1206, 1284
BssECI CCNNGG 4 cut(s) 107, 348, 690, 821
BssMI GATC 8 cut(s) 72, 172, 362, 790, 937, 968, 1083, 1351
BssT1I CCWWGG 2 cut(s) 348, 690
Bst2UI CCWGG 2 cut(s) 86, 780
Bst4CI ACNGT 6 cut(s) 179, 448, 517, 732, 771, 1181
Bst6I CTCTTC 2 cut(s) 1069, 1342
BstAFI CTTAAG 1 cut(s) 470
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 6 cut(s) 558, 852, 885, 1035, 1172, 1265
BstF5I GGATG 5 cut(s) 10, 439, 808, 895, 948
BstKTI GATC 8 cut(s) 75, 175, 365, 793, 940, 971, 1086, 1354
BstMAI GTCTC 1 cut(s) 1065
BstMBI GATC 8 cut(s) 72, 172, 362, 790, 937, 968, 1083, 1351
BstMWI GCNNNNNNNGC 2 cut(s) 1153, 1267
BstNI CCWGG 2 cut(s) 86, 780
BstSCI CCNGG 5 cut(s) 84, 106, 778, 820, 821
BstSFI CTRYAG 2 cut(s) 183, 483
BstV1I GCAGC 2 cut(s) 385, 1112
BstV2I GAAGAC 2 cut(s) 95, 518
BstX2I RGATCY 3 cut(s) 362, 968, 1351
BstYI RGATCY 3 cut(s) 362, 968, 1351
BsuI GTATCC 1 cut(s) 768
BsuRI GGCC 2 cut(s) 251, 468
BtsCI GGATG 5 cut(s) 10, 439, 808, 895, 948
BtsI GCAGTG 1 cut(s) 569
BtsIMutI CAGTG 3 cut(s) 569, 776, 882
Cac8I GCNNGC 1 cut(s) 192
CciI TCATGA 1 cut(s) 787
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 821
CseI GACGC 1 cut(s) 61
CsiI ACCWGGT 1 cut(s) 778
Csp6I GTAC 2 cut(s) 444, 1256
CviAII CATG 5 cut(s) 131, 369, 548, 788, 878
CviQI GTAC 2 cut(s) 444, 1256
DdeI CTNAG 6 cut(s) 558, 852, 885, 1035, 1172, 1265
DpnI GATC 8 cut(s) 74, 174, 364, 792, 939, 970, 1085, 1353
DpnII GATC 8 cut(s) 72, 172, 362, 790, 937, 968, 1083, 1351
Eam1104I CTCTTC 2 cut(s) 1069, 1342
EarI CTCTTC 2 cut(s) 1069, 1342
EciI GGCGGA 1 cut(s) 676
Eco130I CCWWGG 2 cut(s) 348, 690
Eco147I AGGCCT 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 888, 1155
Eco88I CYCGRG 1 cut(s) 821
EcoRII CCWGG 2 cut(s) 84, 778
EcoT14I CCWWGG 2 cut(s) 348, 690
ErhI CCWWGG 2 cut(s) 348, 690
FaeI CATG 5 cut(s) 134, 372, 551, 791, 881
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FaqI GGGAC 1 cut(s) 64
FatI CATG 5 cut(s) 130, 368, 547, 787, 877
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 374, 1126
FokI GGATG 5 cut(s) 17, 446, 795, 902, 955
Fsp4HI GCNGC 2 cut(s) 374, 1126
FspBI CTAG 4 cut(s) 56, 78, 633, 972
GluI GCNGC 2 cut(s) 374, 1126
GsaI CCCAGC 1 cut(s) 1346
GsuI CTGGAG 2 cut(s) 1223, 1238
HaeIII GGCC 2 cut(s) 251, 468
HapII CCGG 2 cut(s) 107, 822
HgaI GACGC 1 cut(s) 61
Hin1II CATG 5 cut(s) 134, 372, 551, 791, 881
HindIII AAGCTT 2 cut(s) 1137, 1305
HinfI GANTC 4 cut(s) 65, 652, 668, 1119
HpaII CCGG 2 cut(s) 107, 822
HphI GGTGA 6 cut(s) 167, 211, 341, 473, 546, 968
Hpy188I TCNGA 3 cut(s) 853, 942, 1303
Hpy188III TCNNGA 6 cut(s) 788, 794, 1010, 1046, 1087, 1355
HpyAV CCTTC 7 cut(s) 241, 335, 446, 458, 854, 1267, 1329
HpyCH4III ACNGT 6 cut(s) 179, 448, 517, 732, 771, 1181
HpyCH4IV ACGT 2 cut(s) 336, 705
HpyCH4V TGCA 5 cut(s) 194, 257, 485, 1102, 1261
HpyF10VI GCNNNNNNNGC 2 cut(s) 1153, 1267
HpyF3I CTNAG 6 cut(s) 558, 852, 885, 1035, 1172, 1265
HpySE526I ACGT 2 cut(s) 336, 705
Hsp92II CATG 5 cut(s) 134, 372, 551, 791, 881
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 8 cut(s) 72, 172, 362, 790, 937, 968, 1083, 1351
LmnI GCTCC 3 cut(s) 344, 1069, 1144
Lsp1109I GCAGC 2 cut(s) 385, 1112
LweI GCATC 1 cut(s) 818
MabI ACCWGGT 1 cut(s) 778
MaeI CTAG 4 cut(s) 56, 78, 633, 972
MaeII ACGT 2 cut(s) 336, 705
MaeIII GTNAC 2 cut(s) 552, 956
MalI GATC 8 cut(s) 74, 174, 364, 792, 939, 970, 1085, 1353
MboI GATC 8 cut(s) 72, 172, 362, 790, 937, 968, 1083, 1351
MflI RGATCY 3 cut(s) 362, 968, 1351
MluCI AATT 1 cut(s) 283
MlyI GAGTC 2 cut(s) 662, 1128
MmeI TCCRAC 1 cut(s) 1132
MseI TTAA 3 cut(s) 264, 471, 579
MspA1I CMGCKG 1 cut(s) 1125
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 2 cut(s) 107, 822
MspR9I CCNGG 5 cut(s) 86, 108, 780, 822, 823
MvaI CCWGG 2 cut(s) 86, 780
MwoI GCNNNNNNNGC 2 cut(s) 1153, 1267
NciI CCSGG 3 cut(s) 108, 822, 823
NdeII GATC 8 cut(s) 72, 172, 362, 790, 937, 968, 1083, 1351
NlaIII CATG 5 cut(s) 134, 372, 551, 791, 881
NlaIV GGNNCC 2 cut(s) 346, 364
NmuCI GTSAC 2 cut(s) 552, 956
PagI TCATGA 1 cut(s) 787
PceI AGGCCT 1 cut(s) 468
PfeI GAWTC 2 cut(s) 65, 652
PflFI GACNNNGTC 1 cut(s) 517
PkrI GCNGC 2 cut(s) 375, 1127
PleI GAGTC 2 cut(s) 662, 1127
PpsI GAGTC 2 cut(s) 662, 1127
PsiI TTATAA 1 cut(s) 741
Psp1406I AACGTT 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 84, 778
PspFI CCCAGC 1 cut(s) 1342
PspGI CCWGG 2 cut(s) 84, 778
PspN4I GGNNCC 2 cut(s) 346, 364
PspPI GGNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 487
PsuI RGATCY 3 cut(s) 362, 968, 1351
PsyI GACNNNGTC 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 1125
RsaI GTAC 2 cut(s) 445, 1257
RsaNI GTAC 2 cut(s) 444, 1256
SaqAI TTAA 3 cut(s) 264, 471, 579
SatI GCNGC 2 cut(s) 374, 1126
Sau3AI GATC 8 cut(s) 72, 172, 362, 790, 937, 968, 1083, 1351
Sau96I GGNCC 1 cut(s) 38
SchI GAGTC 2 cut(s) 662, 1128
ScrFI CCNGG 5 cut(s) 86, 108, 780, 822, 823
SexAI ACCWGGT 1 cut(s) 778
SfaNI GCATC 1 cut(s) 818
SfcI CTRYAG 2 cut(s) 183, 483
SinI GGWCC 1 cut(s) 38
SmaI CCCGGG 1 cut(s) 823
SmlI CTYRAG 2 cut(s) 470, 1148
SmoI CTYRAG 2 cut(s) 470, 1148
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 1 cut(s) 283
SseBI AGGCCT 1 cut(s) 468
SsiI CCGC 1 cut(s) 687
SspMI CTAG 4 cut(s) 56, 78, 633, 972
StuI AGGCCT 1 cut(s) 468
StyD4I CCNGG 5 cut(s) 84, 106, 778, 820, 821
StyI CCWWGG 2 cut(s) 348, 690
TaaI ACNGT 6 cut(s) 179, 448, 517, 732, 771, 1181
TaiI ACGT 2 cut(s) 339, 708
TaqI TCGA 2 cut(s) 209, 227
TasI AATT 1 cut(s) 283
TfiI GAWTC 2 cut(s) 65, 652
Tru1I TTAA 3 cut(s) 264, 471, 579
Tru9I TTAA 3 cut(s) 264, 471, 579
TscAI CASTG 3 cut(s) 569, 776, 889
TseFI GTSAC 2 cut(s) 552, 956
TseI GCWGC 2 cut(s) 373, 1125
Tsp45I GTSAC 2 cut(s) 552, 956
TspDTI ATGAA 2 cut(s) 245, 395
TspGWI ACGGA 1 cut(s) 404
TspMI CCCGGG 1 cut(s) 821
TspRI CASTG 3 cut(s) 569, 776, 889
Tth111I GACNNNGTC 1 cut(s) 517
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 38
XmaI CCCGGG 1 cut(s) 821
XspI CTAG 4 cut(s) 56, 78, 633, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.