Rmu_sc0032608.1_g000002
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032608.1
OG0014700
Physical Location & Seq
Reverse (-)
4905 .. 8934
4030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032608.1_g000002.1.cds

Sequence Viewer

Length: 1614 bp
atgctgggcctttatggtctctcaagtgccagttataactcggatcatggttctccggaattgtcggtgcaacagactggtgggatctttccagtgaaggctgtaacccttgttccttcaaactcaaactcttcaaaactactcaggcgccgaatcttcatgctcgatctccacaagatttgggtttgttggtctgttttcaaattgtcacgggcttttgtacccgaaaagcagcattgtatgactggtctgatcggtttgggaggtggatttttgtctggtccaagtggggggacgctagaccttgaatcggcaatccctagacaccaggagaagcagttgggtcttccggggttggcacatcatcaacatcatgggattgtgatgagtggtgttggggttggggttgatcaccgtcctgtagggcttgcagaggtgaaagggtcgataccaagaggtgcttcgatgaatgttgtaaaagggaaggccgttgcaccttttaataccaataatgcttacaatttgagtgaagaagatgagccaagttatacagaagatgggaatggtgagaacgttgaaggagccaagggtaaaaagggatccacatggcagcgaatgaaatggacggatagagtggttaggcttcttatatcggtggttgcttgtgtggatgatgatggtacagttgaaggtggtggtgaaggccttaagaggaaatctgcagttttacagaaaaagggtaagtggaagactgtgtcaaagataatgattggtaaaggttgccatgtgtcacctcagcagtgcgaggacaagtttaatgatttgaacaagaggtataagaggttgaatgatattcttgggaggggaactagttgtagagtggtggagaatcctactcttatggactcaatgccccatctctccgccaaggcgaaagatgacgttagaaagattttgagttcaaaacagttgttttataaagaaatgtgtgcttatcataatggacagtggatacctggttgtcatgatcttgacctcaaaggtcatcctttacctcccgggagatgctcaacagacaataatgtttctgaggaagaaggggctgaagaacaccatgacactgaggatgatgagttagatgacgaagataataatgctgatggtattgatagggatcggatgggtagaatgggtgacaggacaagatctagtgaagaagatgaccatttctggcaacaggtttctctggatagttttgaagttgaaatggctgaggttcttcaagacccaacaaagtctctatgggagcgaagagagtggatcaagaaacagaagttgcaactccaacagcaaagagtcagctgcgaggctgaagctttggagcttgagaagcagaggtataaatggctaagataccgtagcaagaaagacagggaactggagaggttgaggctggagaatgagagaatgagattagagaatgacaaaagggtactgcaactgaggcagaaggaactggaaatagatgtgaggctgtcagaagcttctttagaaccttctgttggtattgacagattgctaggaagagatcttgacttggggaggcatcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

537

Amino Acids

60.52

Weight (kDa)

6.55

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014700)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g29090
malus_domestica MD03G1179000.v1.1 MD11G1198200.v1.1
prunus_persica Prupe.4G244300_v2.0.a1
pyrus_communis pycom11g17160
rosa_chinensis RchiOBHm_Chr5g0051441
rosa_laevigata RLG00000034876
rosa_multiflora Rmu_sc0000875.1_g000001 Rmu_sc0022189.1_g000004 Rmu_sc0032608.1_g000002
rosa_roxburghii Rroxscaffold_1G00027050
rosa_rugosa Rorug05G0279700
rosa_samantha Rh5AG350700 Rh5BG362800 Rh5CG387500 Rh5DG377300
rosa_wichuraiana Rw5G033160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 36, 978
AccB1I GGYRCC 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 1 cut(s) 924
AclI AACGTT 1 cut(s) 573
AclWI GGATC 6 cut(s) 51, 92, 594, 607, 1182, 1328
AcuI CTGAAG 2 cut(s) 1125, 1392
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 3 cut(s) 222, 682, 1494
AfiI CCNNNNNNNGG 3 cut(s) 290, 310, 1562
AflII CTTAAG 1 cut(s) 707
AhlI ACTAGT 1 cut(s) 869
AjnI CCWGG 2 cut(s) 327, 1015
AjuI GAANNNNNNNTTGG 4 cut(s) 445, 477, 1545, 1577
AluBI AGCT 4 cut(s) 1362, 1376, 1384, 1544
AluI AGCT 4 cut(s) 1362, 1376, 1384, 1544
Alw26I GTCTC 2 cut(s) 23, 1302
AlwI GGATC 6 cut(s) 51, 92, 594, 607, 1182, 1328
Ama87I CYCGRG 1 cut(s) 1058
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 3 cut(s) 7, 486, 703
ApeKI GCWGC 3 cut(s) 232, 610, 1362
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 2 cut(s) 7, 281
AsuC2I CCSGG 3 cut(s) 351, 1059, 1060
AsuHPI GGTGA 6 cut(s) 404, 448, 578, 710, 783, 1205
AvaI CYCGRG 1 cut(s) 1058
AvaII GGWCC 1 cut(s) 281
BamHI GGATCC 1 cut(s) 599
BanI GGYRCC 1 cut(s) 147
BbsI GAAGAC 2 cut(s) 338, 755
BbvCI CCTCAGC 2 cut(s) 795, 1272
BbvI GCAGC 3 cut(s) 244, 622, 1349
BccI CCATC 5 cut(s) 551, 671, 924, 1154, 1174
BceAI ACGGC 1 cut(s) 473
BciT130I CCWGG 2 cut(s) 329, 1017
BciVI GTATCC 1 cut(s) 1005
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 3 cut(s) 351, 1059, 1060
BcoDI GTCTC 2 cut(s) 23, 1302
BcuI ACTAGT 1 cut(s) 869
BfaI CTAG 5 cut(s) 299, 321, 870, 1209, 1580
BfmI CTRYAG 2 cut(s) 420, 720
BfoI RGCGCY 1 cut(s) 151
BfrI CTTAAG 1 cut(s) 707
BfuI GTATCC 1 cut(s) 1005
BglII AGATCT 2 cut(s) 1205, 1588
BisI GCNGC 3 cut(s) 233, 611, 1363
BlsI GCNGC 3 cut(s) 234, 612, 1364
Bme1390I CCNGG 5 cut(s) 329, 351, 1017, 1059, 1060
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 1 cut(s) 1058
BmgT120I GGNCC 2 cut(s) 7, 281
BmiI GGNNCC 3 cut(s) 149, 583, 601
BmrFI CCNGG 5 cut(s) 329, 351, 1017, 1059, 1060
BmsI GCATC 1 cut(s) 1055
BpiI GAAGAC 2 cut(s) 338, 755
BpmI CTGGAG 2 cut(s) 1460, 1475
Bpu10I CCTNAGC 2 cut(s) 795, 1272
BpuEI CTTGAG 2 cut(s) 7, 1406
BpuMI CCSGG 3 cut(s) 351, 1059, 1060
BsaBI GATNNNNATC 1 cut(s) 1173
BsaHI GRCGYC 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 4 cut(s) 350, 585, 927, 1058
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 310, 1562
Bse1I ACTGG 6 cut(s) 30, 82, 92, 250, 1443, 1521
Bse8I GATNNNNATC 1 cut(s) 1173
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 2 cut(s) 329, 1017
BseDI CCNNGG 4 cut(s) 350, 585, 927, 1058
BseGI GGATG 4 cut(s) 676, 1045, 1132, 1185
BseJI GATNNNNATC 1 cut(s) 1173
BseLI CCNNNNNNNGG 3 cut(s) 290, 310, 1562
BseMII CTCAG 6 cut(s) 157, 809, 1080, 1113, 1263, 1493
BseNI ACTGG 6 cut(s) 30, 82, 92, 250, 1443, 1521
BseXI GCAGC 3 cut(s) 244, 622, 1349
BseYI CCCAGC 1 cut(s) 4
BshFI GGCC 3 cut(s) 9, 488, 705
BshNI GGYRCC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 1058
BsiSI CCGG 3 cut(s) 56, 350, 1059
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 3 cut(s) 290, 310, 1562
BsmAI GTCTC 2 cut(s) 23, 1302
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 3 cut(s) 9, 488, 705
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 1058
Bsp13I TCCGGA 1 cut(s) 55
BspACI CCGC 1 cut(s) 924
BspANI GGCC 3 cut(s) 9, 488, 705
BspCNI CTCAG 6 cut(s) 156, 808, 1081, 1114, 1264, 1494
BspEI TCCGGA 1 cut(s) 55
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 3 cut(s) 149, 583, 601
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 6 cut(s) 51, 92, 594, 607, 1182, 1328
BspT107I GGYRCC 1 cut(s) 147
BspTI CTTAAG 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 23
BsrI ACTGG 6 cut(s) 30, 82, 92, 250, 1443, 1521
BssECI CCNNGG 4 cut(s) 350, 585, 927, 1058
BssNI GRCGYC 1 cut(s) 148
BssT1I CCWWGG 2 cut(s) 585, 927
Bst2UI CCWGG 2 cut(s) 329, 1017
Bst4CI ACNGT 6 cut(s) 416, 685, 754, 969, 1008, 1418
Bst6I CTCTTC 3 cut(s) 136, 1306, 1579
BstACI GRCGYC 1 cut(s) 148
BstAFI CTTAAG 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 7 cut(s) 143, 795, 1089, 1122, 1272, 1409, 1502
BstF5I GGATG 4 cut(s) 676, 1045, 1132, 1185
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 23, 1302
BstMWI GCNNNNNNNGC 2 cut(s) 1390, 1504
BstNI CCWGG 2 cut(s) 329, 1017
BstSCI CCNGG 5 cut(s) 327, 349, 1015, 1057, 1058
BstSFI CTRYAG 2 cut(s) 420, 720
BstV1I GCAGC 3 cut(s) 244, 622, 1349
BstV2I GAAGAC 2 cut(s) 338, 755
BstX2I RGATCY 4 cut(s) 84, 599, 1205, 1588
BstYI RGATCY 4 cut(s) 84, 599, 1205, 1588
BsuI GTATCC 1 cut(s) 1005
BsuRI GGCC 3 cut(s) 9, 488, 705
BtsCI GGATG 4 cut(s) 676, 1045, 1132, 1185
BtsI GCAGTG 1 cut(s) 806
BtsIMutI CAGTG 4 cut(s) 99, 806, 1013, 1119
Cac8I GCNNGC 1 cut(s) 429
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 7, 281
Cfr9I CCCGGG 1 cut(s) 1058
CseI GACGC 1 cut(s) 304
CsiI ACCWGGT 1 cut(s) 1015
Csp6I GTAC 3 cut(s) 221, 681, 1493
CspCI CAANNNNNGTGG 2 cut(s) 161, 196
CviAII CATG 7 cut(s) 47, 160, 374, 606, 785, 1025, 1115
CviQI GTAC 3 cut(s) 221, 681, 1493
DdeI CTNAG 7 cut(s) 143, 795, 1089, 1122, 1272, 1409, 1502
DinI GGCGCC 1 cut(s) 149
Eam1104I CTCTTC 3 cut(s) 136, 1306, 1579
EarI CTCTTC 3 cut(s) 136, 1306, 1579
EciI GGCGGA 1 cut(s) 913
Eco130I CCWWGG 2 cut(s) 585, 927
Eco147I AGGCCT 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 2 cut(s) 1125, 1392
Eco88I CYCGRG 1 cut(s) 1058
EcoRII CCWGG 2 cut(s) 327, 1015
EcoT14I CCWWGG 2 cut(s) 585, 927
EgeI GGCGCC 1 cut(s) 149
EheI GGCGCC 1 cut(s) 149
ErhI CCWWGG 2 cut(s) 585, 927
FaeI CATG 7 cut(s) 50, 163, 377, 609, 788, 1028, 1118
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 1 cut(s) 307
FatI CATG 7 cut(s) 46, 159, 373, 605, 784, 1024, 1114
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 233, 611, 1363
FokI GGATG 4 cut(s) 683, 1032, 1139, 1192
Fsp4HI GCNGC 3 cut(s) 233, 611, 1363
FspBI CTAG 5 cut(s) 299, 321, 870, 1209, 1580
GlaI GCGC 1 cut(s) 149
GluI GCNGC 3 cut(s) 233, 611, 1363
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 2 cut(s) 1460, 1475
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 3 cut(s) 9, 488, 705
HapII CCGG 3 cut(s) 56, 350, 1059
HgaI GACGC 1 cut(s) 304
HhaI GCGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 7 cut(s) 50, 163, 377, 609, 788, 1028, 1118
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HindIII AAGCTT 2 cut(s) 1374, 1542
HinfI GANTC 5 cut(s) 153, 308, 889, 905, 1356
HpaII CCGG 3 cut(s) 56, 350, 1059
HphI GGTGA 6 cut(s) 404, 448, 578, 710, 783, 1205
Hpy188I TCNGA 5 cut(s) 43, 252, 1090, 1179, 1540
Hpy188III TCNNGA 7 cut(s) 56, 1025, 1031, 1247, 1283, 1324, 1592
HpyAV CCTTC 9 cut(s) 91, 126, 478, 572, 683, 695, 1091, 1504, 1566
HpyCH4III ACNGT 6 cut(s) 416, 685, 754, 969, 1008, 1418
HpyCH4IV ACGT 2 cut(s) 573, 942
HpyCH4V TGCA 6 cut(s) 70, 431, 494, 722, 1339, 1498
HpyF10VI GCNNNNNNNGC 2 cut(s) 1390, 1504
HpyF3I CTNAG 7 cut(s) 143, 795, 1089, 1122, 1272, 1409, 1502
HpySE526I ACGT 2 cut(s) 573, 942
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 7 cut(s) 50, 163, 377, 609, 788, 1028, 1118
HspAI GCGC 1 cut(s) 148
KasI GGCGCC 1 cut(s) 147
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 409
LmnI GCTCC 3 cut(s) 581, 1306, 1381
Lsp1109I GCAGC 3 cut(s) 244, 622, 1349
LweI GCATC 1 cut(s) 1055
MabI ACCWGGT 1 cut(s) 1015
MaeI CTAG 5 cut(s) 299, 321, 870, 1209, 1580
MaeII ACGT 2 cut(s) 573, 942
MaeIII GTNAC 4 cut(s) 103, 207, 789, 1193
MflI RGATCY 4 cut(s) 84, 599, 1205, 1588
MluCI AATT 3 cut(s) 59, 203, 520
Mly113I GGCGCC 1 cut(s) 148
MlyI GAGTC 2 cut(s) 899, 1365
MmeI TCCRAC 1 cut(s) 1369
MroI TCCGGA 1 cut(s) 55
MseI TTAA 3 cut(s) 501, 708, 816
MspA1I CMGCKG 1 cut(s) 1362
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 3 cut(s) 56, 350, 1059
MspR9I CCNGG 5 cut(s) 329, 351, 1017, 1059, 1060
MvaI CCWGG 2 cut(s) 329, 1017
MwoI GCNNNNNNNGC 2 cut(s) 1390, 1504
NarI GGCGCC 1 cut(s) 148
NciI CCSGG 3 cut(s) 351, 1059, 1060
NlaIII CATG 7 cut(s) 50, 163, 377, 609, 788, 1028, 1118
NlaIV GGNNCC 3 cut(s) 149, 583, 601
NmuCI GTSAC 3 cut(s) 207, 789, 1193
PagI TCATGA 1 cut(s) 1024
PceI AGGCCT 1 cut(s) 705
PfeI GAWTC 3 cut(s) 153, 308, 889
PflFI GACNNNGTC 1 cut(s) 754
PkrI GCNGC 3 cut(s) 234, 612, 1364
PleI GAGTC 2 cut(s) 899, 1364
PluTI GGCGCC 1 cut(s) 151
PpsI GAGTC 2 cut(s) 899, 1364
PsiI TTATAA 2 cut(s) 36, 978
Psp1406I AACGTT 1 cut(s) 573
Psp6I CCWGG 2 cut(s) 327, 1015
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 2 cut(s) 327, 1015
PspN4I GGNNCC 3 cut(s) 149, 583, 601
PspPI GGNCC 2 cut(s) 7, 281
PsrI GAACNNNNNNTAC 2 cut(s) 96, 128
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 4 cut(s) 84, 599, 1205, 1588
PsyI GACNNNGTC 1 cut(s) 754
PvuII CAGCTG 1 cut(s) 1362
RsaI GTAC 3 cut(s) 222, 682, 1494
RsaNI GTAC 3 cut(s) 221, 681, 1493
SaqAI TTAA 3 cut(s) 501, 708, 816
SatI GCNGC 3 cut(s) 233, 611, 1363
Sau96I GGNCC 2 cut(s) 7, 281
SchI GAGTC 2 cut(s) 899, 1365
ScrFI CCNGG 5 cut(s) 329, 351, 1017, 1059, 1060
SexAI ACCWGGT 1 cut(s) 1015
SfaNI GCATC 1 cut(s) 1055
SfcI CTRYAG 2 cut(s) 420, 720
SfoI GGCGCC 1 cut(s) 149
SinI GGWCC 1 cut(s) 281
SmaI CCCGGG 1 cut(s) 1060
SmlI CTYRAG 3 cut(s) 22, 707, 1385
SmoI CTYRAG 3 cut(s) 22, 707, 1385
SpeI ACTAGT 1 cut(s) 869
Sse9I AATT 3 cut(s) 59, 203, 520
SseBI AGGCCT 1 cut(s) 705
SsiI CCGC 1 cut(s) 924
SspDI GGCGCC 1 cut(s) 147
SspMI CTAG 5 cut(s) 299, 321, 870, 1209, 1580
StuI AGGCCT 1 cut(s) 705
StyD4I CCNGG 5 cut(s) 327, 349, 1015, 1057, 1058
StyI CCWWGG 2 cut(s) 585, 927
TaaI ACNGT 6 cut(s) 416, 685, 754, 969, 1008, 1418
TaiI ACGT 2 cut(s) 576, 945
TaqI TCGA 3 cut(s) 165, 446, 464
TasI AATT 3 cut(s) 59, 203, 520
TfiI GAWTC 3 cut(s) 153, 308, 889
Tru1I TTAA 3 cut(s) 501, 708, 816
Tru9I TTAA 3 cut(s) 501, 708, 816
TscAI CASTG 4 cut(s) 99, 806, 1013, 1126
TseFI GTSAC 3 cut(s) 207, 789, 1193
TseI GCWGC 3 cut(s) 232, 610, 1362
Tsp45I GTSAC 3 cut(s) 207, 789, 1193
TspDTI ATGAA 3 cut(s) 148, 482, 632
TspGWI ACGGA 1 cut(s) 641
TspMI CCCGGG 1 cut(s) 1058
TspRI CASTG 4 cut(s) 99, 806, 1013, 1126
Tth111I GACNNNGTC 1 cut(s) 754
Vha464I CTTAAG 1 cut(s) 707
VpaK11BI GGWCC 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 1058
XspI CTAG 5 cut(s) 299, 321, 870, 1209, 1580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.