FvH4_3g30110

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010339
Physical Location & Seq
Forward (+)
23338433 .. 23340789
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30110.t1

Sequence Viewer

Length: 357 bp
ATGTCTTCAGGCGAAGAAGTTTCTTCCTCTTCGGTTCCAAAGCGTACCTTATCGTGCGCCGCCTGCTTTGACGCTCTCTGGTTTTGCTATTCTCCAGTTCATCAGATGCAGCAATATTATAGGCTGGGGACACTTGATACCTGTGGTGGGAAATGGAGTGCTCTTGTGGATTGTTTAACCTTGAAGACAAAGTCGAGAGCTGAAGTGCAGGAAGTCTTGGAGTCTCGTGAGAAAGCCAAGCATCACATCTGGACTTTTCGAACCCCAGAAGAAGCATCAAGTAATTGGAATAAACTATATGAAGTCCAGCCTTTTGATACGAGGAAAGAGAATAAAGAAAGAGAGCAAGCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

119

Amino Acids

13.58

Weight (kDa)

6.82

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PANTS-like PF11326 16 - 81 3.7e-19 Synaptic plasticity regulator PANTS-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 222
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 1 cut(s) 184
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 109, 350
AspLEI GCGC 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 259
BauI CACGAG 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 228
BisI GCNGC 3 cut(s) 60, 110, 351
BlsI GCNGC 3 cut(s) 61, 111, 352
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 3 cut(s) 96, 250, 284
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 142
Bsp119I TTCGAA 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 163
BspACI CCGC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 259
BsrI ACTGG 1 cut(s) 95
BssSI CACGAG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 225
Bst6I CTCTTC 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 64, 348
BstHHI GCGC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 228
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 64, 348
CfoI GCGC 1 cut(s) 59
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 45
CviJI RGCY 4 cut(s) 124, 200, 236, 310
CviKI_1 RGCY 4 cut(s) 124, 200, 236, 310
CviQI GTAC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 222
FaiI YATR 4 cut(s) 120, 298, 300, 355
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 60, 110, 351
Fsp4HI GCNGC 3 cut(s) 60, 110, 351
GlaI GCGC 1 cut(s) 58
GluI GCNGC 3 cut(s) 60, 110, 351
GsaI CCCAGC 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 78
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 59
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 3 cut(s) 195, 227, 250
HpyCH4V TGCA 2 cut(s) 109, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HspAI GCGC 1 cut(s) 57
LpnPI CCDG 9 cut(s) 64, 76, 108, 110, 154, 194, 235, 279, 320
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 3 cut(s) 96, 250, 284
MboII GAAGA 5 cut(s) 15, 21, 26, 196, 281
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 2 cut(s) 37, 315
MseI TTAA 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 36
NspV TTCGAA 1 cut(s) 259
PflFI GACNNNGTC 1 cut(s) 190
PkrI GCNGC 3 cut(s) 61, 111, 352
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PspFI CCCAGC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 36
PsyI GACNNNGTC 1 cut(s) 190
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 3 cut(s) 60, 110, 351
SchI GAGTC 1 cut(s) 230
SduI GDGCHC 1 cut(s) 163
SetI ASST 4 cut(s) 50, 143, 182, 202
SfaNI GCATC 3 cut(s) 96, 250, 284
SfuI TTCGAA 1 cut(s) 259
Sse9I AATT 1 cut(s) 283
SsiI CCGC 1 cut(s) 60
SspI AATATT 1 cut(s) 116
TaqI TCGA 2 cut(s) 194, 259
TasI AATT 1 cut(s) 283
TauI GCSGC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseI GCWGC 2 cut(s) 109, 350
TspDTI ATGAA 2 cut(s) 89, 315
Tth111I GACNNNGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.