Rh5BG375700

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010339
Physical Location & Seq
Reverse (-)
59380216 .. 59384277
4062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG375700.1

Sequence Viewer

Length: 240 bp
ATGTTAGCTCCAGTTCATCAGATGCAGCAATATTATAGGCTTGGGACACTTGATAACTGTGGTGGGAAATGGAGTGCTCTTGTGGATTGTTTAACTTTGAAGACGAAGCGGTCAGCTGAAGTGCAGGAAATTTTGGAGTCTCGTGAGAAAGCCAAGGCTCACATCTGGACTTTTCGAACCCCAGAAGAAGCATCAAGTAATTGGAAAGAACAATTTGGACATTTAGATGAAATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

79

Amino Acids

9.2

Weight (kDa)

5.89

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PANTS-like PF11326 4 - 53 1.1e-12 Synaptic plasticity regulator PANTS-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 109
AciI CCGC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 2 cut(s) 8, 116
AluI AGCT 2 cut(s) 8, 116
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 175
BauI CACGAG 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 144
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmsI GCATC 2 cut(s) 12, 200
BpiI GAAGAC 1 cut(s) 107
Bpu14I TTCGAA 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 79
BspACI CCGC 1 cut(s) 109
BspT104I TTCGAA 1 cut(s) 175
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 153
BssSI CACGAG 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 59
BstBI TTCGAA 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 107
CviJI RGCY 5 cut(s) 8, 40, 116, 152, 158
CviKI_1 RGCY 5 cut(s) 8, 40, 116, 152, 158
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 153
Eco57I CTGAAG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 1 cut(s) 36
FaqI GGGAC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 143, 166
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 25, 124
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 4 cut(s) 24, 110, 151, 195
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 2 cut(s) 12, 200
MboII GAAGA 2 cut(s) 112, 197
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 3 cut(s) 129, 199, 212
MlyI GAGTC 1 cut(s) 146
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 116
NspV TTCGAA 1 cut(s) 175
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 26
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 79
SetI ASST 2 cut(s) 10, 118
SfaNI GCATC 2 cut(s) 12, 200
SfuI TTCGAA 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 3 cut(s) 129, 199, 212
SsiI CCGC 1 cut(s) 109
SspI AATATT 1 cut(s) 32
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 175
TasI AATT 3 cut(s) 129, 199, 212
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 5
XapI RAATTY 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.