Rh5CG398200

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010339
Physical Location & Seq
Reverse (-)
52942989 .. 52948593
5605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG398200.1

Sequence Viewer

Length: 459 bp
ATGATATCCGAGCGCTGTCGGCGTTTCTCGGTATTCCGCCATCGACGTTGCTCGCGTTCTCGTGCTCCTTCTCCGCTTGCCTCGGCCTCGTCGTCTCCCAAGGAAGGCAGAGTCCCTCGGTCTGTTGAGAGAGGCAGAGTCATGTCTTCAGGCGAAGAAGTCTCTTCGGTTTCAAAGCGTACCTTATCGTGCTCCACCTGCTTTGACGCTCTCTGGTTTTGCTATTCTCCAGTTCATCAGATGCAGCAATATTATAGGCTTGGGACACTTGATAACTGTGGTGGGAAATGGAGTGCTCTTGTGGATTGTTTAACTTTGAAGACAAAGCGGTCAGCTGAAGTGCAGGAAATTTTGGAGTCTCGTGAGAAAGCCAAGGCTCACATCTGGACTTTTCGAACCCCAGAAGAAGCATCAAGTAATTGGAAAGAACAATTTGGACATTTAGATGAAATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

152

Amino Acids

17.44

Weight (kDa)

9.23

Isoelectric Point (pI)

74.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PANTS-like PF11326 61 - 126 7.2e-20 Synaptic plasticity regulator PANTS-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
AasI GACNNNNNNGTC 1 cut(s) 328
Acc36I ACCTGC 1 cut(s) 206
AccII CGCG 1 cut(s) 55
AciI CCGC 3 cut(s) 37, 74, 328
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 2 cut(s) 132, 357
AfaI GTAC 1 cut(s) 181
AfeI AGCGCT 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 2 cut(s) 174, 319
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
Alw21I GWGCWC 3 cut(s) 67, 194, 298
Alw26I GTCTC 3 cut(s) 99, 166, 363
Aor51HI AGCGCT 1 cut(s) 14
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 348
AspLEI GCGC 1 cut(s) 15
AsuII TTCGAA 1 cut(s) 394
BauI CACGAG 2 cut(s) 60, 360
BbsI GAAGAC 2 cut(s) 138, 326
Bbv12I GWGCWC 3 cut(s) 67, 194, 298
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 48
BcoDI GTCTC 3 cut(s) 99, 166, 363
BfoI RGCGCY 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmsI GCATC 2 cut(s) 231, 419
BpiI GAAGAC 2 cut(s) 138, 326
BpmI CTGGAG 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 394
BsaJI CCNNGG 4 cut(s) 81, 99, 116, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 230
BseDI CCNNGG 4 cut(s) 81, 99, 116, 372
BseLI CCNNNNNNNGG 1 cut(s) 104
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 86
BsiHKAI GWGCWC 3 cut(s) 67, 194, 298
BslFI GGGAC 2 cut(s) 98, 277
BslI CCNNNNNNNGG 1 cut(s) 104
BsmAI GTCTC 3 cut(s) 99, 166, 363
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 2 cut(s) 98, 277
BsnI GGCC 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 394
Bsp1286I GDGCHC 3 cut(s) 67, 194, 298
BspACI CCGC 3 cut(s) 37, 74, 328
BspANI GGCC 1 cut(s) 86
BspFNI CGCG 1 cut(s) 55
BspMI ACCTGC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 394
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 4 cut(s) 81, 99, 116, 372
BssSI CACGAG 2 cut(s) 60, 360
BssT1I CCWWGG 2 cut(s) 99, 372
Bst2BI CACGAG 2 cut(s) 60, 360
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 394
BstC8I GCNNGC 2 cut(s) 53, 78
BstFNI CGCG 1 cut(s) 55
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 1 cut(s) 15
BstMAI GTCTC 3 cut(s) 99, 166, 363
BstMWI GCNNNNNNNGC 2 cut(s) 19, 198
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 138, 326
BsuRI GGCC 1 cut(s) 86
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 53, 78
CfoI GCGC 1 cut(s) 15
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 180
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 1 cut(s) 142
CviJI RGCY 5 cut(s) 86, 259, 335, 371, 377
CviKI_1 RGCY 5 cut(s) 86, 259, 335, 371, 377
CviQI GTAC 1 cut(s) 180
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 2 cut(s) 99, 372
Eco32I GATATC 1 cut(s) 6
Eco47III AGCGCT 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 132, 357
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 99, 372
ErhI CCWWGG 2 cut(s) 99, 372
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 1 cut(s) 145
FaiI YATR 2 cut(s) 143, 255
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 2 cut(s) 98, 277
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 245
GlaI GCGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 1 cut(s) 86
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 15
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 3 cut(s) 111, 138, 356
Hpy188I TCNGA 2 cut(s) 10, 240
Hpy188III TCNNGA 2 cut(s) 362, 385
Hpy99I CGWCG 2 cut(s) 48, 94
HpyAV CCTTC 2 cut(s) 78, 98
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 244, 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 198
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 1 cut(s) 13
LmnI GCTCC 2 cut(s) 70, 197
LpnPI CCDG 7 cut(s) 135, 199, 211, 243, 329, 370, 414
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 231, 419
MaeII ACGT 1 cut(s) 46
MboII GAAGA 5 cut(s) 138, 156, 167, 331, 416
MhlI GDGCHC 3 cut(s) 67, 194, 298
MluCI AATT 3 cut(s) 348, 418, 431
MlyI GAGTC 3 cut(s) 120, 147, 365
MnlI CCTC 4 cut(s) 91, 97, 125, 126
MseI TTAA 1 cut(s) 311
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 335
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 19, 198
NlaIII CATG 1 cut(s) 145
NmeAIII GCCGAG 1 cut(s) 62
NspV TTCGAA 1 cut(s) 394
PaqCI CACCTGC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 2 cut(s) 52, 89
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 3 cut(s) 119, 146, 364
PpsI GAGTC 3 cut(s) 119, 146, 364
PvuII CAGCTG 1 cut(s) 335
RsaI GTAC 1 cut(s) 181
RsaNI GTAC 1 cut(s) 180
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 1 cut(s) 245
SchI GAGTC 3 cut(s) 120, 147, 365
SduI GDGCHC 3 cut(s) 67, 194, 298
SetI ASST 4 cut(s) 49, 185, 200, 337
SfaNI GCATC 2 cut(s) 231, 419
SfuI TTCGAA 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 3 cut(s) 348, 418, 431
SsiI CCGC 3 cut(s) 37, 74, 328
SspI AATATT 1 cut(s) 251
StyI CCWWGG 2 cut(s) 99, 372
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 49
TaqI TCGA 2 cut(s) 43, 394
TaqII GACCGA 1 cut(s) 108
TasI AATT 3 cut(s) 348, 418, 431
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 224
XapI RAATTY 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.