Rh5DG388900

Protein of unknown function (DUF3128)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010339
Physical Location & Seq
Reverse (-)
60468209 .. 60471451
3243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG388900.1

Sequence Viewer

Length: 318 bp
ATGTCTTCAGGCGAAGAAGTCTCTTCGGTTTCAAAGCGTACCTTATCGTGCTCCACCTGCTTTGACGCTCTCTGGTTTTGCTATTCTCCAGTTCATCAGATGCAGCAATATTATAGGCTTGGGACACTTGATAACTGTGGTGGGAAATGGAGTGCTCTTGTGGATTGTTTAACTTTGAAGACAAAGCGGTCAGCTGAAGTGCAGGAAATTTTGGAGTCTCGTGAGAAAGCCAAGGCTCACATCTGGACTTTTCGAACCCCAGAAGAAGCATCAAGTAATTGGAAAGAACAATTTGGACATTTAGATGAAATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3128

Protein Analysis

105

Amino Acids

12.08

Weight (kDa)

5.61

Isoelectric Point (pI)

60.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PANTS-like PF11326 14 - 79 2.9e-20 Synaptic plasticity regulator PANTS-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010339)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25315 AT4G25315 AT4G25315
fragaria_vesca FvH4_3g30110
malus_domestica MD03G1133000.v1.1 MD14G1038500.v1.1
prunus_persica Prupe.6G117700_v2.0.a1
pyrus_communis pycom14g03310
rosa_chinensis RchiOBHm_Chr5g0055601
rosa_laevigata RLG00000034999
rosa_multiflora Rmu_sc0004818.1_g000002
rosa_roxburghii Rroxscaffold_1G00024680
rosa_rugosa Rorug05G0294200 Rorug05G0294300 Rorug05G0294300 Rorug05G0294400
rosa_samantha Rh5AG363600 Rh5BG375700 Rh5CG398200 Rh5DG388900
rosa_wichuraiana Rw5G034210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
AasI GACNNNNNNGTC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 65
AciI CCGC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 2 cut(s) 33, 178
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 2 cut(s) 53, 157
Alw26I GTCTC 2 cut(s) 25, 222
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 207
AsuII TTCGAA 1 cut(s) 253
BauI CACGAG 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 53, 157
BbvI GCAGC 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 25, 222
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmsI GCATC 2 cut(s) 90, 278
BpiI GAAGAC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 221
BsiHKAI GWGCWC 2 cut(s) 53, 157
BslFI GGGAC 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 25, 222
BsmFI GGGAC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 2 cut(s) 53, 157
BspACI CCGC 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 65
BspT104I TTCGAA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 231
BssSI CACGAG 1 cut(s) 219
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 1 cut(s) 28
BstBI TTCGAA 1 cut(s) 253
BstMAI GTCTC 2 cut(s) 25, 222
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 115
BstV2I GAAGAC 1 cut(s) 185
BveI ACCTGC 1 cut(s) 65
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 39
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviJI RGCY 4 cut(s) 118, 194, 230, 236
CviKI_1 RGCY 4 cut(s) 118, 194, 230, 236
CviQI GTAC 1 cut(s) 39
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco130I CCWWGG 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaiI YATR 1 cut(s) 114
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 72
HgaI GACGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 221, 244
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 103, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 6 cut(s) 58, 70, 102, 188, 229, 273
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 90, 278
MboII GAAGA 4 cut(s) 15, 26, 190, 275
MhlI GDGCHC 2 cut(s) 53, 157
MluCI AATT 3 cut(s) 207, 277, 290
MlyI GAGTC 1 cut(s) 224
MseI TTAA 1 cut(s) 170
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 57
NspV TTCGAA 1 cut(s) 253
PaqCI CACCTGC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 1 cut(s) 170
SatI GCNGC 1 cut(s) 104
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 2 cut(s) 53, 157
SetI ASST 3 cut(s) 44, 59, 196
SfaNI GCATC 2 cut(s) 90, 278
SfuI TTCGAA 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 3 cut(s) 207, 277, 290
SsiI CCGC 1 cut(s) 187
SspI AATATT 1 cut(s) 110
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 253
TasI AATT 3 cut(s) 207, 277, 290
Tru1I TTAA 1 cut(s) 170
Tru9I TTAA 1 cut(s) 170
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 83
XapI RAATTY 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.